data_8C1G # _model_server_result.job_id DiyiG-fofvIh8afZNQ91Zg _model_server_result.datetime_utc '2024-10-10 03:27:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c1g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":414}' # _entry.id 8C1G # _exptl.entry_id 8C1G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8C1G _cell.length_a 80.82 _cell.length_b 80.82 _cell.length_c 164.674 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C1G _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 O N N ? 8 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 151 A ASP 274 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc2 A OD1 ASP 151 A ASP 274 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc3 A OD2 ASP 151 A ASP 274 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? metalc ? metalc4 C O1B ADP . A ADP 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc5 C O1A ADP . A ADP 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc6 C O3B ADP . A ADP 402 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc7 D MG MG . A MG 403 1_555 R O HOH . A HOH 566 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc8 D MG MG . A MG 403 1_555 R O HOH . A HOH 575 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc9 E MG MG . A MG 404 1_555 G O2 T5L . A T5L 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.915 ? metalc ? metalc10 E MG MG . A MG 404 1_555 R O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.138 ? metalc ? metalc11 E MG MG . A MG 404 1_555 R O HOH . A HOH 556 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 133 n n S C1 DMS sing 134 n n S C2 DMS sing 135 n n C1 H11 DMS sing 136 n n C1 H12 DMS sing 137 n n C1 H13 DMS sing 138 n n C2 H21 DMS sing 139 n n C2 H22 DMS sing 140 n n C2 H23 DMS sing 141 n n # _atom_sites.entry_id 8C1G _atom_sites.fract_transf_matrix[1][1] 0.012373 _atom_sites.fract_transf_matrix[1][2] 0.007144 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014287 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006073 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 T3I A 1 401 4000 T3I 562 . C 3 ADP A 1 402 1 ADP ADP . D 4 MG A 1 403 1 MG MG . E 4 MG A 1 404 2 MG MG . F 5 GOL A 1 405 1 GOL GOL . G 6 T5L A 1 406 1 T5L CHA . H 7 SO4 A 1 407 1 SO4 SO4 . I 7 SO4 A 1 408 2 SO4 SO4 . J 7 SO4 A 1 409 3 SO4 SO4 . K 7 SO4 A 1 410 5 SO4 SO4 . L 7 SO4 A 1 411 6 SO4 SO4 . M 7 SO4 A 1 412 7 SO4 SO4 . N 7 SO4 A 1 413 8 SO4 SO4 . O 8 DMS A 1 414 1 DMS DMS . P 8 DMS A 1 415 2 DMS DMS . Q 9 ACT A 1 416 1 ACT ACT . R 10 HOH A 1 501 9 HOH HOH . R 10 HOH A 2 502 115 HOH HOH . R 10 HOH A 3 503 6 HOH HOH . R 10 HOH A 4 504 4 HOH HOH . R 10 HOH A 5 505 111 HOH HOH . R 10 HOH A 6 506 118 HOH HOH . R 10 HOH A 7 507 156 HOH HOH . R 10 HOH A 8 508 14 HOH HOH . R 10 HOH A 9 509 106 HOH HOH . R 10 HOH A 10 510 108 HOH HOH . R 10 HOH A 11 511 7 HOH HOH . R 10 HOH A 12 512 109 HOH HOH . R 10 HOH A 13 513 77 HOH HOH . R 10 HOH A 14 514 54 HOH HOH . R 10 HOH A 15 515 43 HOH HOH . R 10 HOH A 16 516 81 HOH HOH . R 10 HOH A 17 517 153 HOH HOH . R 10 HOH A 18 518 42 HOH HOH . R 10 HOH A 19 519 157 HOH HOH . R 10 HOH A 20 520 147 HOH HOH . R 10 HOH A 21 521 141 HOH HOH . R 10 HOH A 22 522 18 HOH HOH . R 10 HOH A 23 523 76 HOH HOH . R 10 HOH A 24 524 16 HOH HOH . R 10 HOH A 25 525 91 HOH HOH . R 10 HOH A 26 526 78 HOH HOH . R 10 HOH A 27 527 19 HOH HOH . R 10 HOH A 28 528 113 HOH HOH . R 10 HOH A 29 529 27 HOH HOH . R 10 HOH A 30 530 48 HOH HOH . R 10 HOH A 31 531 110 HOH HOH . R 10 HOH A 32 532 68 HOH HOH . R 10 HOH A 33 533 51 HOH HOH . R 10 HOH A 34 534 160 HOH HOH . R 10 HOH A 35 535 112 HOH HOH . R 10 HOH A 36 536 140 HOH HOH . R 10 HOH A 37 537 3 HOH HOH . R 10 HOH A 38 538 5 HOH HOH . R 10 HOH A 39 539 131 HOH HOH . R 10 HOH A 40 540 13 HOH HOH . R 10 HOH A 41 541 23 HOH HOH . R 10 HOH A 42 542 162 HOH HOH . R 10 HOH A 43 543 36 HOH HOH . R 10 HOH A 44 544 25 HOH HOH . R 10 HOH A 45 545 21 HOH HOH . R 10 HOH A 46 546 41 HOH HOH . R 10 HOH A 47 547 2 HOH HOH . R 10 HOH A 48 548 24 HOH HOH . R 10 HOH A 49 549 164 HOH HOH . R 10 HOH A 50 550 20 HOH HOH . R 10 HOH A 51 551 69 HOH HOH . R 10 HOH A 52 552 47 HOH HOH . R 10 HOH A 53 553 124 HOH HOH . R 10 HOH A 54 554 79 HOH HOH . R 10 HOH A 55 555 35 HOH HOH . R 10 HOH A 56 556 105 HOH HOH . R 10 HOH A 57 557 34 HOH HOH . R 10 HOH A 58 558 80 HOH HOH . R 10 HOH A 59 559 22 HOH HOH . R 10 HOH A 60 560 17 HOH HOH . R 10 HOH A 61 561 26 HOH HOH . R 10 HOH A 62 562 1 HOH HOH . R 10 HOH A 63 563 107 HOH HOH . R 10 HOH A 64 564 39 HOH HOH . R 10 HOH A 65 565 102 HOH HOH . R 10 HOH A 66 566 103 HOH HOH . R 10 HOH A 67 567 161 HOH HOH . R 10 HOH A 68 568 116 HOH HOH . R 10 HOH A 69 569 50 HOH HOH . R 10 HOH A 70 570 8 HOH HOH . R 10 HOH A 71 571 10 HOH HOH . R 10 HOH A 72 572 114 HOH HOH . R 10 HOH A 73 573 65 HOH HOH . R 10 HOH A 74 574 40 HOH HOH . R 10 HOH A 75 575 104 HOH HOH . R 10 HOH A 76 576 32 HOH HOH . R 10 HOH A 77 577 38 HOH HOH . R 10 HOH A 78 578 37 HOH HOH . R 10 HOH A 79 579 151 HOH HOH . R 10 HOH A 80 580 29 HOH HOH . R 10 HOH A 81 581 61 HOH HOH . R 10 HOH A 82 582 15 HOH HOH . R 10 HOH A 83 583 12 HOH HOH . R 10 HOH A 84 584 73 HOH HOH . R 10 HOH A 85 585 57 HOH HOH . R 10 HOH A 86 586 31 HOH HOH . R 10 HOH A 87 587 134 HOH HOH . R 10 HOH A 88 588 46 HOH HOH . R 10 HOH A 89 589 53 HOH HOH . R 10 HOH A 90 590 133 HOH HOH . R 10 HOH A 91 591 143 HOH HOH . R 10 HOH A 92 592 142 HOH HOH . R 10 HOH A 93 593 45 HOH HOH . R 10 HOH A 94 594 63 HOH HOH . R 10 HOH A 95 595 44 HOH HOH . R 10 HOH A 96 596 56 HOH HOH . R 10 HOH A 97 597 138 HOH HOH . R 10 HOH A 98 598 97 HOH HOH . R 10 HOH A 99 599 11 HOH HOH . R 10 HOH A 100 600 67 HOH HOH . R 10 HOH A 101 601 117 HOH HOH . R 10 HOH A 102 602 121 HOH HOH . R 10 HOH A 103 603 70 HOH HOH . R 10 HOH A 104 604 145 HOH HOH . R 10 HOH A 105 605 163 HOH HOH . R 10 HOH A 106 606 60 HOH HOH . R 10 HOH A 107 607 49 HOH HOH . R 10 HOH A 108 608 137 HOH HOH . R 10 HOH A 109 609 148 HOH HOH . R 10 HOH A 110 610 136 HOH HOH . R 10 HOH A 111 611 87 HOH HOH . R 10 HOH A 112 612 52 HOH HOH . R 10 HOH A 113 613 132 HOH HOH . R 10 HOH A 114 614 83 HOH HOH . R 10 HOH A 115 615 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . O 8 -26.349 -38.438 20.026 1 90.65 ? S DMS 414 A 1 HETATM 2 O O DMS . . . O 8 -26.671 -38.08 18.625 1 88.01 ? O DMS 414 A 1 HETATM 3 C C1 DMS . . . O 8 -25.417 -39.925 20.007 1 90.73 ? C1 DMS 414 A 1 HETATM 4 C C2 DMS . . . O 8 -25.058 -37.348 20.51 1 91.08 ? C2 DMS 414 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #