data_8C1H # _model_server_result.job_id Q-ZWzwqR-vuR4Wm-yCwa7Q _model_server_result.datetime_utc '2024-11-28 04:29:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c1h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 8C1H # _exptl.entry_id 8C1H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8C1H _cell.length_a 81.025 _cell.length_b 81.025 _cell.length_c 165.624 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C1H _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 151 A ASP 274 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? metalc ? metalc2 A OD1 ASP 151 A ASP 274 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.953 ? metalc ? metalc3 A OD2 ASP 151 A ASP 274 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc4 C O1B ADP . A ADP 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc5 C O1A ADP . A ADP 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc6 C O3B ADP . A ADP 402 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc7 D MG MG . A MG 403 1_555 Q O HOH . A HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc8 D MG MG . A MG 403 1_555 Q O HOH . A HOH 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc9 E MG MG . A MG 404 1_555 F O2 T5L . A T5L 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.942 ? metalc ? metalc10 E MG MG . A MG 404 1_555 Q O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc11 E MG MG . A MG 404 1_555 Q O HOH . A HOH 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 7 n n PB O2B ADP sing 8 n n PB O3B ADP sing 9 n n PB O3A ADP sing 10 n n O2B HOB2 ADP sing 11 n n O3B HOB3 ADP sing 12 n n PA O1A ADP doub 13 n n PA O2A ADP sing 14 n n PA O3A ADP sing 15 n n PA O5' ADP sing 16 n n O2A HOA2 ADP sing 17 n n O5' C5' ADP sing 18 n n C5' C4' ADP sing 19 n n C5' "H5'1" ADP sing 20 n n C5' "H5'2" ADP sing 21 n n C4' O4' ADP sing 22 n n C4' C3' ADP sing 23 n n C4' H4' ADP sing 24 n n O4' C1' ADP sing 25 n n C3' O3' ADP sing 26 n n C3' C2' ADP sing 27 n n C3' H3' ADP sing 28 n n O3' HO3' ADP sing 29 n n C2' O2' ADP sing 30 n n C2' C1' ADP sing 31 n n C2' H2' ADP sing 32 n n O2' HO2' ADP sing 33 n n C1' N9 ADP sing 34 n n C1' H1' ADP sing 35 n n N9 C8 ADP sing 36 n y N9 C4 ADP sing 37 n y C8 N7 ADP doub 38 n y C8 H8 ADP sing 39 n n N7 C5 ADP sing 40 n y C5 C6 ADP sing 41 n y C5 C4 ADP doub 42 n y C6 N6 ADP sing 43 n n C6 N1 ADP doub 44 n y N6 HN61 ADP sing 45 n n N6 HN62 ADP sing 46 n n N1 C2 ADP sing 47 n y C2 N3 ADP doub 48 n y C2 H2 ADP sing 49 n n N3 C4 ADP sing 50 n y # _atom_sites.entry_id 8C1H _atom_sites.fract_transf_matrix[1][1] 0.012342 _atom_sites.fract_transf_matrix[1][2] 0.007126 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014251 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006038 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 T3U A 1 401 4000 T3U 581 . C 3 ADP A 1 402 1 ADP ADP . D 4 MG A 1 403 1 MG MG . E 4 MG A 1 404 2 MG MG . F 5 T5L A 1 405 1 T5L CHA . G 6 SO4 A 1 406 1 SO4 SO4 . H 6 SO4 A 1 407 2 SO4 SO4 . I 6 SO4 A 1 408 3 SO4 SO4 . J 6 SO4 A 1 409 5 SO4 SO4 . K 6 SO4 A 1 410 6 SO4 SO4 . L 7 DMS A 1 411 1 DMS DMS . M 7 DMS A 1 412 2 DMS DMS . N 8 ACT A 1 413 1 ACT ACT . O 9 CL A 1 414 1 CL CL . P 9 CL A 1 415 2 CL CL . Q 10 HOH A 1 501 8 HOH HOH . Q 10 HOH A 2 502 83 HOH HOH . Q 10 HOH A 3 503 61 HOH HOH . Q 10 HOH A 4 504 2 HOH HOH . Q 10 HOH A 5 505 81 HOH HOH . Q 10 HOH A 6 506 17 HOH HOH . Q 10 HOH A 7 507 84 HOH HOH . Q 10 HOH A 8 508 5 HOH HOH . Q 10 HOH A 9 509 3 HOH HOH . Q 10 HOH A 10 510 62 HOH HOH . Q 10 HOH A 11 511 6 HOH HOH . Q 10 HOH A 12 512 23 HOH HOH . Q 10 HOH A 13 513 15 HOH HOH . Q 10 HOH A 14 514 36 HOH HOH . Q 10 HOH A 15 515 13 HOH HOH . Q 10 HOH A 16 516 16 HOH HOH . Q 10 HOH A 17 517 60 HOH HOH . Q 10 HOH A 18 518 42 HOH HOH . Q 10 HOH A 19 519 47 HOH HOH . Q 10 HOH A 20 520 87 HOH HOH . Q 10 HOH A 21 521 114 HOH HOH . Q 10 HOH A 22 522 113 HOH HOH . Q 10 HOH A 23 523 20 HOH HOH . Q 10 HOH A 24 524 12 HOH HOH . Q 10 HOH A 25 525 85 HOH HOH . Q 10 HOH A 26 526 80 HOH HOH . Q 10 HOH A 27 527 77 HOH HOH . Q 10 HOH A 28 528 33 HOH HOH . Q 10 HOH A 29 529 4 HOH HOH . Q 10 HOH A 30 530 63 HOH HOH . Q 10 HOH A 31 531 44 HOH HOH . Q 10 HOH A 32 532 18 HOH HOH . Q 10 HOH A 33 533 26 HOH HOH . Q 10 HOH A 34 534 40 HOH HOH . Q 10 HOH A 35 535 9 HOH HOH . Q 10 HOH A 36 536 34 HOH HOH . Q 10 HOH A 37 537 21 HOH HOH . Q 10 HOH A 38 538 79 HOH HOH . Q 10 HOH A 39 539 7 HOH HOH . Q 10 HOH A 40 540 1 HOH HOH . Q 10 HOH A 41 541 24 HOH HOH . Q 10 HOH A 42 542 82 HOH HOH . Q 10 HOH A 43 543 71 HOH HOH . Q 10 HOH A 44 544 48 HOH HOH . Q 10 HOH A 45 545 99 HOH HOH . Q 10 HOH A 46 546 32 HOH HOH . Q 10 HOH A 47 547 35 HOH HOH . Q 10 HOH A 48 548 29 HOH HOH . Q 10 HOH A 49 549 22 HOH HOH . Q 10 HOH A 50 550 14 HOH HOH . Q 10 HOH A 51 551 54 HOH HOH . Q 10 HOH A 52 552 10 HOH HOH . Q 10 HOH A 53 553 11 HOH HOH . Q 10 HOH A 54 554 56 HOH HOH . Q 10 HOH A 55 555 112 HOH HOH . Q 10 HOH A 56 556 28 HOH HOH . Q 10 HOH A 57 557 30 HOH HOH . Q 10 HOH A 58 558 39 HOH HOH . Q 10 HOH A 59 559 50 HOH HOH . Q 10 HOH A 60 560 52 HOH HOH . Q 10 HOH A 61 561 53 HOH HOH . Q 10 HOH A 62 562 37 HOH HOH . Q 10 HOH A 63 563 64 HOH HOH . Q 10 HOH A 64 564 88 HOH HOH . Q 10 HOH A 65 565 43 HOH HOH . Q 10 HOH A 66 566 31 HOH HOH . Q 10 HOH A 67 567 25 HOH HOH . Q 10 HOH A 68 568 97 HOH HOH . Q 10 HOH A 69 569 106 HOH HOH . Q 10 HOH A 70 570 41 HOH HOH . Q 10 HOH A 71 571 91 HOH HOH . Q 10 HOH A 72 572 115 HOH HOH . Q 10 HOH A 73 573 107 HOH HOH . Q 10 HOH A 74 574 109 HOH HOH . Q 10 HOH A 75 575 65 HOH HOH . Q 10 HOH A 76 576 51 HOH HOH . Q 10 HOH A 77 577 76 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . C 3 -9.788 -23.607 4.733 1 53.5 ? PB ADP 402 A 1 HETATM 2 O O1B ADP . . . C 3 -10.597 -24.601 3.826 1 53.58 ? O1B ADP 402 A 1 HETATM 3 O O2B ADP . . . C 3 -9.288 -22.523 3.836 1 51.82 ? O2B ADP 402 A 1 HETATM 4 O O3B ADP . . . C 3 -10.563 -23.088 5.935 1 48.21 ? O3B ADP 402 A 1 HETATM 5 P PA ADP . . . C 3 -8.251 -25.778 6.009 1 46.15 ? PA ADP 402 A 1 HETATM 6 O O1A ADP . . . C 3 -9.375 -26.767 5.72 1 41.55 ? O1A ADP 402 A 1 HETATM 7 O O2A ADP . . . C 3 -8.027 -25.555 7.468 1 43.37 ? O2A ADP 402 A 1 HETATM 8 O O3A ADP . . . C 3 -8.504 -24.378 5.28 1 50.57 ? O3A ADP 402 A 1 HETATM 9 O O5' ADP . . . C 3 -6.889 -26.217 5.295 1 48.6 ? O5' ADP 402 A 1 HETATM 10 C C5' ADP . . . C 3 -6.617 -26.218 3.878 1 48.1 ? C5' ADP 402 A 1 HETATM 11 C C4' ADP . . . C 3 -5.962 -27.526 3.516 1 45 ? C4' ADP 402 A 1 HETATM 12 O O4' ADP . . . C 3 -4.628 -27.6 4.069 1 41.13 ? O4' ADP 402 A 1 HETATM 13 C C3' ADP . . . C 3 -6.636 -28.791 4.034 1 47.28 ? C3' ADP 402 A 1 HETATM 14 O O3' ADP . . . C 3 -7.823 -29.128 3.327 1 49.43 ? O3' ADP 402 A 1 HETATM 15 C C2' ADP . . . C 3 -5.487 -29.792 3.919 1 48.21 ? C2' ADP 402 A 1 HETATM 16 O O2' ADP . . . C 3 -5.232 -30.114 2.554 1 52.75 ? O2' ADP 402 A 1 HETATM 17 C C1' ADP . . . C 3 -4.336 -28.941 4.45 1 40.69 ? C1' ADP 402 A 1 HETATM 18 N N9 ADP . . . C 3 -4.244 -28.996 5.907 1 41.88 ? N9 ADP 402 A 1 HETATM 19 C C8 ADP . . . C 3 -4.908 -28.175 6.778 1 38.75 ? C8 ADP 402 A 1 HETATM 20 N N7 ADP . . . C 3 -4.632 -28.399 8.037 1 41.98 ? N7 ADP 402 A 1 HETATM 21 C C5 ADP . . . C 3 -3.722 -29.443 7.997 1 41.1 ? C5 ADP 402 A 1 HETATM 22 C C6 ADP . . . C 3 -3.062 -30.178 9.009 1 43.17 ? C6 ADP 402 A 1 HETATM 23 N N6 ADP . . . C 3 -3.19 -29.947 10.316 1 40.23 ? N6 ADP 402 A 1 HETATM 24 N N1 ADP . . . C 3 -2.261 -31.195 8.629 1 48.92 ? N1 ADP 402 A 1 HETATM 25 C C2 ADP . . . C 3 -2.137 -31.468 7.328 1 47.75 ? C2 ADP 402 A 1 HETATM 26 N N3 ADP . . . C 3 -2.701 -30.848 6.291 1 46.21 ? N3 ADP 402 A 1 HETATM 27 C C4 ADP . . . C 3 -3.483 -29.833 6.69 1 41.96 ? C4 ADP 402 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #