data_8C1F
#
_model_server_result.job_id            8XYdljLt_DUBKIZjfPjQQw 
_model_server_result.datetime_utc      '2024-10-10 03:25:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8c1f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    8C1F 
#
_exptl.entry_id    8C1F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8C1F 
_cell.length_a            81.44 
_cell.length_b            81.44 
_cell.length_c            172.01 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8C1F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 151 A ASP 274 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
metalc ? metalc2 A OD1 ASP 151 A ASP 274 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc3 A OD2 ASP 151 A ASP 274 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
metalc ? metalc4 B O1B ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
metalc ? metalc5 B O1A ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc6 B O3B ADP . A ADP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? 
metalc ? metalc7 C MG MG . A MG 402 1_555 S O HOH . A HOH 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
metalc ? metalc8 C MG MG . A MG 402 1_555 S O HOH . A HOH 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? 
metalc ? metalc9 D MG MG . A MG 403 1_555 J O2 T5L . A T5L 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? 
metalc ? metalc10 D MG MG . A MG 403 1_555 S O HOH . A HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
metalc ? metalc11 D MG MG . A MG 403 1_555 S O HOH . A HOH 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     8C1F 
_atom_sites.fract_transf_matrix[1][1]    0.012279 
_atom_sites.fract_transf_matrix[1][2]    0.007089 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014179 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005814 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 401 1 ADP ADP . 
C 3 MG A 1 402 1 MG MG . 
D 3 MG A 1 403 2 MG MG . 
E 4 GOL A 1 404 1 GOL GOL . 
F 4 GOL A 1 405 2 GOL GOL . 
G 4 GOL A 1 406 4 GOL GOL . 
H 4 GOL A 1 407 5 GOL GOL . 
I 4 GOL A 1 408 6 GOL GOL . 
J 5 T5L A 1 409 1 T5L CHA . 
K 6 SO4 A 1 410 1 SO4 SO4 . 
L 6 SO4 A 1 411 2 SO4 SO4 . 
M 6 SO4 A 1 412 3 SO4 SO4 . 
N 6 SO4 A 1 413 5 SO4 SO4 . 
O 6 SO4 A 1 414 6 SO4 SO4 . 
P 6 SO4 A 1 415 7 SO4 SO4 . 
Q 7 DMS A 1 416 2 DMS DMS . 
R 8 T2O A 1 417 4000 T2O 531 . 
S 9 HOH A 1 501 151 HOH HOH . 
S 9 HOH A 2 502 163 HOH HOH . 
S 9 HOH A 3 503 12 HOH HOH . 
S 9 HOH A 4 504 165 HOH HOH . 
S 9 HOH A 5 505 143 HOH HOH . 
S 9 HOH A 6 506 10 HOH HOH . 
S 9 HOH A 7 507 100 HOH HOH . 
S 9 HOH A 8 508 15 HOH HOH . 
S 9 HOH A 9 509 35 HOH HOH . 
S 9 HOH A 10 510 164 HOH HOH . 
S 9 HOH A 11 511 149 HOH HOH . 
S 9 HOH A 12 512 18 HOH HOH . 
S 9 HOH A 13 513 42 HOH HOH . 
S 9 HOH A 14 514 21 HOH HOH . 
S 9 HOH A 15 515 150 HOH HOH . 
S 9 HOH A 16 516 146 HOH HOH . 
S 9 HOH A 17 517 31 HOH HOH . 
S 9 HOH A 18 518 97 HOH HOH . 
S 9 HOH A 19 519 141 HOH HOH . 
S 9 HOH A 20 520 87 HOH HOH . 
S 9 HOH A 21 521 23 HOH HOH . 
S 9 HOH A 22 522 19 HOH HOH . 
S 9 HOH A 23 523 13 HOH HOH . 
S 9 HOH A 24 524 38 HOH HOH . 
S 9 HOH A 25 525 142 HOH HOH . 
S 9 HOH A 26 526 47 HOH HOH . 
S 9 HOH A 27 527 166 HOH HOH . 
S 9 HOH A 28 528 40 HOH HOH . 
S 9 HOH A 29 529 24 HOH HOH . 
S 9 HOH A 30 530 153 HOH HOH . 
S 9 HOH A 31 531 43 HOH HOH . 
S 9 HOH A 32 532 139 HOH HOH . 
S 9 HOH A 33 533 156 HOH HOH . 
S 9 HOH A 34 534 6 HOH HOH . 
S 9 HOH A 35 535 83 HOH HOH . 
S 9 HOH A 36 536 36 HOH HOH . 
S 9 HOH A 37 537 8 HOH HOH . 
S 9 HOH A 38 538 123 HOH HOH . 
S 9 HOH A 39 539 96 HOH HOH . 
S 9 HOH A 40 540 152 HOH HOH . 
S 9 HOH A 41 541 28 HOH HOH . 
S 9 HOH A 42 542 4 HOH HOH . 
S 9 HOH A 43 543 27 HOH HOH . 
S 9 HOH A 44 544 148 HOH HOH . 
S 9 HOH A 45 545 48 HOH HOH . 
S 9 HOH A 46 546 124 HOH HOH . 
S 9 HOH A 47 547 50 HOH HOH . 
S 9 HOH A 48 548 53 HOH HOH . 
S 9 HOH A 49 549 91 HOH HOH . 
S 9 HOH A 50 550 73 HOH HOH . 
S 9 HOH A 51 551 25 HOH HOH . 
S 9 HOH A 52 552 9 HOH HOH . 
S 9 HOH A 53 553 86 HOH HOH . 
S 9 HOH A 54 554 17 HOH HOH . 
S 9 HOH A 55 555 127 HOH HOH . 
S 9 HOH A 56 556 34 HOH HOH . 
S 9 HOH A 57 557 57 HOH HOH . 
S 9 HOH A 58 558 29 HOH HOH . 
S 9 HOH A 59 559 16 HOH HOH . 
S 9 HOH A 60 560 51 HOH HOH . 
S 9 HOH A 61 561 75 HOH HOH . 
S 9 HOH A 62 562 46 HOH HOH . 
S 9 HOH A 63 563 59 HOH HOH . 
S 9 HOH A 64 564 11 HOH HOH . 
S 9 HOH A 65 565 160 HOH HOH . 
S 9 HOH A 66 566 41 HOH HOH . 
S 9 HOH A 67 567 72 HOH HOH . 
S 9 HOH A 68 568 105 HOH HOH . 
S 9 HOH A 69 569 32 HOH HOH . 
S 9 HOH A 70 570 45 HOH HOH . 
S 9 HOH A 71 571 56 HOH HOH . 
S 9 HOH A 72 572 147 HOH HOH . 
S 9 HOH A 73 573 98 HOH HOH . 
S 9 HOH A 74 574 60 HOH HOH . 
S 9 HOH A 75 575 78 HOH HOH . 
S 9 HOH A 76 576 61 HOH HOH . 
S 9 HOH A 77 577 81 HOH HOH . 
S 9 HOH A 78 578 89 HOH HOH . 
S 9 HOH A 79 579 74 HOH HOH . 
S 9 HOH A 80 580 84 HOH HOH . 
S 9 HOH A 81 581 104 HOH HOH . 
S 9 HOH A 82 582 157 HOH HOH . 
S 9 HOH A 83 583 138 HOH HOH . 
S 9 HOH A 84 584 82 HOH HOH . 
S 9 HOH A 85 585 119 HOH HOH . 
S 9 HOH A 86 586 67 HOH HOH . 
S 9 HOH A 87 587 113 HOH HOH . 
S 9 HOH A 88 588 161 HOH HOH . 
S 9 HOH A 89 589 117 HOH HOH . 
S 9 HOH A 90 590 64 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . B 2 -10.195 -23.837 4.808 1 36.24 ? PB ADP 401 A 1 
HETATM 2 O O1B ADP . . . B 2 -10.915 -24.797 3.838 1 35.34 ? O1B ADP 401 A 1 
HETATM 3 O O2B ADP . . . B 2 -9.632 -22.692 4.08 1 37.8 ? O2B ADP 401 A 1 
HETATM 4 O O3B ADP . . . B 2 -11.144 -23.41 5.884 1 36.82 ? O3B ADP 401 A 1 
HETATM 5 P PA ADP . . . B 2 -8.691 -26.017 6.035 1 31.71 ? PA ADP 401 A 1 
HETATM 6 O O1A ADP . . . B 2 -9.802 -26.923 5.561 1 30.15 ? O1A ADP 401 A 1 
HETATM 7 O O2A ADP . . . B 2 -8.637 -25.893 7.523 1 33.1 ? O2A ADP 401 A 1 
HETATM 8 O O3A ADP . . . B 2 -8.912 -24.568 5.405 1 31.28 ? O3A ADP 401 A 1 
HETATM 9 O O5' ADP . . . B 2 -7.342 -26.433 5.335 1 30.23 ? O5' ADP 401 A 1 
HETATM 10 C C5' ADP . . . B 2 -7.115 -26.422 3.898 1 34.23 ? C5' ADP 401 A 1 
HETATM 11 C C4' ADP . . . B 2 -6.378 -27.675 3.484 1 31.73 ? C4' ADP 401 A 1 
HETATM 12 O O4' ADP . . . B 2 -5.073 -27.714 4.1 1 31.79 ? O4' ADP 401 A 1 
HETATM 13 C C3' ADP . . . B 2 -7.03 -28.989 3.899 1 34.4 ? C3' ADP 401 A 1 
HETATM 14 O O3' ADP . . . B 2 -8.115 -29.357 3.064 1 36.11 ? O3' ADP 401 A 1 
HETATM 15 C C2' ADP . . . B 2 -5.838 -29.945 3.895 1 35.45 ? C2' ADP 401 A 1 
HETATM 16 O O2' ADP . . . B 2 -5.491 -30.297 2.556 1 33.2 ? O2' ADP 401 A 1 
HETATM 17 C C1' ADP . . . B 2 -4.756 -29.046 4.495 1 34.73 ? C1' ADP 401 A 1 
HETATM 18 N N9 ADP . . . B 2 -4.687 -29.109 5.959 1 35.43 ? N9 ADP 401 A 1 
HETATM 19 C C8 ADP . . . B 2 -5.39 -28.339 6.85 1 33.78 ? C8 ADP 401 A 1 
HETATM 20 N N7 ADP . . . B 2 -5.145 -28.616 8.11 1 34.93 ? N7 ADP 401 A 1 
HETATM 21 C C5 ADP . . . B 2 -4.197 -29.624 8.044 1 34.27 ? C5 ADP 401 A 1 
HETATM 22 C C6 ADP . . . B 2 -3.504 -30.341 9.043 1 36.26 ? C6 ADP 401 A 1 
HETATM 23 N N6 ADP . . . B 2 -3.674 -30.129 10.351 1 34.87 ? N6 ADP 401 A 1 
HETATM 24 N N1 ADP . . . B 2 -2.643 -31.311 8.643 1 33.17 ? N1 ADP 401 A 1 
HETATM 25 C C2 ADP . . . B 2 -2.494 -31.538 7.331 1 33.35 ? C2 ADP 401 A 1 
HETATM 26 N N3 ADP . . . B 2 -3.081 -30.915 6.301 1 31.58 ? N3 ADP 401 A 1 
HETATM 27 C C4 ADP . . . B 2 -3.92 -29.959 6.725 1 33.33 ? C4 ADP 401 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#