data_8C1G
#
_model_server_result.job_id            vhwUS5lvaUHsP0L5t752EQ 
_model_server_result.datetime_utc      '2024-10-10 03:24:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8c1g 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    8C1G 
#
_exptl.entry_id    8C1G 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8C1G 
_cell.length_a            80.82 
_cell.length_b            80.82 
_cell.length_c            164.674 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8C1G 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD2 ASP 151 A ASP 274 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? 
metalc ? metalc2 A OD1 ASP 151 A ASP 274 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc3 A OD2 ASP 151 A ASP 274 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
metalc ? metalc4 C O1B ADP . A ADP 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? 
metalc ? metalc5 C O1A ADP . A ADP 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? 
metalc ? metalc6 C O3B ADP . A ADP 402 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc7 D MG MG . A MG 403 1_555 R O HOH . A HOH 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc8 D MG MG . A MG 403 1_555 R O HOH . A HOH 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc9 E MG MG . A MG 404 1_555 G O2 T5L . A T5L 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? 
metalc ? metalc10 E MG MG . A MG 404 1_555 R O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? 
metalc ? metalc11 E MG MG . A MG 404 1_555 R O HOH . A HOH 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 7 n n 
PB O2B ADP sing 8 n n 
PB O3B ADP sing 9 n n 
PB O3A ADP sing 10 n n 
O2B HOB2 ADP sing 11 n n 
O3B HOB3 ADP sing 12 n n 
PA O1A ADP doub 13 n n 
PA O2A ADP sing 14 n n 
PA O3A ADP sing 15 n n 
PA O5' ADP sing 16 n n 
O2A HOA2 ADP sing 17 n n 
O5' C5' ADP sing 18 n n 
C5' C4' ADP sing 19 n n 
C5' "H5'1" ADP sing 20 n n 
C5' "H5'2" ADP sing 21 n n 
C4' O4' ADP sing 22 n n 
C4' C3' ADP sing 23 n n 
C4' H4' ADP sing 24 n n 
O4' C1' ADP sing 25 n n 
C3' O3' ADP sing 26 n n 
C3' C2' ADP sing 27 n n 
C3' H3' ADP sing 28 n n 
O3' HO3' ADP sing 29 n n 
C2' O2' ADP sing 30 n n 
C2' C1' ADP sing 31 n n 
C2' H2' ADP sing 32 n n 
O2' HO2' ADP sing 33 n n 
C1' N9 ADP sing 34 n n 
C1' H1' ADP sing 35 n n 
N9 C8 ADP sing 36 n y 
N9 C4 ADP sing 37 n y 
C8 N7 ADP doub 38 n y 
C8 H8 ADP sing 39 n n 
N7 C5 ADP sing 40 n y 
C5 C6 ADP sing 41 n y 
C5 C4 ADP doub 42 n y 
C6 N6 ADP sing 43 n n 
C6 N1 ADP doub 44 n y 
N6 HN61 ADP sing 45 n n 
N6 HN62 ADP sing 46 n n 
N1 C2 ADP sing 47 n y 
C2 N3 ADP doub 48 n y 
C2 H2 ADP sing 49 n n 
N3 C4 ADP sing 50 n y 
#
_atom_sites.entry_id                     8C1G 
_atom_sites.fract_transf_matrix[1][1]    0.012373 
_atom_sites.fract_transf_matrix[1][2]    0.007144 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014287 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006073 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 T3I A 1 401 4000 T3I 562 . 
C 3 ADP A 1 402 1 ADP ADP . 
D 4 MG A 1 403 1 MG MG . 
E 4 MG A 1 404 2 MG MG . 
F 5 GOL A 1 405 1 GOL GOL . 
G 6 T5L A 1 406 1 T5L CHA . 
H 7 SO4 A 1 407 1 SO4 SO4 . 
I 7 SO4 A 1 408 2 SO4 SO4 . 
J 7 SO4 A 1 409 3 SO4 SO4 . 
K 7 SO4 A 1 410 5 SO4 SO4 . 
L 7 SO4 A 1 411 6 SO4 SO4 . 
M 7 SO4 A 1 412 7 SO4 SO4 . 
N 7 SO4 A 1 413 8 SO4 SO4 . 
O 8 DMS A 1 414 1 DMS DMS . 
P 8 DMS A 1 415 2 DMS DMS . 
Q 9 ACT A 1 416 1 ACT ACT . 
R 10 HOH A 1 501 9 HOH HOH . 
R 10 HOH A 2 502 115 HOH HOH . 
R 10 HOH A 3 503 6 HOH HOH . 
R 10 HOH A 4 504 4 HOH HOH . 
R 10 HOH A 5 505 111 HOH HOH . 
R 10 HOH A 6 506 118 HOH HOH . 
R 10 HOH A 7 507 156 HOH HOH . 
R 10 HOH A 8 508 14 HOH HOH . 
R 10 HOH A 9 509 106 HOH HOH . 
R 10 HOH A 10 510 108 HOH HOH . 
R 10 HOH A 11 511 7 HOH HOH . 
R 10 HOH A 12 512 109 HOH HOH . 
R 10 HOH A 13 513 77 HOH HOH . 
R 10 HOH A 14 514 54 HOH HOH . 
R 10 HOH A 15 515 43 HOH HOH . 
R 10 HOH A 16 516 81 HOH HOH . 
R 10 HOH A 17 517 153 HOH HOH . 
R 10 HOH A 18 518 42 HOH HOH . 
R 10 HOH A 19 519 157 HOH HOH . 
R 10 HOH A 20 520 147 HOH HOH . 
R 10 HOH A 21 521 141 HOH HOH . 
R 10 HOH A 22 522 18 HOH HOH . 
R 10 HOH A 23 523 76 HOH HOH . 
R 10 HOH A 24 524 16 HOH HOH . 
R 10 HOH A 25 525 91 HOH HOH . 
R 10 HOH A 26 526 78 HOH HOH . 
R 10 HOH A 27 527 19 HOH HOH . 
R 10 HOH A 28 528 113 HOH HOH . 
R 10 HOH A 29 529 27 HOH HOH . 
R 10 HOH A 30 530 48 HOH HOH . 
R 10 HOH A 31 531 110 HOH HOH . 
R 10 HOH A 32 532 68 HOH HOH . 
R 10 HOH A 33 533 51 HOH HOH . 
R 10 HOH A 34 534 160 HOH HOH . 
R 10 HOH A 35 535 112 HOH HOH . 
R 10 HOH A 36 536 140 HOH HOH . 
R 10 HOH A 37 537 3 HOH HOH . 
R 10 HOH A 38 538 5 HOH HOH . 
R 10 HOH A 39 539 131 HOH HOH . 
R 10 HOH A 40 540 13 HOH HOH . 
R 10 HOH A 41 541 23 HOH HOH . 
R 10 HOH A 42 542 162 HOH HOH . 
R 10 HOH A 43 543 36 HOH HOH . 
R 10 HOH A 44 544 25 HOH HOH . 
R 10 HOH A 45 545 21 HOH HOH . 
R 10 HOH A 46 546 41 HOH HOH . 
R 10 HOH A 47 547 2 HOH HOH . 
R 10 HOH A 48 548 24 HOH HOH . 
R 10 HOH A 49 549 164 HOH HOH . 
R 10 HOH A 50 550 20 HOH HOH . 
R 10 HOH A 51 551 69 HOH HOH . 
R 10 HOH A 52 552 47 HOH HOH . 
R 10 HOH A 53 553 124 HOH HOH . 
R 10 HOH A 54 554 79 HOH HOH . 
R 10 HOH A 55 555 35 HOH HOH . 
R 10 HOH A 56 556 105 HOH HOH . 
R 10 HOH A 57 557 34 HOH HOH . 
R 10 HOH A 58 558 80 HOH HOH . 
R 10 HOH A 59 559 22 HOH HOH . 
R 10 HOH A 60 560 17 HOH HOH . 
R 10 HOH A 61 561 26 HOH HOH . 
R 10 HOH A 62 562 1 HOH HOH . 
R 10 HOH A 63 563 107 HOH HOH . 
R 10 HOH A 64 564 39 HOH HOH . 
R 10 HOH A 65 565 102 HOH HOH . 
R 10 HOH A 66 566 103 HOH HOH . 
R 10 HOH A 67 567 161 HOH HOH . 
R 10 HOH A 68 568 116 HOH HOH . 
R 10 HOH A 69 569 50 HOH HOH . 
R 10 HOH A 70 570 8 HOH HOH . 
R 10 HOH A 71 571 10 HOH HOH . 
R 10 HOH A 72 572 114 HOH HOH . 
R 10 HOH A 73 573 65 HOH HOH . 
R 10 HOH A 74 574 40 HOH HOH . 
R 10 HOH A 75 575 104 HOH HOH . 
R 10 HOH A 76 576 32 HOH HOH . 
R 10 HOH A 77 577 38 HOH HOH . 
R 10 HOH A 78 578 37 HOH HOH . 
R 10 HOH A 79 579 151 HOH HOH . 
R 10 HOH A 80 580 29 HOH HOH . 
R 10 HOH A 81 581 61 HOH HOH . 
R 10 HOH A 82 582 15 HOH HOH . 
R 10 HOH A 83 583 12 HOH HOH . 
R 10 HOH A 84 584 73 HOH HOH . 
R 10 HOH A 85 585 57 HOH HOH . 
R 10 HOH A 86 586 31 HOH HOH . 
R 10 HOH A 87 587 134 HOH HOH . 
R 10 HOH A 88 588 46 HOH HOH . 
R 10 HOH A 89 589 53 HOH HOH . 
R 10 HOH A 90 590 133 HOH HOH . 
R 10 HOH A 91 591 143 HOH HOH . 
R 10 HOH A 92 592 142 HOH HOH . 
R 10 HOH A 93 593 45 HOH HOH . 
R 10 HOH A 94 594 63 HOH HOH . 
R 10 HOH A 95 595 44 HOH HOH . 
R 10 HOH A 96 596 56 HOH HOH . 
R 10 HOH A 97 597 138 HOH HOH . 
R 10 HOH A 98 598 97 HOH HOH . 
R 10 HOH A 99 599 11 HOH HOH . 
R 10 HOH A 100 600 67 HOH HOH . 
R 10 HOH A 101 601 117 HOH HOH . 
R 10 HOH A 102 602 121 HOH HOH . 
R 10 HOH A 103 603 70 HOH HOH . 
R 10 HOH A 104 604 145 HOH HOH . 
R 10 HOH A 105 605 163 HOH HOH . 
R 10 HOH A 106 606 60 HOH HOH . 
R 10 HOH A 107 607 49 HOH HOH . 
R 10 HOH A 108 608 137 HOH HOH . 
R 10 HOH A 109 609 148 HOH HOH . 
R 10 HOH A 110 610 136 HOH HOH . 
R 10 HOH A 111 611 87 HOH HOH . 
R 10 HOH A 112 612 52 HOH HOH . 
R 10 HOH A 113 613 132 HOH HOH . 
R 10 HOH A 114 614 83 HOH HOH . 
R 10 HOH A 115 615 62 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . C 3 -9.981 -23.534 4.742 1 34.87 ? PB ADP 402 A 1 
HETATM 2 O O1B ADP . . . C 3 -10.654 -24.524 3.784 1 36.73 ? O1B ADP 402 A 1 
HETATM 3 O O2B ADP . . . C 3 -9.504 -22.404 3.898 1 34.29 ? O2B ADP 402 A 1 
HETATM 4 O O3B ADP . . . C 3 -10.888 -23.15 5.85 1 32.66 ? O3B ADP 402 A 1 
HETATM 5 P PA ADP . . . C 3 -8.361 -25.639 6.007 1 31.2 ? PA ADP 402 A 1 
HETATM 6 O O1A ADP . . . C 3 -9.452 -26.625 5.604 1 31.12 ? O1A ADP 402 A 1 
HETATM 7 O O2A ADP . . . C 3 -8.274 -25.584 7.494 1 29.06 ? O2A ADP 402 A 1 
HETATM 8 O O3A ADP . . . C 3 -8.666 -24.213 5.359 1 33.83 ? O3A ADP 402 A 1 
HETATM 9 O O5' ADP . . . C 3 -6.997 -26.141 5.353 1 28.5 ? O5' ADP 402 A 1 
HETATM 10 C C5' ADP . . . C 3 -6.748 -26.114 3.918 1 31.28 ? C5' ADP 402 A 1 
HETATM 11 C C4' ADP . . . C 3 -6.081 -27.397 3.474 1 31.21 ? C4' ADP 402 A 1 
HETATM 12 O O4' ADP . . . C 3 -4.743 -27.483 4.02 1 29.45 ? O4' ADP 402 A 1 
HETATM 13 C C3' ADP . . . C 3 -6.761 -28.692 3.909 1 29.55 ? C3' ADP 402 A 1 
HETATM 14 O O3' ADP . . . C 3 -7.871 -29.049 3.088 1 31.38 ? O3' ADP 402 A 1 
HETATM 15 C C2' ADP . . . C 3 -5.597 -29.689 3.845 1 33.3 ? C2' ADP 402 A 1 
HETATM 16 O O2' ADP . . . C 3 -5.286 -30.06 2.497 1 33.78 ? O2' ADP 402 A 1 
HETATM 17 C C1' ADP . . . C 3 -4.46 -28.826 4.41 1 30.06 ? C1' ADP 402 A 1 
HETATM 18 N N9 ADP . . . C 3 -4.371 -28.868 5.869 1 29.65 ? N9 ADP 402 A 1 
HETATM 19 C C8 ADP . . . C 3 -5.067 -28.076 6.735 1 27.89 ? C8 ADP 402 A 1 
HETATM 20 N N7 ADP . . . C 3 -4.796 -28.298 8.004 1 31.85 ? N7 ADP 402 A 1 
HETATM 21 C C5 ADP . . . C 3 -3.839 -29.299 7.958 1 28.75 ? C5 ADP 402 A 1 
HETATM 22 C C6 ADP . . . C 3 -3.141 -29.977 8.974 1 30.36 ? C6 ADP 402 A 1 
HETATM 23 N N6 ADP . . . C 3 -3.288 -29.718 10.28 1 29.66 ? N6 ADP 402 A 1 
HETATM 24 N N1 ADP . . . C 3 -2.282 -30.952 8.598 1 26.32 ? N1 ADP 402 A 1 
HETATM 25 C C2 ADP . . . C 3 -2.147 -31.232 7.294 1 28.29 ? C2 ADP 402 A 1 
HETATM 26 N N3 ADP . . . C 3 -2.746 -30.657 6.247 1 27.94 ? N3 ADP 402 A 1 
HETATM 27 C C4 ADP . . . C 3 -3.582 -29.676 6.647 1 30.83 ? C4 ADP 402 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           267 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#