data_8C1K # _model_server_result.job_id nrOTP2nkO_U87ayrp2WW8A _model_server_result.datetime_utc '2024-10-10 03:28:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c1k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 8C1K # _exptl.entry_id 8C1K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 172.178 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1~{R},2~{R})-cyclohexane-1,2-dicarboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8C1K _cell.length_a 82.142 _cell.length_b 82.142 _cell.length_c 169.177 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C1K _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 151 A ASP 274 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc2 A OD1 ASP 151 A ASP 274 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc3 A OD2 ASP 151 A ASP 274 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc4 C O1B ADP . A ADP 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc5 C O1A ADP . A ADP 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc6 C O3B ADP . A ADP 402 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc7 D MG MG . A MG 403 1_555 P O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc8 D MG MG . A MG 403 1_555 P O HOH . A HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc9 E MG MG . A MG 404 1_555 F O2 T5L . A T5L 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc10 E MG MG . A MG 404 1_555 P O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? # _chem_comp.formula 'C8 H12 O4' _chem_comp.formula_weight 172.178 _chem_comp.id T5L _chem_comp.mon_nstd_flag . _chem_comp.name '(1~{R},2~{R})-cyclohexane-1,2-dicarboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O3 C3 T5L doub 410 n n C3 O2 T5L sing 411 n n C3 C2 T5L sing 412 n n O1 C T5L doub 413 n n C4 C2 T5L sing 414 n n C4 C5 T5L sing 415 n n C2 C1 T5L sing 416 n n C1 C T5L sing 417 n n C1 C7 T5L sing 418 n n C O T5L sing 419 n n C5 C6 T5L sing 420 n n C6 C7 T5L sing 421 n n C1 H1 T5L sing 422 n n C2 H2 T5L sing 423 n n O2 H3 T5L sing 424 n n C4 H4 T5L sing 425 n n C4 H5 T5L sing 426 n n C5 H6 T5L sing 427 n n C5 H7 T5L sing 428 n n C6 H8 T5L sing 429 n n C6 H9 T5L sing 430 n n C7 H10 T5L sing 431 n n C7 H11 T5L sing 432 n n O H12 T5L sing 433 n n # _atom_sites.entry_id 8C1K _atom_sites.fract_transf_matrix[1][1] 0.012174 _atom_sites.fract_transf_matrix[1][2] 0.007029 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014057 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005911 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 T4O A 1 401 4000 T4O 602 . C 3 ADP A 1 402 1 ADP ADP . D 4 MG A 1 403 1 MG MG . E 4 MG A 1 404 2 MG MG . F 5 T5L A 1 405 1 T5L CHA . G 6 SO4 A 1 406 1 SO4 SO4 . H 6 SO4 A 1 407 2 SO4 SO4 . I 6 SO4 A 1 408 3 SO4 SO4 . J 6 SO4 A 1 409 5 SO4 SO4 . K 6 SO4 A 1 410 6 SO4 SO4 . L 7 DMS A 1 411 1 DMS DMS . M 7 DMS A 1 412 2 DMS DMS . N 7 DMS A 1 413 3 DMS DMS . O 8 ACT A 1 414 1 ACT ACT . P 9 HOH A 1 501 56 HOH HOH . P 9 HOH A 2 502 4 HOH HOH . P 9 HOH A 3 503 81 HOH HOH . P 9 HOH A 4 504 33 HOH HOH . P 9 HOH A 5 505 35 HOH HOH . P 9 HOH A 6 506 75 HOH HOH . P 9 HOH A 7 507 78 HOH HOH . P 9 HOH A 8 508 2 HOH HOH . P 9 HOH A 9 509 77 HOH HOH . P 9 HOH A 10 510 79 HOH HOH . P 9 HOH A 11 511 8 HOH HOH . P 9 HOH A 12 512 7 HOH HOH . P 9 HOH A 13 513 76 HOH HOH . P 9 HOH A 14 514 11 HOH HOH . P 9 HOH A 15 515 36 HOH HOH . P 9 HOH A 16 516 28 HOH HOH . P 9 HOH A 17 517 25 HOH HOH . P 9 HOH A 18 518 64 HOH HOH . P 9 HOH A 19 519 34 HOH HOH . P 9 HOH A 20 520 68 HOH HOH . P 9 HOH A 21 521 74 HOH HOH . P 9 HOH A 22 522 1 HOH HOH . P 9 HOH A 23 523 10 HOH HOH . P 9 HOH A 24 524 52 HOH HOH . P 9 HOH A 25 525 24 HOH HOH . P 9 HOH A 26 526 80 HOH HOH . P 9 HOH A 27 527 70 HOH HOH . P 9 HOH A 28 528 38 HOH HOH . P 9 HOH A 29 529 23 HOH HOH . P 9 HOH A 30 530 65 HOH HOH . P 9 HOH A 31 531 49 HOH HOH . P 9 HOH A 32 532 13 HOH HOH . P 9 HOH A 33 533 82 HOH HOH . P 9 HOH A 34 534 17 HOH HOH . P 9 HOH A 35 535 14 HOH HOH . P 9 HOH A 36 536 55 HOH HOH . P 9 HOH A 37 537 58 HOH HOH . P 9 HOH A 38 538 27 HOH HOH . P 9 HOH A 39 539 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 T5L . . . F 5 -12.376 -19.221 7.356 1 79.02 ? C1 T5L 405 A 1 HETATM 2 C C2 T5L . . . F 5 -13.63 -20.087 7.155 1 80.66 ? C2 T5L 405 A 1 HETATM 3 C C3 T5L . . . F 5 -13.453 -21.158 6.113 1 81.73 ? C3 T5L 405 A 1 HETATM 4 O O1 T5L . . . F 5 -10.367 -19.927 6.375 1 77 ? O1 T5L 405 A 1 HETATM 5 O O3 T5L . . . F 5 -13.505 -20.971 4.907 1 82.88 ? O3 T5L 405 A 1 HETATM 6 O O2 T5L . . . F 5 -13.246 -22.316 6.675 1 82.78 ? O2 T5L 405 A 1 HETATM 7 C C4 T5L . . . F 5 -14.869 -19.209 6.943 1 81.07 ? C4 T5L 405 A 1 HETATM 8 C C5 T5L . . . F 5 -15.071 -18.261 8.123 1 81.12 ? C5 T5L 405 A 1 HETATM 9 C C6 T5L . . . F 5 -13.817 -17.431 8.411 1 81.1 ? C6 T5L 405 A 1 HETATM 10 C C7 T5L . . . F 5 -12.575 -18.308 8.573 1 79.57 ? C7 T5L 405 A 1 HETATM 11 C C T5L . . . F 5 -11.107 -20.035 7.442 1 79.15 ? C T5L 405 A 1 HETATM 12 O O T5L . . . F 5 -10.795 -20.689 8.413 1 81.15 ? O T5L 405 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 40 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 12 #