data_8C1D # _model_server_result.job_id khZzZCHm7GfGVGwq_vqdgw _model_server_result.datetime_utc '2024-10-10 07:27:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c1d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 8C1D # _exptl.entry_id 8C1D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 172.178 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1~{R},2~{R})-cyclohexane-1,2-dicarboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8C1D _cell.length_a 81.341 _cell.length_b 81.341 _cell.length_c 171.531 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C1D _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 151 A ASP 274 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc2 A OD1 ASP 151 A ASP 274 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc3 A OD2 ASP 151 A ASP 274 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc4 C O1B ADP . A ADP 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? metalc ? metalc5 C O1A ADP . A ADP 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc6 C O3B ADP . A ADP 402 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc7 D MG MG . A MG 403 1_555 P O HOH . A HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc8 D MG MG . A MG 403 1_555 P O HOH . A HOH 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.143 ? metalc ? metalc9 E MG MG . A MG 404 1_555 F O2 T5L . A T5L 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.918 ? metalc ? metalc10 E MG MG . A MG 404 1_555 P O HOH . A HOH 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc11 E MG MG . A MG 404 1_555 P O HOH . A HOH 532 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? # _chem_comp.formula 'C8 H12 O4' _chem_comp.formula_weight 172.178 _chem_comp.id T5L _chem_comp.mon_nstd_flag . _chem_comp.name '(1~{R},2~{R})-cyclohexane-1,2-dicarboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C3 T5L doub 387 n n C3 O2 T5L sing 388 n n C3 C2 T5L sing 389 n n O1 C T5L doub 390 n n C4 C2 T5L sing 391 n n C4 C5 T5L sing 392 n n C2 C1 T5L sing 393 n n C1 C T5L sing 394 n n C1 C7 T5L sing 395 n n C O T5L sing 396 n n C5 C6 T5L sing 397 n n C6 C7 T5L sing 398 n n C1 H1 T5L sing 399 n n C2 H2 T5L sing 400 n n O2 H3 T5L sing 401 n n C4 H4 T5L sing 402 n n C4 H5 T5L sing 403 n n C5 H6 T5L sing 404 n n C5 H7 T5L sing 405 n n C6 H8 T5L sing 406 n n C6 H9 T5L sing 407 n n C7 H10 T5L sing 408 n n C7 H11 T5L sing 409 n n O H12 T5L sing 410 n n # _atom_sites.entry_id 8C1D _atom_sites.fract_transf_matrix[1][1] 0.012294 _atom_sites.fract_transf_matrix[1][2] 0.007098 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014196 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00583 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 T2F A 1 401 4000 T2F 377 . C 3 ADP A 1 402 1 ADP ADP . D 4 MG A 1 403 1 MG MG . E 4 MG A 1 404 2 MG MG . F 5 T5L A 1 405 1 T5L CHA . G 6 SO4 A 1 406 1 SO4 SO4 . H 6 SO4 A 1 407 2 SO4 SO4 . I 6 SO4 A 1 408 3 SO4 SO4 . J 6 SO4 A 1 409 5 SO4 SO4 . K 6 SO4 A 1 410 6 SO4 SO4 . L 6 SO4 A 1 411 7 SO4 SO4 . M 7 DMS A 1 412 1 DMS DMS . N 7 DMS A 1 413 2 DMS DMS . O 8 ACT A 1 414 1 ACT ACT . P 9 HOH A 1 501 4 HOH HOH . P 9 HOH A 2 502 9 HOH HOH . P 9 HOH A 3 503 27 HOH HOH . P 9 HOH A 4 504 99 HOH HOH . P 9 HOH A 5 505 23 HOH HOH . P 9 HOH A 6 506 82 HOH HOH . P 9 HOH A 7 507 72 HOH HOH . P 9 HOH A 8 508 95 HOH HOH . P 9 HOH A 9 509 97 HOH HOH . P 9 HOH A 10 510 3 HOH HOH . P 9 HOH A 11 511 2 HOH HOH . P 9 HOH A 12 512 100 HOH HOH . P 9 HOH A 13 513 98 HOH HOH . P 9 HOH A 14 514 68 HOH HOH . P 9 HOH A 15 515 92 HOH HOH . P 9 HOH A 16 516 48 HOH HOH . P 9 HOH A 17 517 69 HOH HOH . P 9 HOH A 18 518 7 HOH HOH . P 9 HOH A 19 519 62 HOH HOH . P 9 HOH A 20 520 96 HOH HOH . P 9 HOH A 21 521 19 HOH HOH . P 9 HOH A 22 522 1 HOH HOH . P 9 HOH A 23 523 43 HOH HOH . P 9 HOH A 24 524 6 HOH HOH . P 9 HOH A 25 525 81 HOH HOH . P 9 HOH A 26 526 17 HOH HOH . P 9 HOH A 27 527 93 HOH HOH . P 9 HOH A 28 528 70 HOH HOH . P 9 HOH A 29 529 34 HOH HOH . P 9 HOH A 30 530 35 HOH HOH . P 9 HOH A 31 531 28 HOH HOH . P 9 HOH A 32 532 94 HOH HOH . P 9 HOH A 33 533 139 HOH HOH . P 9 HOH A 34 534 124 HOH HOH . P 9 HOH A 35 535 10 HOH HOH . P 9 HOH A 36 536 40 HOH HOH . P 9 HOH A 37 537 20 HOH HOH . P 9 HOH A 38 538 16 HOH HOH . P 9 HOH A 39 539 140 HOH HOH . P 9 HOH A 40 540 8 HOH HOH . P 9 HOH A 41 541 14 HOH HOH . P 9 HOH A 42 542 31 HOH HOH . P 9 HOH A 43 543 5 HOH HOH . P 9 HOH A 44 544 29 HOH HOH . P 9 HOH A 45 545 38 HOH HOH . P 9 HOH A 46 546 141 HOH HOH . P 9 HOH A 47 547 59 HOH HOH . P 9 HOH A 48 548 12 HOH HOH . P 9 HOH A 49 549 138 HOH HOH . P 9 HOH A 50 550 64 HOH HOH . P 9 HOH A 51 551 54 HOH HOH . P 9 HOH A 52 552 63 HOH HOH . P 9 HOH A 53 553 13 HOH HOH . P 9 HOH A 54 554 137 HOH HOH . P 9 HOH A 55 555 36 HOH HOH . P 9 HOH A 56 556 24 HOH HOH . P 9 HOH A 57 557 121 HOH HOH . P 9 HOH A 58 558 101 HOH HOH . P 9 HOH A 59 559 46 HOH HOH . P 9 HOH A 60 560 15 HOH HOH . P 9 HOH A 61 561 26 HOH HOH . P 9 HOH A 62 562 55 HOH HOH . P 9 HOH A 63 563 11 HOH HOH . P 9 HOH A 64 564 105 HOH HOH . P 9 HOH A 65 565 61 HOH HOH . P 9 HOH A 66 566 132 HOH HOH . P 9 HOH A 67 567 142 HOH HOH . P 9 HOH A 68 568 30 HOH HOH . P 9 HOH A 69 569 80 HOH HOH . P 9 HOH A 70 570 44 HOH HOH . P 9 HOH A 71 571 112 HOH HOH . P 9 HOH A 72 572 41 HOH HOH . P 9 HOH A 73 573 84 HOH HOH . P 9 HOH A 74 574 53 HOH HOH . P 9 HOH A 75 575 58 HOH HOH . P 9 HOH A 76 576 37 HOH HOH . P 9 HOH A 77 577 51 HOH HOH . P 9 HOH A 78 578 60 HOH HOH . P 9 HOH A 79 579 66 HOH HOH . P 9 HOH A 80 580 89 HOH HOH . P 9 HOH A 81 581 78 HOH HOH . P 9 HOH A 82 582 77 HOH HOH . P 9 HOH A 83 583 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 T5L . . . F 5 -12.471 -18.992 7.416 1 63.86 ? C1 T5L 405 A 1 HETATM 2 C C2 T5L . . . F 5 -13.697 -19.88 7.159 1 65.19 ? C2 T5L 405 A 1 HETATM 3 C C3 T5L . . . F 5 -13.449 -20.946 6.123 1 67.02 ? C3 T5L 405 A 1 HETATM 4 O O1 T5L . . . F 5 -10.459 -19.588 6.405 1 64.01 ? O1 T5L 405 A 1 HETATM 5 O O3 T5L . . . F 5 -13.515 -20.778 4.916 1 68.93 ? O3 T5L 405 A 1 HETATM 6 O O2 T5L . . . F 5 -13.174 -22.078 6.694 1 64.26 ? O2 T5L 405 A 1 HETATM 7 C C4 T5L . . . F 5 -14.946 -19.024 6.918 1 66.48 ? C4 T5L 405 A 1 HETATM 8 C C5 T5L . . . F 5 -15.209 -18.096 8.105 1 68.31 ? C5 T5L 405 A 1 HETATM 9 C C6 T5L . . . F 5 -13.975 -17.248 8.463 1 68.58 ? C6 T5L 405 A 1 HETATM 10 C C7 T5L . . . F 5 -12.715 -18.102 8.642 1 65.74 ? C7 T5L 405 A 1 HETATM 11 C C T5L . . . F 5 -11.176 -19.769 7.477 1 64.53 ? C T5L 405 A 1 HETATM 12 O O T5L . . . F 5 -10.827 -20.458 8.42 1 59.76 ? O T5L 405 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #