data_8C1F
#
_model_server_result.job_id            Y1ZGGp-W9YhbRARpU9s0Jg 
_model_server_result.datetime_utc      '2024-10-10 03:29:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8c1f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":416}' 
#
_entry.id    8C1F 
#
_exptl.entry_id    8C1F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8C1F 
_cell.length_a            81.44 
_cell.length_b            81.44 
_cell.length_c            172.01 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8C1F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      7 
_struct_asym.id                             Q 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 151 A ASP 274 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
metalc ? metalc2 A OD1 ASP 151 A ASP 274 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc3 A OD2 ASP 151 A ASP 274 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
metalc ? metalc4 B O1B ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
metalc ? metalc5 B O1A ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? 
metalc ? metalc6 B O3B ADP . A ADP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? 
metalc ? metalc7 C MG MG . A MG 402 1_555 S O HOH . A HOH 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
metalc ? metalc8 C MG MG . A MG 402 1_555 S O HOH . A HOH 540 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? 
metalc ? metalc9 D MG MG . A MG 403 1_555 J O2 T5L . A T5L 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? 
metalc ? metalc10 D MG MG . A MG 403 1_555 S O HOH . A HOH 515 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? 
metalc ? metalc11 D MG MG . A MG 403 1_555 S O HOH . A HOH 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 127 n n 
S C1 DMS sing 128 n n 
S C2 DMS sing 129 n n 
C1 H11 DMS sing 130 n n 
C1 H12 DMS sing 131 n n 
C1 H13 DMS sing 132 n n 
C2 H21 DMS sing 133 n n 
C2 H22 DMS sing 134 n n 
C2 H23 DMS sing 135 n n 
#
_atom_sites.entry_id                     8C1F 
_atom_sites.fract_transf_matrix[1][1]    0.012279 
_atom_sites.fract_transf_matrix[1][2]    0.007089 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014179 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005814 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 401 1 ADP ADP . 
C 3 MG A 1 402 1 MG MG . 
D 3 MG A 1 403 2 MG MG . 
E 4 GOL A 1 404 1 GOL GOL . 
F 4 GOL A 1 405 2 GOL GOL . 
G 4 GOL A 1 406 4 GOL GOL . 
H 4 GOL A 1 407 5 GOL GOL . 
I 4 GOL A 1 408 6 GOL GOL . 
J 5 T5L A 1 409 1 T5L CHA . 
K 6 SO4 A 1 410 1 SO4 SO4 . 
L 6 SO4 A 1 411 2 SO4 SO4 . 
M 6 SO4 A 1 412 3 SO4 SO4 . 
N 6 SO4 A 1 413 5 SO4 SO4 . 
O 6 SO4 A 1 414 6 SO4 SO4 . 
P 6 SO4 A 1 415 7 SO4 SO4 . 
Q 7 DMS A 1 416 2 DMS DMS . 
R 8 T2O A 1 417 4000 T2O 531 . 
S 9 HOH A 1 501 151 HOH HOH . 
S 9 HOH A 2 502 163 HOH HOH . 
S 9 HOH A 3 503 12 HOH HOH . 
S 9 HOH A 4 504 165 HOH HOH . 
S 9 HOH A 5 505 143 HOH HOH . 
S 9 HOH A 6 506 10 HOH HOH . 
S 9 HOH A 7 507 100 HOH HOH . 
S 9 HOH A 8 508 15 HOH HOH . 
S 9 HOH A 9 509 35 HOH HOH . 
S 9 HOH A 10 510 164 HOH HOH . 
S 9 HOH A 11 511 149 HOH HOH . 
S 9 HOH A 12 512 18 HOH HOH . 
S 9 HOH A 13 513 42 HOH HOH . 
S 9 HOH A 14 514 21 HOH HOH . 
S 9 HOH A 15 515 150 HOH HOH . 
S 9 HOH A 16 516 146 HOH HOH . 
S 9 HOH A 17 517 31 HOH HOH . 
S 9 HOH A 18 518 97 HOH HOH . 
S 9 HOH A 19 519 141 HOH HOH . 
S 9 HOH A 20 520 87 HOH HOH . 
S 9 HOH A 21 521 23 HOH HOH . 
S 9 HOH A 22 522 19 HOH HOH . 
S 9 HOH A 23 523 13 HOH HOH . 
S 9 HOH A 24 524 38 HOH HOH . 
S 9 HOH A 25 525 142 HOH HOH . 
S 9 HOH A 26 526 47 HOH HOH . 
S 9 HOH A 27 527 166 HOH HOH . 
S 9 HOH A 28 528 40 HOH HOH . 
S 9 HOH A 29 529 24 HOH HOH . 
S 9 HOH A 30 530 153 HOH HOH . 
S 9 HOH A 31 531 43 HOH HOH . 
S 9 HOH A 32 532 139 HOH HOH . 
S 9 HOH A 33 533 156 HOH HOH . 
S 9 HOH A 34 534 6 HOH HOH . 
S 9 HOH A 35 535 83 HOH HOH . 
S 9 HOH A 36 536 36 HOH HOH . 
S 9 HOH A 37 537 8 HOH HOH . 
S 9 HOH A 38 538 123 HOH HOH . 
S 9 HOH A 39 539 96 HOH HOH . 
S 9 HOH A 40 540 152 HOH HOH . 
S 9 HOH A 41 541 28 HOH HOH . 
S 9 HOH A 42 542 4 HOH HOH . 
S 9 HOH A 43 543 27 HOH HOH . 
S 9 HOH A 44 544 148 HOH HOH . 
S 9 HOH A 45 545 48 HOH HOH . 
S 9 HOH A 46 546 124 HOH HOH . 
S 9 HOH A 47 547 50 HOH HOH . 
S 9 HOH A 48 548 53 HOH HOH . 
S 9 HOH A 49 549 91 HOH HOH . 
S 9 HOH A 50 550 73 HOH HOH . 
S 9 HOH A 51 551 25 HOH HOH . 
S 9 HOH A 52 552 9 HOH HOH . 
S 9 HOH A 53 553 86 HOH HOH . 
S 9 HOH A 54 554 17 HOH HOH . 
S 9 HOH A 55 555 127 HOH HOH . 
S 9 HOH A 56 556 34 HOH HOH . 
S 9 HOH A 57 557 57 HOH HOH . 
S 9 HOH A 58 558 29 HOH HOH . 
S 9 HOH A 59 559 16 HOH HOH . 
S 9 HOH A 60 560 51 HOH HOH . 
S 9 HOH A 61 561 75 HOH HOH . 
S 9 HOH A 62 562 46 HOH HOH . 
S 9 HOH A 63 563 59 HOH HOH . 
S 9 HOH A 64 564 11 HOH HOH . 
S 9 HOH A 65 565 160 HOH HOH . 
S 9 HOH A 66 566 41 HOH HOH . 
S 9 HOH A 67 567 72 HOH HOH . 
S 9 HOH A 68 568 105 HOH HOH . 
S 9 HOH A 69 569 32 HOH HOH . 
S 9 HOH A 70 570 45 HOH HOH . 
S 9 HOH A 71 571 56 HOH HOH . 
S 9 HOH A 72 572 147 HOH HOH . 
S 9 HOH A 73 573 98 HOH HOH . 
S 9 HOH A 74 574 60 HOH HOH . 
S 9 HOH A 75 575 78 HOH HOH . 
S 9 HOH A 76 576 61 HOH HOH . 
S 9 HOH A 77 577 81 HOH HOH . 
S 9 HOH A 78 578 89 HOH HOH . 
S 9 HOH A 79 579 74 HOH HOH . 
S 9 HOH A 80 580 84 HOH HOH . 
S 9 HOH A 81 581 104 HOH HOH . 
S 9 HOH A 82 582 157 HOH HOH . 
S 9 HOH A 83 583 138 HOH HOH . 
S 9 HOH A 84 584 82 HOH HOH . 
S 9 HOH A 85 585 119 HOH HOH . 
S 9 HOH A 86 586 67 HOH HOH . 
S 9 HOH A 87 587 113 HOH HOH . 
S 9 HOH A 88 588 161 HOH HOH . 
S 9 HOH A 89 589 117 HOH HOH . 
S 9 HOH A 90 590 64 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . Q 7 3.748 -17.763 5.996 1 114.36 ? S DMS 416 A 1 
HETATM 2 O O DMS . . . Q 7 4.915 -17.56 5.129 1 114.93 ? O DMS 416 A 1 
HETATM 3 C C1 DMS . . . Q 7 4.127 -16.901 7.496 1 113.75 ? C1 DMS 416 A 1 
HETATM 4 C C2 DMS . . . Q 7 2.517 -16.689 5.322 1 113.86 ? C2 DMS 416 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           281 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#