data_8C21
#
_model_server_result.job_id            aFU70CRsNfbJMEqkJEPIvQ 
_model_server_result.datetime_utc      '2024-10-24 04:25:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8c21 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":501}' 
#
_entry.id    8C21 
#
_exptl.entry_id    8C21 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              176.215 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            SEROTONIN 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 211 A CYS 135 1_555 A SG CYS 225 A CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf2 B SG CYS 211 B CYS 135 1_555 B SG CYS 225 B CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 C SG CYS 211 C CYS 135 1_555 C SG CYS 225 C CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 D SG CYS 211 D CYS 135 1_555 D SG CYS 225 D CYS 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
#
_chem_comp.formula           'C10 H12 N2 O' 
_chem_comp.formula_weight    176.215 
_chem_comp.id                SRO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              SEROTONIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-(2-AMINOETHYL)-1H-INDOL-5-OL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OH CZ3 SRO sing 288 n n 
OH HOH SRO sing 289 n n 
CZ3 CE3 SRO doub 290 n y 
CZ3 CH2 SRO sing 291 n y 
CH2 CZ2 SRO doub 292 n y 
CH2 HH2 SRO sing 293 n n 
CZ2 CE2 SRO sing 294 n y 
CZ2 HZ2 SRO sing 295 n n 
CE2 NE1 SRO sing 296 n y 
CE2 CD2 SRO doub 297 n y 
NE1 CD1 SRO sing 298 n y 
NE1 HNE1 SRO sing 299 n n 
CD1 CG SRO doub 300 n y 
CD1 HD1 SRO sing 301 n n 
CG CB SRO sing 302 n n 
CG CD2 SRO sing 303 n y 
CD2 CE3 SRO sing 304 n y 
CE3 HE3 SRO sing 305 n n 
CB CA SRO sing 306 n n 
CB HB1 SRO sing 307 n n 
CB HB2 SRO sing 308 n n 
CA NZ SRO sing 309 n n 
CA HA1 SRO sing 310 n n 
CA HA2 SRO sing 311 n n 
NZ HNZ1 SRO sing 312 n n 
NZ HNZ2 SRO sing 313 n n 
#
_atom_sites.entry_id                     8C21 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 SRO B 1 501 501 SRO SRO . 
F 2 SRO C 1 501 501 SRO SRO . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OH SRO . . . E 2 123.637 162.901 109.823 1 20 ? OH SRO 501 B 1 
HETATM 2 C CZ3 SRO . . . E 2 124.078 161.573 109.879 1 20 ? CZ3 SRO 501 B 1 
HETATM 3 C CH2 SRO . . . E 2 124.62 161.176 111.092 1 20 ? CH2 SRO 501 B 1 
HETATM 4 C CZ2 SRO . . . E 2 125.085 159.881 111.251 1 20 ? CZ2 SRO 501 B 1 
HETATM 5 C CE2 SRO . . . E 2 125.008 158.972 110.182 1 20 ? CE2 SRO 501 B 1 
HETATM 6 N NE1 SRO . . . E 2 125.386 157.655 110.064 1 20 ? NE1 SRO 501 B 1 
HETATM 7 C CD1 SRO . . . E 2 125.087 157.239 108.808 1 20 ? CD1 SRO 501 B 1 
HETATM 8 C CG SRO . . . E 2 124.522 158.3 108.139 1 20 ? CG SRO 501 B 1 
HETATM 9 C CD2 SRO . . . E 2 124.473 159.367 108.987 1 20 ? CD2 SRO 501 B 1 
HETATM 10 C CE3 SRO . . . E 2 124.001 160.68 108.824 1 20 ? CE3 SRO 501 B 1 
HETATM 11 C CB SRO . . . E 2 124.09 158.093 106.692 1 20 ? CB SRO 501 B 1 
HETATM 12 C CA SRO . . . E 2 122.787 157.298 106.677 1 20 ? CA SRO 501 B 1 
HETATM 13 N NZ SRO . . . E 2 122.303 157.191 105.315 1 20 ? NZ SRO 501 B 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           289 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           13 
#