data_8C1M # _model_server_result.job_id hxLJeSRNGs9c_vjXUxXgzQ _model_server_result.datetime_utc '2024-10-10 03:28:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c1m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 8C1M # _exptl.entry_id 8C1M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 298.214 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '3-oxidanyl-5-[4-(trifluoromethyloxy)phenyl]benzoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8C1M _cell.length_a 82.82 _cell.length_b 82.82 _cell.length_c 139 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C1M _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 169 A THR 287 1_555 A N TPO 170 A TPO 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C TPO 170 A TPO 288 1_555 A N LEU 171 A LEU 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? metalc ? metalc1 A OD2 ASP 156 A ASP 274 1_555 B MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc2 A OD1 ASP 156 A ASP 274 1_555 D MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.752 ? metalc ? metalc3 B MG MG . A MG 401 1_555 E O2B ADP . A ADP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? metalc ? metalc4 B MG MG . A MG 401 1_555 E O2A ADP . A ADP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc5 D MG MG . A MG 403 1_555 E O3B ADP . A ADP 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? # _chem_comp.formula 'C14 H9 F3 O4' _chem_comp.formula_weight 298.214 _chem_comp.id T4X _chem_comp.mon_nstd_flag . _chem_comp.name '3-oxidanyl-5-[4-(trifluoromethyloxy)phenyl]benzoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O03 C02 T4X doub 332 n n C02 O01 T4X sing 333 n n C02 C04 T4X sing 334 n n C05 C04 T4X doub 335 n y C05 C06 T4X sing 336 n y C04 C10 T4X sing 337 n y O07 C06 T4X sing 338 n n C06 C08 T4X doub 339 n y C10 C09 T4X doub 340 n y C08 C09 T4X sing 341 n y C09 C11 T4X sing 342 n n C11 C21 T4X doub 343 n y C11 C12 T4X sing 344 n y C21 C20 T4X sing 345 n y C12 C13 T4X doub 346 n y C20 C14 T4X doub 347 n y C13 C14 T4X sing 348 n y C14 O15 T4X sing 349 n n F17 C16 T4X sing 350 n n F19 C16 T4X sing 351 n n C16 O15 T4X sing 352 n n C16 F18 T4X sing 353 n n C10 H1 T4X sing 354 n n C13 H2 T4X sing 355 n n C20 H3 T4X sing 356 n n C21 H4 T4X sing 357 n n O01 H5 T4X sing 358 n n C05 H6 T4X sing 359 n n O07 H7 T4X sing 360 n n C08 H8 T4X sing 361 n n C12 H9 T4X sing 362 n n # _atom_sites.entry_id 8C1M _atom_sites.fract_transf_matrix[1][1] 0.012074 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012074 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007194 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 401 1 MG MG . C 3 T4X A 1 402 1 T4X LIG . D 2 MG A 1 403 1 MG MG . E 4 ADP A 1 404 1 ADP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 T4X . . . C 3 35.148 -0.705 -8.472 1 99.71 ? C10 T4X 402 A 1 HETATM 2 C C13 T4X . . . C 3 35.953 1.989 -4.469 1 100.11 ? C13 T4X 402 A 1 HETATM 3 C C20 T4X . . . C 3 37.001 -0.186 -4.6 1 100.2 ? C20 T4X 402 A 1 HETATM 4 C C21 T4X . . . C 3 36.266 -0.448 -5.757 1 99.98 ? C21 T4X 402 A 1 HETATM 5 O O01 T4X . . . C 3 36.282 -2.339 -10.469 1 100.03 -1 O01 T4X 402 A 1 HETATM 6 C C02 T4X . . . C 3 35.105 -2.006 -10.673 1 99.94 ? C02 T4X 402 A 1 HETATM 7 O O03 T4X . . . C 3 34.396 -2.373 -11.636 1 100.02 ? O03 T4X 402 A 1 HETATM 8 C C04 T4X . . . C 3 34.449 -1.072 -9.621 1 99.79 ? C04 T4X 402 A 1 HETATM 9 C C05 T4X . . . C 3 33.136 -0.618 -9.768 1 99.67 ? C05 T4X 402 A 1 HETATM 10 C C06 T4X . . . C 3 32.56 0.203 -8.792 1 99.48 ? C06 T4X 402 A 1 HETATM 11 O O07 T4X . . . C 3 31.27 0.654 -8.941 1 99.41 ? O07 T4X 402 A 1 HETATM 12 C C08 T4X . . . C 3 33.274 0.582 -7.653 1 99.46 ? C08 T4X 402 A 1 HETATM 13 C C09 T4X . . . C 3 34.592 0.133 -7.502 1 99.64 ? C09 T4X 402 A 1 HETATM 14 C C11 T4X . . . C 3 35.363 0.475 -6.297 1 99.83 ? C11 T4X 402 A 1 HETATM 15 C C12 T4X . . . C 3 35.226 1.69 -5.622 1 99.95 ? C12 T4X 402 A 1 HETATM 16 C C14 T4X . . . C 3 36.844 1.043 -3.954 1 100.34 ? C14 T4X 402 A 1 HETATM 17 O O15 T4X . . . C 3 37.574 1.314 -2.796 1 100.62 ? O15 T4X 402 A 1 HETATM 18 C C16 T4X . . . C 3 38.69 2.163 -2.927 1 101.07 ? C16 T4X 402 A 1 HETATM 19 F F17 T4X . . . C 3 39.44 1.773 -3.949 1 101.06 ? F17 T4X 402 A 1 HETATM 20 F F18 T4X . . . C 3 39.412 2.047 -1.83 1 101.23 ? F18 T4X 402 A 1 HETATM 21 F F19 T4X . . . C 3 38.341 3.415 -3.08 1 101.36 ? F19 T4X 402 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #