data_8C39
#
_model_server_result.job_id            Yw-CYHWFwjcwzibgafUtTw 
_model_server_result.datetime_utc      '2024-12-28 22:37:48' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8c39 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":210}' 
#
_entry.id    8C39 
#
_exptl.entry_id    8C39 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.005 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NITRATE ION' 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8C39 
_cell.length_a            77.43 
_cell.length_b            77.43 
_cell.length_c            37.9 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8C39 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 AAA CYS 6 1_555 A SG CYS 127 AAA CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
disulf ? disulf2 A SG CYS 30 AAA CYS 30 1_555 A SG CYS 115 AAA CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? 
disulf ? disulf3 A SG CYS 64 AAA CYS 64 1_555 A SG CYS 80 AAA CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf4 A SG CYS 76 AAA CYS 76 1_555 A SG CYS 94 AAA CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc1 A OG1 THR 40 AAA THR 40 1_555 N NA NA . AAA NA 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? 
metalc ? metalc2 A O SER 60 AAA SER 60 1_555 B NA NA . AAA NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc3 A O CYS 64 AAA CYS 64 1_555 B NA NA . AAA NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? 
metalc ? metalc4 A OG SER 72 AAA SER 72 1_555 B NA NA . AAA NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc5 A O ARG 73 AAA ARG 73 1_555 B NA NA . AAA NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc6 A O LEU 84 AAA LEU 84 1_555 N NA NA . AAA NA 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.537 ? 
metalc ? metalc7 A OD2 ASP 119 AAA ASP 119 1_555 O RU T8K . AAA T8K 214 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? 
metalc ? metalc8 B NA NA . AAA NA 201 1_555 D O1 NO3 . AAA NO3 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? 
metalc ? metalc9 B NA NA . AAA NA 201 1_555 P O HOH . AAA HOH 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? 
metalc ? metalc10 N NA NA . AAA NA 213 1_555 P O HOH . AAA HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? 
#
_chem_comp.formula           'N O3 -1' 
_chem_comp.formula_weight    62.005 
_chem_comp.id                NO3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NITRATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N O1 NO3 doub 237 n n 
N O2 NO3 sing 238 n n 
N O3 NO3 sing 239 n n 
#
_atom_sites.entry_id                     8C39 
_atom_sites.fract_transf_matrix[1][1]    0.012915 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012915 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026385 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 NA AAA 1 201 131 NA NA . 
C 3 NO3 AAA 1 202 1 NO3 NO3 . 
D 3 NO3 AAA 1 203 2 NO3 NO3 . 
E 3 NO3 AAA 1 204 4 NO3 NO3 . 
F 3 NO3 AAA 1 205 5 NO3 NO3 . 
G 3 NO3 AAA 1 206 7 NO3 NO3 . 
H 3 NO3 AAA 1 207 9 NO3 NO3 . 
I 3 NO3 AAA 1 208 10 NO3 NO3 . 
J 3 NO3 AAA 1 209 11 NO3 NO3 . 
K 3 NO3 AAA 1 210 12 NO3 NO3 . 
L 3 NO3 AAA 1 211 13 NO3 NO3 . 
M 4 CL AAA 1 212 1 CL CL . 
N 2 NA AAA 1 213 1 NA NA . 
O 5 T8K AAA 1 214 1 T8K R8U . 
P 6 HOH AAA 1 301 113 HOH HOH . 
P 6 HOH AAA 2 302 32 HOH HOH . 
P 6 HOH AAA 3 303 99 HOH HOH . 
P 6 HOH AAA 4 304 9 HOH HOH . 
P 6 HOH AAA 5 305 102 HOH HOH . 
P 6 HOH AAA 6 306 28 HOH HOH . 
P 6 HOH AAA 7 307 33 HOH HOH . 
P 6 HOH AAA 8 308 127 HOH HOH . 
P 6 HOH AAA 9 309 67 HOH HOH . 
P 6 HOH AAA 10 310 50 HOH HOH . 
P 6 HOH AAA 11 311 54 HOH HOH . 
P 6 HOH AAA 12 312 145 HOH HOH . 
P 6 HOH AAA 13 313 179 HOH HOH . 
P 6 HOH AAA 14 314 91 HOH HOH . 
P 6 HOH AAA 15 315 95 HOH HOH . 
P 6 HOH AAA 16 316 159 HOH HOH . 
P 6 HOH AAA 17 317 48 HOH HOH . 
P 6 HOH AAA 18 318 65 HOH HOH . 
P 6 HOH AAA 19 319 59 HOH HOH . 
P 6 HOH AAA 20 320 144 HOH HOH . 
P 6 HOH AAA 21 321 203 HOH HOH . 
P 6 HOH AAA 22 322 147 HOH HOH . 
P 6 HOH AAA 23 323 211 HOH HOH . 
P 6 HOH AAA 24 324 19 HOH HOH . 
P 6 HOH AAA 25 325 90 HOH HOH . 
P 6 HOH AAA 26 326 17 HOH HOH . 
P 6 HOH AAA 27 327 6 HOH HOH . 
P 6 HOH AAA 28 328 103 HOH HOH . 
P 6 HOH AAA 29 329 78 HOH HOH . 
P 6 HOH AAA 30 330 64 HOH HOH . 
P 6 HOH AAA 31 331 210 HOH HOH . 
P 6 HOH AAA 32 332 22 HOH HOH . 
P 6 HOH AAA 33 333 156 HOH HOH . 
P 6 HOH AAA 34 334 116 HOH HOH . 
P 6 HOH AAA 35 335 27 HOH HOH . 
P 6 HOH AAA 36 336 97 HOH HOH . 
P 6 HOH AAA 37 337 92 HOH HOH . 
P 6 HOH AAA 38 338 81 HOH HOH . 
P 6 HOH AAA 39 339 124 HOH HOH . 
P 6 HOH AAA 40 340 40 HOH HOH . 
P 6 HOH AAA 41 341 85 HOH HOH . 
P 6 HOH AAA 42 342 120 HOH HOH . 
P 6 HOH AAA 43 343 5 HOH HOH . 
P 6 HOH AAA 44 344 1 HOH HOH . 
P 6 HOH AAA 45 345 36 HOH HOH . 
P 6 HOH AAA 46 346 73 HOH HOH . 
P 6 HOH AAA 47 347 187 HOH HOH . 
P 6 HOH AAA 48 348 55 HOH HOH . 
P 6 HOH AAA 49 349 117 HOH HOH . 
P 6 HOH AAA 50 350 52 HOH HOH . 
P 6 HOH AAA 51 351 82 HOH HOH . 
P 6 HOH AAA 52 352 135 HOH HOH . 
P 6 HOH AAA 53 353 3 HOH HOH . 
P 6 HOH AAA 54 354 20 HOH HOH . 
P 6 HOH AAA 55 355 169 HOH HOH . 
P 6 HOH AAA 56 356 62 HOH HOH . 
P 6 HOH AAA 57 357 80 HOH HOH . 
P 6 HOH AAA 58 358 168 HOH HOH . 
P 6 HOH AAA 59 359 14 HOH HOH . 
P 6 HOH AAA 60 360 26 HOH HOH . 
P 6 HOH AAA 61 361 7 HOH HOH . 
P 6 HOH AAA 62 362 63 HOH HOH . 
P 6 HOH AAA 63 363 141 HOH HOH . 
P 6 HOH AAA 64 364 31 HOH HOH . 
P 6 HOH AAA 65 365 75 HOH HOH . 
P 6 HOH AAA 66 366 44 HOH HOH . 
P 6 HOH AAA 67 367 24 HOH HOH . 
P 6 HOH AAA 68 368 51 HOH HOH . 
P 6 HOH AAA 69 369 180 HOH HOH . 
P 6 HOH AAA 70 370 71 HOH HOH . 
P 6 HOH AAA 71 371 125 HOH HOH . 
P 6 HOH AAA 72 372 29 HOH HOH . 
P 6 HOH AAA 73 373 41 HOH HOH . 
P 6 HOH AAA 74 374 107 HOH HOH . 
P 6 HOH AAA 75 375 172 HOH HOH . 
P 6 HOH AAA 76 376 215 HOH HOH . 
P 6 HOH AAA 77 377 34 HOH HOH . 
P 6 HOH AAA 78 378 181 HOH HOH . 
P 6 HOH AAA 79 379 150 HOH HOH . 
P 6 HOH AAA 80 380 118 HOH HOH . 
P 6 HOH AAA 81 381 45 HOH HOH . 
P 6 HOH AAA 82 382 16 HOH HOH . 
P 6 HOH AAA 83 383 2 HOH HOH . 
P 6 HOH AAA 84 384 39 HOH HOH . 
P 6 HOH AAA 85 385 115 HOH HOH . 
P 6 HOH AAA 86 386 30 HOH HOH . 
P 6 HOH AAA 87 387 136 HOH HOH . 
P 6 HOH AAA 88 388 46 HOH HOH . 
P 6 HOH AAA 89 389 18 HOH HOH . 
P 6 HOH AAA 90 390 66 HOH HOH . 
P 6 HOH AAA 91 391 10 HOH HOH . 
P 6 HOH AAA 92 392 149 HOH HOH . 
P 6 HOH AAA 93 393 88 HOH HOH . 
P 6 HOH AAA 94 394 61 HOH HOH . 
P 6 HOH AAA 95 395 15 HOH HOH . 
P 6 HOH AAA 96 396 79 HOH HOH . 
P 6 HOH AAA 97 397 68 HOH HOH . 
P 6 HOH AAA 98 398 42 HOH HOH . 
P 6 HOH AAA 99 399 25 HOH HOH . 
P 6 HOH AAA 100 400 189 HOH HOH . 
P 6 HOH AAA 101 401 184 HOH HOH . 
P 6 HOH AAA 102 402 53 HOH HOH . 
P 6 HOH AAA 103 403 171 HOH HOH . 
P 6 HOH AAA 104 404 121 HOH HOH . 
P 6 HOH AAA 105 405 157 HOH HOH . 
P 6 HOH AAA 106 406 219 HOH HOH . 
P 6 HOH AAA 107 407 86 HOH HOH . 
P 6 HOH AAA 108 408 119 HOH HOH . 
P 6 HOH AAA 109 409 83 HOH HOH . 
P 6 HOH AAA 110 410 170 HOH HOH . 
P 6 HOH AAA 111 411 202 HOH HOH . 
P 6 HOH AAA 112 412 148 HOH HOH . 
P 6 HOH AAA 113 413 70 HOH HOH . 
P 6 HOH AAA 114 414 11 HOH HOH . 
P 6 HOH AAA 115 415 201 HOH HOH . 
P 6 HOH AAA 116 416 112 HOH HOH . 
P 6 HOH AAA 117 417 100 HOH HOH . 
P 6 HOH AAA 118 418 175 HOH HOH . 
P 6 HOH AAA 119 419 138 HOH HOH . 
P 6 HOH AAA 120 420 114 HOH HOH . 
P 6 HOH AAA 121 421 77 HOH HOH . 
P 6 HOH AAA 122 422 188 HOH HOH . 
P 6 HOH AAA 123 423 58 HOH HOH . 
P 6 HOH AAA 124 424 193 HOH HOH . 
P 6 HOH AAA 125 425 60 HOH HOH . 
P 6 HOH AAA 126 426 183 HOH HOH . 
P 6 HOH AAA 127 427 140 HOH HOH . 
P 6 HOH AAA 128 428 173 HOH HOH . 
P 6 HOH AAA 129 429 76 HOH HOH . 
P 6 HOH AAA 130 430 89 HOH HOH . 
P 6 HOH AAA 131 431 129 HOH HOH . 
P 6 HOH AAA 132 432 74 HOH HOH . 
P 6 HOH AAA 133 433 128 HOH HOH . 
P 6 HOH AAA 134 434 198 HOH HOH . 
P 6 HOH AAA 135 435 178 HOH HOH . 
P 6 HOH AAA 136 436 126 HOH HOH . 
P 6 HOH AAA 137 437 186 HOH HOH . 
P 6 HOH AAA 138 438 212 HOH HOH . 
P 6 HOH AAA 139 439 94 HOH HOH . 
P 6 HOH AAA 140 440 8 HOH HOH . 
P 6 HOH AAA 141 441 218 HOH HOH . 
P 6 HOH AAA 142 442 209 HOH HOH . 
P 6 HOH AAA 143 443 84 HOH HOH . 
P 6 HOH AAA 144 444 13 HOH HOH . 
P 6 HOH AAA 145 445 166 HOH HOH . 
P 6 HOH AAA 146 446 104 HOH HOH . 
P 6 HOH AAA 147 447 43 HOH HOH . 
P 6 HOH AAA 148 448 216 HOH HOH . 
P 6 HOH AAA 149 449 217 HOH HOH . 
P 6 HOH AAA 150 450 191 HOH HOH . 
P 6 HOH AAA 151 451 49 HOH HOH . 
P 6 HOH AAA 152 452 142 HOH HOH . 
P 6 HOH AAA 153 453 158 HOH HOH . 
P 6 HOH AAA 154 454 93 HOH HOH . 
P 6 HOH AAA 155 455 154 HOH HOH . 
P 6 HOH AAA 156 456 190 HOH HOH . 
P 6 HOH AAA 157 457 176 HOH HOH . 
P 6 HOH AAA 158 458 192 HOH HOH . 
P 6 HOH AAA 159 459 106 HOH HOH . 
P 6 HOH AAA 160 460 87 HOH HOH . 
P 6 HOH AAA 161 461 123 HOH HOH . 
P 6 HOH AAA 162 462 47 HOH HOH . 
P 6 HOH AAA 163 463 221 HOH HOH . 
P 6 HOH AAA 164 464 37 HOH HOH . 
P 6 HOH AAA 165 465 143 HOH HOH . 
P 6 HOH AAA 166 466 204 HOH HOH . 
P 6 HOH AAA 167 467 132 HOH HOH . 
P 6 HOH AAA 168 468 155 HOH HOH . 
P 6 HOH AAA 169 469 164 HOH HOH . 
P 6 HOH AAA 170 470 72 HOH HOH . 
P 6 HOH AAA 171 471 139 HOH HOH . 
P 6 HOH AAA 172 472 146 HOH HOH . 
P 6 HOH AAA 173 473 162 HOH HOH . 
P 6 HOH AAA 174 474 105 HOH HOH . 
P 6 HOH AAA 175 475 165 HOH HOH . 
P 6 HOH AAA 176 476 200 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N NO3 . A . K 3 8.075 -28.187 10.344 0.5 18.13 0 N NO3 210 AAA 1 
HETATM 2 O O1 NO3 . A . K 3 8.864 -28.248 9.426 0.5 20.89 0 O1 NO3 210 AAA 1 
HETATM 3 O O2 NO3 . A . K 3 8.317 -27.471 11.3 0.5 21.15 0 O2 NO3 210 AAA 1 
HETATM 4 O O3 NO3 . A . K 3 7.046 -28.837 10.324 0.5 22.35 0 O3 NO3 210 AAA 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           4 
#