data_8C17
#
_model_server_result.job_id            ILK7JrksEwPVOmzfFUZS8Q 
_model_server_result.datetime_utc      '2024-11-29 08:09:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8c17 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":502}' 
#
_entry.id    8C17 
#
_exptl.entry_id    8C17 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8C17 
_cell.length_a            54.468 
_cell.length_b            54.468 
_cell.length_c            166.429 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8C17 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G 1 1 
A,B,C,D,E,F,G 1 2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -55.476333 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 130 A LYS 344 1_555 E C1 MYR . A MYR 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? 
covale ? covale2 B C ACY 1 B ACY 1 1_555 B N PHE 2 B PHE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? 
covale ? covale3 B C PRO 4 B PRO 4 1_555 B N NAL 5 B NAL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? 
covale ? covale4 B C NAL 5 B NAL 5 1_555 B N ASP 6 B ASP 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.359 ? 
covale ? covale5 B C HIS 8 B HIS 8 1_555 B N T79 9 B T79 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? 
covale ? covale6 B C T79 9 B T79 9 1_555 B N ASP 10 B ASP 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 ? 
covale ? covale7 B CE1 T79 9 B T79 9 1_555 B SG CYS 13 B CYS 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.818 ? 
covale ? covale8 B C ILE 11 B ILE 11 1_555 B N NAL 12 B NAL 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? 
covale ? covale9 B C NAL 12 B NAL 12 1_555 B N CYS 13 B CYS 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? 
covale ? covale10 B C VAL 15 B VAL 15 1_555 B N NAL 16 B NAL 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 ? 
covale ? covale11 B C NAL 16 B NAL 16 1_555 B N ARG 17 B ARG 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 136 n n 
C1 C2 GOL sing 137 n n 
C1 H11 GOL sing 138 n n 
C1 H12 GOL sing 139 n n 
O1 HO1 GOL sing 140 n n 
C2 O2 GOL sing 141 n n 
C2 C3 GOL sing 142 n n 
C2 H2 GOL sing 143 n n 
O2 HO2 GOL sing 144 n n 
C3 O3 GOL sing 145 n n 
C3 H31 GOL sing 146 n n 
C3 H32 GOL sing 147 n n 
O3 HO3 GOL sing 148 n n 
#
_atom_sites.entry_id                     8C17 
_atom_sites.fract_transf_matrix[1][1]    0.018359 
_atom_sites.fract_transf_matrix[1][2]    0.0106 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.0212 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006009 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 GOL A 1 501 501 GOL GOL . 
D 3 GOL A 1 502 502 GOL GOL . 
E 4 MYR A 1 503 344 MYR MYK . 
F 5 HOH A 1 601 26 HOH HOH . 
F 5 HOH A 2 602 57 HOH HOH . 
F 5 HOH A 3 603 39 HOH HOH . 
F 5 HOH A 4 604 33 HOH HOH . 
F 5 HOH A 5 605 51 HOH HOH . 
F 5 HOH A 6 606 25 HOH HOH . 
F 5 HOH A 7 607 27 HOH HOH . 
F 5 HOH A 8 608 28 HOH HOH . 
F 5 HOH A 9 609 48 HOH HOH . 
F 5 HOH A 10 610 30 HOH HOH . 
F 5 HOH A 11 611 43 HOH HOH . 
F 5 HOH A 12 612 18 HOH HOH . 
F 5 HOH A 13 613 20 HOH HOH . 
F 5 HOH A 14 614 35 HOH HOH . 
F 5 HOH A 15 615 4 HOH HOH . 
F 5 HOH A 16 616 17 HOH HOH . 
F 5 HOH A 17 617 11 HOH HOH . 
F 5 HOH A 18 618 50 HOH HOH . 
F 5 HOH A 19 619 14 HOH HOH . 
F 5 HOH A 20 620 31 HOH HOH . 
F 5 HOH A 21 621 3 HOH HOH . 
F 5 HOH A 22 622 46 HOH HOH . 
F 5 HOH A 23 623 36 HOH HOH . 
F 5 HOH A 24 624 19 HOH HOH . 
F 5 HOH A 25 625 37 HOH HOH . 
F 5 HOH A 26 626 49 HOH HOH . 
F 5 HOH A 27 627 23 HOH HOH . 
F 5 HOH A 28 628 32 HOH HOH . 
F 5 HOH A 29 629 42 HOH HOH . 
F 5 HOH A 30 630 12 HOH HOH . 
F 5 HOH A 31 631 29 HOH HOH . 
F 5 HOH A 32 632 2 HOH HOH . 
F 5 HOH A 33 633 7 HOH HOH . 
F 5 HOH A 34 634 5 HOH HOH . 
F 5 HOH A 35 635 15 HOH HOH . 
F 5 HOH A 36 636 6 HOH HOH . 
F 5 HOH A 37 637 40 HOH HOH . 
F 5 HOH A 38 638 44 HOH HOH . 
F 5 HOH A 39 639 13 HOH HOH . 
F 5 HOH A 40 640 54 HOH HOH . 
F 5 HOH A 41 641 52 HOH HOH . 
F 5 HOH A 42 642 41 HOH HOH . 
F 5 HOH A 43 643 21 HOH HOH . 
F 5 HOH A 44 644 34 HOH HOH . 
F 5 HOH A 45 645 24 HOH HOH . 
F 5 HOH A 46 646 55 HOH HOH . 
F 5 HOH A 47 647 1 HOH HOH . 
F 5 HOH A 48 648 45 HOH HOH . 
F 5 HOH A 49 649 9 HOH HOH . 
F 5 HOH A 50 650 10 HOH HOH . 
F 5 HOH A 51 651 38 HOH HOH . 
F 5 HOH A 52 652 56 HOH HOH . 
F 5 HOH A 53 653 8 HOH HOH . 
F 5 HOH A 54 654 53 HOH HOH . 
F 5 HOH A 55 655 22 HOH HOH . 
F 5 HOH A 56 656 16 HOH HOH . 
G 5 HOH B 1 101 47 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 3 -19.966 13.028 0.166 1 59.47 ? C1 GOL 502 A 1 
HETATM 2 O O1 GOL . . . D 3 -19.887 12.249 1.353 1 59.7 ? O1 GOL 502 A 1 
HETATM 3 C C2 GOL . . . D 3 -21.337 13.644 0.008 1 59.06 ? C2 GOL 502 A 1 
HETATM 4 O O2 GOL . . . D 3 -22.207 12.68 -0.569 1 58.88 ? O2 GOL 502 A 1 
HETATM 5 C C3 GOL . . . D 3 -21.329 14.877 -0.867 1 58.98 ? C3 GOL 502 A 1 
HETATM 6 O O3 GOL . . . D 3 -22.559 15.588 -0.76 1 58.82 ? O3 GOL 502 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           339 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#