data_8C15 # _model_server_result.job_id rUJjVhdqUgqH9aDiKpFjRA _model_server_result.datetime_utc '2024-11-28 05:00:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c15 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":413}' # _entry.id 8C15 # _exptl.entry_id 8C15 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8C15 _cell.length_a 80.857 _cell.length_b 80.857 _cell.length_c 165.16 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C15 _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 M N N ? 7 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 151 A ASP 274 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc2 A OD1 ASP 151 A ASP 274 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? metalc ? metalc3 A OD2 ASP 151 A ASP 274 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc4 B O1B ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.973 ? metalc ? metalc5 B O1A ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.925 ? metalc ? metalc6 B O3B ADP . A ADP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc7 D MG MG . A MG 403 1_555 F O2 T5L . A T5L 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.901 ? metalc ? metalc8 D MG MG . A MG 403 1_555 P O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? metalc ? metalc9 D MG MG . A MG 403 1_555 P O HOH . A HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 133 n n S C1 DMS sing 134 n n S C2 DMS sing 135 n n C1 H11 DMS sing 136 n n C1 H12 DMS sing 137 n n C1 H13 DMS sing 138 n n C2 H21 DMS sing 139 n n C2 H22 DMS sing 140 n n C2 H23 DMS sing 141 n n # _atom_sites.entry_id 8C15 _atom_sites.fract_transf_matrix[1][1] 0.012368 _atom_sites.fract_transf_matrix[1][2] 0.00714 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014281 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006055 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 401 1 ADP ADP . C 3 MG A 1 402 1 MG MG . D 3 MG A 1 403 2 MG MG . E 4 T4C A 1 404 1 T4C 313 . F 5 T5L A 1 405 1 T5L CHA . G 6 SO4 A 1 406 1 SO4 SO4 . H 6 SO4 A 1 407 2 SO4 SO4 . I 6 SO4 A 1 408 3 SO4 SO4 . J 6 SO4 A 1 409 5 SO4 SO4 . K 6 SO4 A 1 410 6 SO4 SO4 . L 6 SO4 A 1 411 7 SO4 SO4 . M 7 DMS A 1 412 1 DMS DMS . N 7 DMS A 1 413 2 DMS DMS . O 8 ACT A 1 414 1 ACT ACT . P 9 HOH A 1 501 36 HOH HOH . P 9 HOH A 2 502 39 HOH HOH . P 9 HOH A 3 503 4 HOH HOH . P 9 HOH A 4 504 2 HOH HOH . P 9 HOH A 5 505 40 HOH HOH . P 9 HOH A 6 506 50 HOH HOH . P 9 HOH A 7 507 7 HOH HOH . P 9 HOH A 8 508 56 HOH HOH . P 9 HOH A 9 509 10 HOH HOH . P 9 HOH A 10 510 46 HOH HOH . P 9 HOH A 11 511 3 HOH HOH . P 9 HOH A 12 512 37 HOH HOH . P 9 HOH A 13 513 31 HOH HOH . P 9 HOH A 14 514 29 HOH HOH . P 9 HOH A 15 515 21 HOH HOH . P 9 HOH A 16 516 9 HOH HOH . P 9 HOH A 17 517 41 HOH HOH . P 9 HOH A 18 518 20 HOH HOH . P 9 HOH A 19 519 68 HOH HOH . P 9 HOH A 20 520 48 HOH HOH . P 9 HOH A 21 521 15 HOH HOH . P 9 HOH A 22 522 12 HOH HOH . P 9 HOH A 23 523 5 HOH HOH . P 9 HOH A 24 524 67 HOH HOH . P 9 HOH A 25 525 22 HOH HOH . P 9 HOH A 26 526 38 HOH HOH . P 9 HOH A 27 527 14 HOH HOH . P 9 HOH A 28 528 11 HOH HOH . P 9 HOH A 29 529 51 HOH HOH . P 9 HOH A 30 530 59 HOH HOH . P 9 HOH A 31 531 52 HOH HOH . P 9 HOH A 32 532 57 HOH HOH . P 9 HOH A 33 533 17 HOH HOH . P 9 HOH A 34 534 23 HOH HOH . P 9 HOH A 35 535 62 HOH HOH . P 9 HOH A 36 536 8 HOH HOH . P 9 HOH A 37 537 30 HOH HOH . P 9 HOH A 38 538 24 HOH HOH . P 9 HOH A 39 539 33 HOH HOH . P 9 HOH A 40 540 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . N 7 4.273 -17.233 5.687 1 128.17 ? S DMS 413 A 1 HETATM 2 O O DMS . . . N 7 5.062 -17.795 4.589 1 128.68 ? O DMS 413 A 1 HETATM 3 C C1 DMS . . . N 7 5.274 -15.93 6.329 1 128.39 ? C1 DMS 413 A 1 HETATM 4 C C2 DMS . . . N 7 3.004 -16.288 4.89 1 127.44 ? C2 DMS 413 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #