data_8C1I # _model_server_result.job_id CHonpYPFiWy8GE8SJH_dcQ _model_server_result.datetime_utc '2024-10-10 01:21:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c1i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 8C1I # _exptl.entry_id 8C1I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 172.178 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1~{R},2~{R})-cyclohexane-1,2-dicarboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8C1I _cell.length_a 81.429 _cell.length_b 81.429 _cell.length_c 167.262 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C1I _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 151 A ASP 274 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc2 A OD1 ASP 151 A ASP 274 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc3 A OD2 ASP 151 A ASP 274 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc4 B O1B ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc5 B O1A ADP . A ADP 401 1_555 C MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc6 B O3B ADP . A ADP 401 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc7 C MG MG . A MG 402 1_555 O O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? metalc ? metalc8 C MG MG . A MG 402 1_555 O O HOH . A HOH 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc9 D MG MG . A MG 403 1_555 F O2 T5L . A T5L 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? metalc ? metalc10 D MG MG . A MG 403 1_555 O O HOH . A HOH 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.235 ? # _chem_comp.formula 'C8 H12 O4' _chem_comp.formula_weight 172.178 _chem_comp.id T5L _chem_comp.mon_nstd_flag . _chem_comp.name '(1~{R},2~{R})-cyclohexane-1,2-dicarboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C3 T5L doub 410 n n C3 O2 T5L sing 411 n n C3 C2 T5L sing 412 n n O1 C T5L doub 413 n n C4 C2 T5L sing 414 n n C4 C5 T5L sing 415 n n C2 C1 T5L sing 416 n n C1 C T5L sing 417 n n C1 C7 T5L sing 418 n n C O T5L sing 419 n n C5 C6 T5L sing 420 n n C6 C7 T5L sing 421 n n C1 H1 T5L sing 422 n n C2 H2 T5L sing 423 n n O2 H3 T5L sing 424 n n C4 H4 T5L sing 425 n n C4 H5 T5L sing 426 n n C5 H6 T5L sing 427 n n C5 H7 T5L sing 428 n n C6 H8 T5L sing 429 n n C6 H9 T5L sing 430 n n C7 H10 T5L sing 431 n n C7 H11 T5L sing 432 n n O H12 T5L sing 433 n n # _atom_sites.entry_id 8C1I _atom_sites.fract_transf_matrix[1][1] 0.012281 _atom_sites.fract_transf_matrix[1][2] 0.00709 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01418 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005979 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 401 1 ADP ADP . C 3 MG A 1 402 1 MG MG . D 3 MG A 1 403 2 MG MG . E 4 T1L A 1 404 4000 T1L 601 . F 5 T5L A 1 405 1 T5L CHA . G 6 SO4 A 1 406 1 SO4 SO4 . H 6 SO4 A 1 407 2 SO4 SO4 . I 6 SO4 A 1 408 3 SO4 SO4 . J 6 SO4 A 1 409 5 SO4 SO4 . K 6 SO4 A 1 410 6 SO4 SO4 . L 7 DMS A 1 411 1 DMS DMS . M 7 DMS A 1 412 2 DMS DMS . N 8 ACT A 1 413 1 ACT ACT . O 9 HOH A 1 501 25 HOH HOH . O 9 HOH A 2 502 2 HOH HOH . O 9 HOH A 3 503 24 HOH HOH . O 9 HOH A 4 504 5 HOH HOH . O 9 HOH A 5 505 36 HOH HOH . O 9 HOH A 6 506 23 HOH HOH . O 9 HOH A 7 507 16 HOH HOH . O 9 HOH A 8 508 12 HOH HOH . O 9 HOH A 9 509 44 HOH HOH . O 9 HOH A 10 510 15 HOH HOH . O 9 HOH A 11 511 41 HOH HOH . O 9 HOH A 12 512 9 HOH HOH . O 9 HOH A 13 513 27 HOH HOH . O 9 HOH A 14 514 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 T5L . . . F 5 -12.46 -19.124 7.437 1 99.95 ? C1 T5L 405 A 1 HETATM 2 C C2 T5L . . . F 5 -13.708 -20 7.222 1 98.35 ? C2 T5L 405 A 1 HETATM 3 C C3 T5L . . . F 5 -13.501 -21.1 6.217 1 96.98 ? C3 T5L 405 A 1 HETATM 4 O O1 T5L . . . F 5 -10.486 -19.822 6.401 1 101.94 ? O1 T5L 405 A 1 HETATM 5 O O3 T5L . . . F 5 -13.583 -20.969 5.011 1 97.33 ? O3 T5L 405 A 1 HETATM 6 O O2 T5L . . . F 5 -13.244 -22.212 6.815 1 95.6 ? O2 T5L 405 A 1 HETATM 7 C C4 T5L . . . F 5 -14.939 -19.123 6.969 1 97.62 ? C4 T5L 405 A 1 HETATM 8 C C5 T5L . . . F 5 -15.171 -18.182 8.148 1 97.29 ? C5 T5L 405 A 1 HETATM 9 C C6 T5L . . . F 5 -13.921 -17.353 8.478 1 98.41 ? C6 T5L 405 A 1 HETATM 10 C C7 T5L . . . F 5 -12.678 -18.224 8.658 1 99.28 ? C7 T5L 405 A 1 HETATM 11 C C T5L . . . F 5 -11.176 -19.916 7.505 1 101.66 ? C T5L 405 A 1 HETATM 12 O O T5L . . . F 5 -10.805 -20.53 8.485 1 102.4 ? O T5L 405 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #