data_8C1E # _model_server_result.job_id g4G_2EfAFZ_rdSIbHR6H_A _model_server_result.datetime_utc '2024-11-23 03:19:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c1e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 8C1E # _exptl.entry_id 8C1E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8C1E _cell.length_a 82.037 _cell.length_b 82.037 _cell.length_c 135.867 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C1E _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 168 A THR 287 1_555 A N TPO 169 A TPO 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale2 A C TPO 169 A TPO 288 1_555 A N LEU 170 A LEU 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? metalc ? metalc1 A OD1 ASN 142 A ASN 261 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc2 A OD2 ASP 155 A ASP 274 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc3 C MG MG . A MG 402 1_555 D O1B ATP . A ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc4 C MG MG . A MG 402 1_555 D O1A ATP . A ATP 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc5 C MG MG . A MG 402 1_555 E O HOH . A HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.571 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8C1E _atom_sites.fract_transf_matrix[1][1] 0.01219 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01219 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00736 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 T0X A 1 401 4000 T0X 416 . C 3 MG A 1 402 1 MG MG . D 4 ATP A 1 403 1 ATP ATP . E 5 HOH A 1 501 53 HOH HOH . E 5 HOH A 2 502 50 HOH HOH . E 5 HOH A 3 503 13 HOH HOH . E 5 HOH A 4 504 18 HOH HOH . E 5 HOH A 5 505 129 HOH HOH . E 5 HOH A 6 506 32 HOH HOH . E 5 HOH A 7 507 108 HOH HOH . E 5 HOH A 8 508 11 HOH HOH . E 5 HOH A 9 509 118 HOH HOH . E 5 HOH A 10 510 12 HOH HOH . E 5 HOH A 11 511 59 HOH HOH . E 5 HOH A 12 512 14 HOH HOH . E 5 HOH A 13 513 3 HOH HOH . E 5 HOH A 14 514 128 HOH HOH . E 5 HOH A 15 515 92 HOH HOH . E 5 HOH A 16 516 106 HOH HOH . E 5 HOH A 17 517 20 HOH HOH . E 5 HOH A 18 518 54 HOH HOH . E 5 HOH A 19 519 123 HOH HOH . E 5 HOH A 20 520 62 HOH HOH . E 5 HOH A 21 521 93 HOH HOH . E 5 HOH A 22 522 41 HOH HOH . E 5 HOH A 23 523 10 HOH HOH . E 5 HOH A 24 524 21 HOH HOH . E 5 HOH A 25 525 9 HOH HOH . E 5 HOH A 26 526 29 HOH HOH . E 5 HOH A 27 527 96 HOH HOH . E 5 HOH A 28 528 8 HOH HOH . E 5 HOH A 29 529 6 HOH HOH . E 5 HOH A 30 530 66 HOH HOH . E 5 HOH A 31 531 89 HOH HOH . E 5 HOH A 32 532 19 HOH HOH . E 5 HOH A 33 533 7 HOH HOH . E 5 HOH A 34 534 5 HOH HOH . E 5 HOH A 35 535 84 HOH HOH . E 5 HOH A 36 536 2 HOH HOH . E 5 HOH A 37 537 73 HOH HOH . E 5 HOH A 38 538 60 HOH HOH . E 5 HOH A 39 539 43 HOH HOH . E 5 HOH A 40 540 71 HOH HOH . E 5 HOH A 41 541 23 HOH HOH . E 5 HOH A 42 542 114 HOH HOH . E 5 HOH A 43 543 31 HOH HOH . E 5 HOH A 44 544 70 HOH HOH . E 5 HOH A 45 545 102 HOH HOH . E 5 HOH A 46 546 30 HOH HOH . E 5 HOH A 47 547 49 HOH HOH . E 5 HOH A 48 548 101 HOH HOH . E 5 HOH A 49 549 16 HOH HOH . E 5 HOH A 50 550 25 HOH HOH . E 5 HOH A 51 551 58 HOH HOH . E 5 HOH A 52 552 38 HOH HOH . E 5 HOH A 53 553 113 HOH HOH . E 5 HOH A 54 554 99 HOH HOH . E 5 HOH A 55 555 33 HOH HOH . E 5 HOH A 56 556 117 HOH HOH . E 5 HOH A 57 557 116 HOH HOH . E 5 HOH A 58 558 77 HOH HOH . E 5 HOH A 59 559 36 HOH HOH . E 5 HOH A 60 560 120 HOH HOH . E 5 HOH A 61 561 98 HOH HOH . E 5 HOH A 62 562 46 HOH HOH . E 5 HOH A 63 563 94 HOH HOH . E 5 HOH A 64 564 85 HOH HOH . E 5 HOH A 65 565 88 HOH HOH . E 5 HOH A 66 566 100 HOH HOH . E 5 HOH A 67 567 132 HOH HOH . E 5 HOH A 68 568 91 HOH HOH . E 5 HOH A 69 569 130 HOH HOH . E 5 HOH A 70 570 75 HOH HOH . E 5 HOH A 71 571 90 HOH HOH . E 5 HOH A 72 572 131 HOH HOH . E 5 HOH A 73 573 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . D 4 27.743 86.338 4.426 1 62.85 ? PG ATP 403 A 1 HETATM 2 O O1G ATP . . . D 4 27.569 86.039 2.922 1 57.72 ? O1G ATP 403 A 1 HETATM 3 O O2G ATP . . . D 4 26.822 87.416 5.069 1 49.95 ? O2G ATP 403 A 1 HETATM 4 O O3G ATP . . . D 4 29.225 86.649 4.557 1 53.91 ? O3G ATP 403 A 1 HETATM 5 P PB ATP . . . D 4 25.937 84.101 5.457 1 33.14 ? PB ATP 403 A 1 HETATM 6 O O1B ATP . . . D 4 25.046 84.795 6.418 1 34.8 ? O1B ATP 403 A 1 HETATM 7 O O2B ATP . . . D 4 25.342 83.534 4.201 1 34.79 ? O2B ATP 403 A 1 HETATM 8 O O3B ATP . . . D 4 27.375 84.901 5.2 1 41.53 ? O3B ATP 403 A 1 HETATM 9 P PA ATP . . . D 4 26.942 82.67 7.73 1 30.79 ? PA ATP 403 A 1 HETATM 10 O O1A ATP . . . D 4 26.384 83.699 8.677 1 31.71 ? O1A ATP 403 A 1 HETATM 11 O O2A ATP . . . D 4 28.442 82.455 7.616 1 28.09 ? O2A ATP 403 A 1 HETATM 12 O O3A ATP . . . D 4 26.347 82.793 6.233 1 32.61 ? O3A ATP 403 A 1 HETATM 13 O O5' ATP . . . D 4 26.272 81.246 8.113 1 32.13 ? O5' ATP 403 A 1 HETATM 14 C C5' ATP . . . D 4 24.874 81.038 8.151 1 30.19 ? C5' ATP 403 A 1 HETATM 15 C C4' ATP . . . D 4 24.517 80.357 9.451 1 32.82 ? C4' ATP 403 A 1 HETATM 16 O O4' ATP . . . D 4 25.062 79.031 9.536 1 36.76 ? O4' ATP 403 A 1 HETATM 17 C C3' ATP . . . D 4 24.963 81.048 10.743 1 31.34 ? C3' ATP 403 A 1 HETATM 18 O O3' ATP . . . D 4 24.066 82.124 11.018 1 34.07 ? O3' ATP 403 A 1 HETATM 19 C C2' ATP . . . D 4 24.761 79.88 11.675 1 30.58 ? C2' ATP 403 A 1 HETATM 20 O O2' ATP . . . D 4 23.358 79.614 11.694 1 28.34 ? O2' ATP 403 A 1 HETATM 21 C C1' ATP . . . D 4 25.359 78.717 10.915 1 33.3 ? C1' ATP 403 A 1 HETATM 22 N N9 ATP . . . D 4 26.846 78.707 11.016 1 35.75 ? N9 ATP 403 A 1 HETATM 23 C C8 ATP . . . D 4 27.674 79.437 10.232 1 34.32 ? C8 ATP 403 A 1 HETATM 24 N N7 ATP . . . D 4 28.959 79.206 10.532 1 34.8 ? N7 ATP 403 A 1 HETATM 25 C C5 ATP . . . D 4 28.999 78.298 11.536 1 35.15 ? C5 ATP 403 A 1 HETATM 26 C C6 ATP . . . D 4 30.049 77.607 12.343 1 34.08 ? C6 ATP 403 A 1 HETATM 27 N N6 ATP . . . D 4 31.365 77.837 12.157 1 35.62 ? N6 ATP 403 A 1 HETATM 28 N N1 ATP . . . D 4 29.659 76.749 13.304 1 33.01 ? N1 ATP 403 A 1 HETATM 29 C C2 ATP . . . D 4 28.366 76.497 13.533 1 32.54 ? C2 ATP 403 A 1 HETATM 30 N N3 ATP . . . D 4 27.377 77.089 12.858 1 35.08 ? N3 ATP 403 A 1 HETATM 31 C C4 ATP . . . D 4 27.604 77.984 11.863 1 35.16 ? C4 ATP 403 A 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 31 #