data_8C1J # _model_server_result.job_id d-iiH8DWKwEpVH18e0gxwg _model_server_result.datetime_utc '2024-11-18 02:46:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c1j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 8C1J # _exptl.entry_id 8C1J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 277.279 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[(~{E})-prop-1-enyl]oxolane-3,4-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8C1J _cell.length_a 66.178 _cell.length_b 114.964 _cell.length_c 133.181 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C1J _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E 1 1 A,B,C,D,E 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id NH2 _struct_conn.ptnr1_label_comp_id ARG _struct_conn.ptnr1_label_seq_id 7 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id ARG _struct_conn.ptnr1_auth_seq_id 24 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C24 _struct_conn.ptnr2_label_comp_id QVR _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id QVR _struct_conn.ptnr2_auth_seq_id 101 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.461 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C12 H15 N5 O3' _chem_comp.formula_weight 277.279 _chem_comp.id QVR _chem_comp.mon_nstd_flag . _chem_comp.name (2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[(~{E})-prop-1-enyl]oxolane-3,4-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N57 C55 QVR sing 277 n n C55 C50 QVR doub 278 n y C55 N54 QVR sing 279 n y N48 C50 QVR sing 280 n y N48 C49 QVR doub 281 n y C50 C51 QVR sing 282 n y N54 C53 QVR doub 283 n y C49 N47 QVR sing 284 n y C51 N47 QVR sing 285 n y C51 N52 QVR doub 286 n y C53 N52 QVR sing 287 n y N47 C38 QVR sing 288 n n C38 C39 QVR sing 289 n n C38 O37 QVR sing 290 n n C24 C28 QVR sing 291 n n C39 O41 QVR sing 292 n n C39 C40 QVR sing 293 n n C31 C28 QVR doub 294 e n C31 C36 QVR sing 295 n n O37 C36 QVR sing 296 n n C36 C40 QVR sing 297 n n C40 O42 QVR sing 298 n n C24 H1 QVR sing 299 n n C24 H30 QVR sing 300 n n C24 H29 QVR sing 301 n n C28 H28 QVR sing 302 n n C31 H31 QVR sing 303 n n C36 H61 QVR sing 304 n n C38 H62 QVR sing 305 n n C39 H44 QVR sing 306 n n C40 H43 QVR sing 307 n n C49 H58 QVR sing 308 n n C53 H56 QVR sing 309 n n N57 H59 QVR sing 310 n n N57 H60 QVR sing 311 n n O41 H46 QVR sing 312 n n O42 H45 QVR sing 313 n n # _atom_sites.entry_id 8C1J _atom_sites.fract_transf_matrix[1][1] 0.015111 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008698 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007509 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 QVR B 1 101 24 QVR URU . D 4 HOH A 1 501 36 HOH HOH . D 4 HOH A 2 502 24 HOH HOH . D 4 HOH A 3 503 135 HOH HOH . D 4 HOH A 4 504 19 HOH HOH . D 4 HOH A 5 505 42 HOH HOH . D 4 HOH A 6 506 20 HOH HOH . D 4 HOH A 7 507 73 HOH HOH . D 4 HOH A 8 508 124 HOH HOH . D 4 HOH A 9 509 63 HOH HOH . D 4 HOH A 10 510 6 HOH HOH . D 4 HOH A 11 511 7 HOH HOH . D 4 HOH A 12 512 25 HOH HOH . D 4 HOH A 13 513 32 HOH HOH . D 4 HOH A 14 514 88 HOH HOH . D 4 HOH A 15 515 1 HOH HOH . D 4 HOH A 16 516 17 HOH HOH . D 4 HOH A 17 517 39 HOH HOH . D 4 HOH A 18 518 102 HOH HOH . D 4 HOH A 19 519 46 HOH HOH . D 4 HOH A 20 520 81 HOH HOH . D 4 HOH A 21 521 107 HOH HOH . D 4 HOH A 22 522 105 HOH HOH . D 4 HOH A 23 523 55 HOH HOH . D 4 HOH A 24 524 82 HOH HOH . D 4 HOH A 25 525 26 HOH HOH . D 4 HOH A 26 526 5 HOH HOH . D 4 HOH A 27 527 4 HOH HOH . D 4 HOH A 28 528 134 HOH HOH . D 4 HOH A 29 529 11 HOH HOH . D 4 HOH A 30 530 15 HOH HOH . D 4 HOH A 31 531 113 HOH HOH . D 4 HOH A 32 532 69 HOH HOH . D 4 HOH A 33 533 137 HOH HOH . D 4 HOH A 34 534 53 HOH HOH . D 4 HOH A 35 535 40 HOH HOH . D 4 HOH A 36 536 80 HOH HOH . D 4 HOH A 37 537 99 HOH HOH . D 4 HOH A 38 538 41 HOH HOH . D 4 HOH A 39 539 109 HOH HOH . D 4 HOH A 40 540 13 HOH HOH . D 4 HOH A 41 541 27 HOH HOH . D 4 HOH A 42 542 8 HOH HOH . D 4 HOH A 43 543 2 HOH HOH . D 4 HOH A 44 544 87 HOH HOH . D 4 HOH A 45 545 35 HOH HOH . D 4 HOH A 46 546 21 HOH HOH . D 4 HOH A 47 547 3 HOH HOH . D 4 HOH A 48 548 123 HOH HOH . D 4 HOH A 49 549 30 HOH HOH . D 4 HOH A 50 550 28 HOH HOH . D 4 HOH A 51 551 9 HOH HOH . D 4 HOH A 52 552 45 HOH HOH . D 4 HOH A 53 553 75 HOH HOH . D 4 HOH A 54 554 118 HOH HOH . D 4 HOH A 55 555 86 HOH HOH . D 4 HOH A 56 556 44 HOH HOH . D 4 HOH A 57 557 128 HOH HOH . D 4 HOH A 58 558 29 HOH HOH . D 4 HOH A 59 559 106 HOH HOH . D 4 HOH A 60 560 90 HOH HOH . D 4 HOH A 61 561 57 HOH HOH . D 4 HOH A 62 562 71 HOH HOH . D 4 HOH A 63 563 47 HOH HOH . D 4 HOH A 64 564 64 HOH HOH . D 4 HOH A 65 565 85 HOH HOH . D 4 HOH A 66 566 108 HOH HOH . D 4 HOH A 67 567 79 HOH HOH . D 4 HOH A 68 568 92 HOH HOH . D 4 HOH A 69 569 62 HOH HOH . D 4 HOH A 70 570 65 HOH HOH . D 4 HOH A 71 571 51 HOH HOH . D 4 HOH A 72 572 49 HOH HOH . D 4 HOH A 73 573 125 HOH HOH . D 4 HOH A 74 574 56 HOH HOH . D 4 HOH A 75 575 34 HOH HOH . D 4 HOH A 76 576 122 HOH HOH . D 4 HOH A 77 577 48 HOH HOH . D 4 HOH A 78 578 31 HOH HOH . D 4 HOH A 79 579 16 HOH HOH . D 4 HOH A 80 580 50 HOH HOH . D 4 HOH A 81 581 10 HOH HOH . D 4 HOH A 82 582 70 HOH HOH . D 4 HOH A 83 583 115 HOH HOH . D 4 HOH A 84 584 130 HOH HOH . D 4 HOH A 85 585 43 HOH HOH . D 4 HOH A 86 586 116 HOH HOH . D 4 HOH A 87 587 95 HOH HOH . D 4 HOH A 88 588 22 HOH HOH . D 4 HOH A 89 589 101 HOH HOH . D 4 HOH A 90 590 96 HOH HOH . D 4 HOH A 91 591 78 HOH HOH . D 4 HOH A 92 592 76 HOH HOH . D 4 HOH A 93 593 52 HOH HOH . D 4 HOH A 94 594 33 HOH HOH . D 4 HOH A 95 595 14 HOH HOH . D 4 HOH A 96 596 121 HOH HOH . D 4 HOH A 97 597 18 HOH HOH . D 4 HOH A 98 598 67 HOH HOH . D 4 HOH A 99 599 66 HOH HOH . D 4 HOH A 100 600 119 HOH HOH . D 4 HOH A 101 601 120 HOH HOH . D 4 HOH A 102 602 68 HOH HOH . D 4 HOH A 103 603 132 HOH HOH . D 4 HOH A 104 604 61 HOH HOH . D 4 HOH A 105 605 12 HOH HOH . D 4 HOH A 106 606 131 HOH HOH . D 4 HOH A 107 607 110 HOH HOH . D 4 HOH A 108 608 37 HOH HOH . D 4 HOH A 109 609 84 HOH HOH . D 4 HOH A 110 610 129 HOH HOH . D 4 HOH A 111 611 104 HOH HOH . D 4 HOH A 112 612 103 HOH HOH . D 4 HOH A 113 613 97 HOH HOH . D 4 HOH A 114 614 111 HOH HOH . D 4 HOH A 115 615 133 HOH HOH . D 4 HOH A 116 616 59 HOH HOH . D 4 HOH A 117 617 136 HOH HOH . D 4 HOH A 118 618 89 HOH HOH . D 4 HOH A 119 619 117 HOH HOH . D 4 HOH A 120 620 126 HOH HOH . D 4 HOH A 121 621 60 HOH HOH . D 4 HOH A 122 622 83 HOH HOH . D 4 HOH A 123 623 54 HOH HOH . D 4 HOH A 124 624 58 HOH HOH . D 4 HOH A 125 625 38 HOH HOH . D 4 HOH A 126 626 91 HOH HOH . D 4 HOH A 127 627 74 HOH HOH . D 4 HOH A 128 628 94 HOH HOH . D 4 HOH A 129 629 93 HOH HOH . D 4 HOH A 130 630 138 HOH HOH . D 4 HOH A 131 631 139 HOH HOH . D 4 HOH A 132 632 100 HOH HOH . D 4 HOH A 133 633 77 HOH HOH . E 4 HOH B 1 201 112 HOH HOH . E 4 HOH B 2 202 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C24 QVR . . . C 3 -19.5 5.603 -17.058 1 53.67 ? C24 QVR 101 B 1 HETATM 2 C C28 QVR . . . C 3 -19.896 7.043 -17.176 1 53.96 ? C28 QVR 101 B 1 HETATM 3 C C31 QVR . . . C 3 -21.147 7.45 -17.106 1 55.52 ? C31 QVR 101 B 1 HETATM 4 C C36 QVR . . . C 3 -21.499 8.895 -17.196 1 47.83 ? C36 QVR 101 B 1 HETATM 5 C C38 QVR . . . C 3 -23.691 9.459 -17.832 1 46.17 ? C38 QVR 101 B 1 HETATM 6 C C39 QVR . . . C 3 -23.71 9.167 -16.339 1 49.29 ? C39 QVR 101 B 1 HETATM 7 C C40 QVR . . . C 3 -22.242 9.433 -15.974 1 51.71 ? C40 QVR 101 B 1 HETATM 8 C C49 QVR . . . C 3 -24.921 7.394 -18.66 1 46.91 ? C49 QVR 101 B 1 HETATM 9 C C50 QVR . . . C 3 -26.322 8.235 -20.017 1 44.42 ? C50 QVR 101 B 1 HETATM 10 C C51 QVR . . . C 3 -25.61 9.287 -19.485 1 45.86 ? C51 QVR 101 B 1 HETATM 11 C C53 QVR . . . C 3 -26.677 10.751 -20.752 1 45.06 ? C53 QVR 101 B 1 HETATM 12 C C55 QVR . . . C 3 -27.33 8.529 -20.951 1 44.93 ? C55 QVR 101 B 1 HETATM 13 N N47 QVR . . . C 3 -24.705 8.747 -18.595 1 47.46 ? N47 QVR 101 B 1 HETATM 14 N N48 QVR . . . C 3 -25.861 7.017 -19.489 1 50.42 ? N48 QVR 101 B 1 HETATM 15 N N52 QVR . . . C 3 -25.742 10.587 -19.812 1 49.66 ? N52 QVR 101 B 1 HETATM 16 N N54 QVR . . . C 3 -27.467 9.831 -21.319 1 45.12 ? N54 QVR 101 B 1 HETATM 17 N N57 QVR . . . C 3 -28.221 7.625 -21.418 1 41.24 ? N57 QVR 101 B 1 HETATM 18 O O37 QVR . . . C 3 -22.42 9.041 -18.291 1 47.77 ? O37 QVR 101 B 1 HETATM 19 O O41 QVR . . . C 3 -24.601 10.013 -15.611 1 49.04 ? O41 QVR 101 B 1 HETATM 20 O O42 QVR . . . C 3 -21.926 10.804 -15.747 1 53.17 ? O42 QVR 101 B 1 HETATM 21 H H1 QVR . . . C 3 -19.981 5.097 -17.893 1 64.73 ? H1 QVR 101 B 1 HETATM 22 H H29 QVR . . . C 3 -19.984 5.239 -16.153 1 64.73 ? H29 QVR 101 B 1 HETATM 23 H H28 QVR . . . C 3 -19.085 7.754 -17.326 1 65.08 ? H28 QVR 101 B 1 HETATM 24 H H31 QVR . . . C 3 -21.976 6.757 -16.98 1 66.95 ? H31 QVR 101 B 1 HETATM 25 H H61 QVR . . . C 3 -20.62 9.498 -17.419 1 57.72 ? H61 QVR 101 B 1 HETATM 26 H H62 QVR . . . C 3 -23.794 10.519 -18.06 1 55.72 ? H62 QVR 101 B 1 HETATM 27 H H44 QVR . . . C 3 -23.974 8.127 -16.153 1 59.47 ? H44 QVR 101 B 1 HETATM 28 H H43 QVR . . . C 3 -21.974 8.972 -15.025 1 62.38 ? H43 QVR 101 B 1 HETATM 29 H H58 QVR . . . C 3 -24.339 6.699 -18.055 1 56.61 ? H58 QVR 101 B 1 HETATM 30 H H56 QVR . . . C 3 -26.824 11.769 -21.111 1 54.39 ? H56 QVR 101 B 1 HETATM 31 H H59 QVR . . . C 3 -28.222 6.655 -21.121 1 49.82 ? H59 QVR 101 B 1 HETATM 32 H H60 QVR . . . C 3 -28.94 7.865 -22.093 1 49.82 ? H60 QVR 101 B 1 HETATM 33 H H46 QVR . . . C 3 -24.024 10.555 -15.011 1 59.17 ? H46 QVR 101 B 1 HETATM 34 H H45 QVR . . . C 3 -21.891 11.273 -16.622 1 64.12 ? H45 QVR 101 B 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 462 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 34 #