data_8C1K # _model_server_result.job_id vC0zV7GF0xTwihYqorfkZg _model_server_result.datetime_utc '2024-10-10 03:29:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c1k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":413}' # _entry.id 8C1K # _exptl.entry_id 8C1K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8C1K _cell.length_a 82.142 _cell.length_b 82.142 _cell.length_c 169.177 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C1K _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 L N N ? 7 M N N ? 7 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 151 A ASP 274 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc2 A OD1 ASP 151 A ASP 274 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc3 A OD2 ASP 151 A ASP 274 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.444 ? metalc ? metalc4 C O1B ADP . A ADP 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc5 C O1A ADP . A ADP 402 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc6 C O3B ADP . A ADP 402 1_555 E MG MG . A MG 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc7 D MG MG . A MG 403 1_555 P O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc8 D MG MG . A MG 403 1_555 P O HOH . A HOH 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc9 E MG MG . A MG 404 1_555 F O2 T5L . A T5L 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.947 ? metalc ? metalc10 E MG MG . A MG 404 1_555 P O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 133 n n S C1 DMS sing 134 n n S C2 DMS sing 135 n n C1 H11 DMS sing 136 n n C1 H12 DMS sing 137 n n C1 H13 DMS sing 138 n n C2 H21 DMS sing 139 n n C2 H22 DMS sing 140 n n C2 H23 DMS sing 141 n n # _atom_sites.entry_id 8C1K _atom_sites.fract_transf_matrix[1][1] 0.012174 _atom_sites.fract_transf_matrix[1][2] 0.007029 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014057 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005911 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 T4O A 1 401 4000 T4O 602 . C 3 ADP A 1 402 1 ADP ADP . D 4 MG A 1 403 1 MG MG . E 4 MG A 1 404 2 MG MG . F 5 T5L A 1 405 1 T5L CHA . G 6 SO4 A 1 406 1 SO4 SO4 . H 6 SO4 A 1 407 2 SO4 SO4 . I 6 SO4 A 1 408 3 SO4 SO4 . J 6 SO4 A 1 409 5 SO4 SO4 . K 6 SO4 A 1 410 6 SO4 SO4 . L 7 DMS A 1 411 1 DMS DMS . M 7 DMS A 1 412 2 DMS DMS . N 7 DMS A 1 413 3 DMS DMS . O 8 ACT A 1 414 1 ACT ACT . P 9 HOH A 1 501 56 HOH HOH . P 9 HOH A 2 502 4 HOH HOH . P 9 HOH A 3 503 81 HOH HOH . P 9 HOH A 4 504 33 HOH HOH . P 9 HOH A 5 505 35 HOH HOH . P 9 HOH A 6 506 75 HOH HOH . P 9 HOH A 7 507 78 HOH HOH . P 9 HOH A 8 508 2 HOH HOH . P 9 HOH A 9 509 77 HOH HOH . P 9 HOH A 10 510 79 HOH HOH . P 9 HOH A 11 511 8 HOH HOH . P 9 HOH A 12 512 7 HOH HOH . P 9 HOH A 13 513 76 HOH HOH . P 9 HOH A 14 514 11 HOH HOH . P 9 HOH A 15 515 36 HOH HOH . P 9 HOH A 16 516 28 HOH HOH . P 9 HOH A 17 517 25 HOH HOH . P 9 HOH A 18 518 64 HOH HOH . P 9 HOH A 19 519 34 HOH HOH . P 9 HOH A 20 520 68 HOH HOH . P 9 HOH A 21 521 74 HOH HOH . P 9 HOH A 22 522 1 HOH HOH . P 9 HOH A 23 523 10 HOH HOH . P 9 HOH A 24 524 52 HOH HOH . P 9 HOH A 25 525 24 HOH HOH . P 9 HOH A 26 526 80 HOH HOH . P 9 HOH A 27 527 70 HOH HOH . P 9 HOH A 28 528 38 HOH HOH . P 9 HOH A 29 529 23 HOH HOH . P 9 HOH A 30 530 65 HOH HOH . P 9 HOH A 31 531 49 HOH HOH . P 9 HOH A 32 532 13 HOH HOH . P 9 HOH A 33 533 82 HOH HOH . P 9 HOH A 34 534 17 HOH HOH . P 9 HOH A 35 535 14 HOH HOH . P 9 HOH A 36 536 55 HOH HOH . P 9 HOH A 37 537 58 HOH HOH . P 9 HOH A 38 538 27 HOH HOH . P 9 HOH A 39 539 12 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . N 7 -15.531 -36.072 -6.915 1 115.34 ? S DMS 413 A 1 HETATM 2 O O DMS . . . N 7 -16.024 -37.167 -6.065 1 114.76 ? O DMS 413 A 1 HETATM 3 C C1 DMS . . . N 7 -15.992 -36.482 -8.579 1 114.33 ? C1 DMS 413 A 1 HETATM 4 C C2 DMS . . . N 7 -16.631 -34.73 -6.564 1 114.92 ? C2 DMS 413 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #