data_8C3D # _model_server_result.job_id BSdjHbw3ZfSsgckO9CIxug _model_server_result.datetime_utc '2024-11-21 11:44:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c3d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 8C3D # _exptl.entry_id 8C3D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 121.01 _cell.angle_gamma 90 _cell.entry_id 8C3D _cell.length_a 94.63 _cell.length_b 41.62 _cell.length_c 65.66 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C3D _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 A CYS 22 1_555 A SG CYS 63 A CYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 56 A CYS 56 1_555 A SG CYS 96 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? disulf ? disulf3 A SG CYS 155 A CYS 155 1_555 A SG CYS 204 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 A SG CYS 25 A CYS 25 1_555 B C EJM 3 LIG EJM 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.937 ? covale ? covale2 B C19 P6S 1 LIG P6S 1 1_555 B N LEU 2 LIG LEU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 B C LEU 2 LIG LEU 2 1_555 B N EJM 3 LIG EJM 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.3 ? metalc ? metalc1 A OE1 GLU 59 A GLU 59 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.668 ? metalc ? metalc2 A OE2 GLU 59 A GLU 59 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc3 A OE1 GLU 59 A GLU 59 1_555 C CA CA . A CA 301 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc4 A OE2 GLU 59 A GLU 59 1_555 C CA CA . A CA 301 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.633 ? metalc ? metalc5 A OD1 ASN 70 A ASN 70 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? metalc ? metalc6 A OD1 ASN 70 A ASN 70 1_555 C CA CA . A CA 301 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc7 A OE1 GLN 73 A GLN 73 1_555 C CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc8 A OE1 GLN 73 A GLN 73 1_555 C CA CA . A CA 301 2_656 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8C3D _atom_sites.fract_transf_matrix[1][1] 0.010567 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006352 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024027 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01777 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 301 454 CA CA . D 4 HOH A 1 401 220 HOH HOH . D 4 HOH A 2 402 381 HOH HOH . D 4 HOH A 3 403 436 HOH HOH . D 4 HOH A 4 404 415 HOH HOH . D 4 HOH A 5 405 221 HOH HOH . D 4 HOH A 6 406 426 HOH HOH . D 4 HOH A 7 407 293 HOH HOH . D 4 HOH A 8 408 418 HOH HOH . D 4 HOH A 9 409 313 HOH HOH . D 4 HOH A 10 410 329 HOH HOH . D 4 HOH A 11 411 447 HOH HOH . D 4 HOH A 12 412 289 HOH HOH . D 4 HOH A 13 413 299 HOH HOH . D 4 HOH A 14 414 232 HOH HOH . D 4 HOH A 15 415 410 HOH HOH . D 4 HOH A 16 416 263 HOH HOH . D 4 HOH A 17 417 333 HOH HOH . D 4 HOH A 18 418 346 HOH HOH . D 4 HOH A 19 419 249 HOH HOH . D 4 HOH A 20 420 380 HOH HOH . D 4 HOH A 21 421 235 HOH HOH . D 4 HOH A 22 422 338 HOH HOH . D 4 HOH A 23 423 402 HOH HOH . D 4 HOH A 24 424 375 HOH HOH . D 4 HOH A 25 425 259 HOH HOH . D 4 HOH A 26 426 357 HOH HOH . D 4 HOH A 27 427 370 HOH HOH . D 4 HOH A 28 428 435 HOH HOH . D 4 HOH A 29 429 258 HOH HOH . D 4 HOH A 30 430 279 HOH HOH . D 4 HOH A 31 431 434 HOH HOH . D 4 HOH A 32 432 437 HOH HOH . D 4 HOH A 33 433 439 HOH HOH . D 4 HOH A 34 434 225 HOH HOH . D 4 HOH A 35 435 223 HOH HOH . D 4 HOH A 36 436 414 HOH HOH . D 4 HOH A 37 437 395 HOH HOH . D 4 HOH A 38 438 286 HOH HOH . D 4 HOH A 39 439 400 HOH HOH . D 4 HOH A 40 440 264 HOH HOH . D 4 HOH A 41 441 261 HOH HOH . D 4 HOH A 42 442 364 HOH HOH . D 4 HOH A 43 443 298 HOH HOH . D 4 HOH A 44 444 238 HOH HOH . D 4 HOH A 45 445 236 HOH HOH . D 4 HOH A 46 446 308 HOH HOH . D 4 HOH A 47 447 358 HOH HOH . D 4 HOH A 48 448 305 HOH HOH . D 4 HOH A 49 449 376 HOH HOH . D 4 HOH A 50 450 424 HOH HOH . D 4 HOH A 51 451 398 HOH HOH . D 4 HOH A 52 452 392 HOH HOH . D 4 HOH A 53 453 297 HOH HOH . D 4 HOH A 54 454 295 HOH HOH . D 4 HOH A 55 455 237 HOH HOH . D 4 HOH A 56 456 269 HOH HOH . D 4 HOH A 57 457 222 HOH HOH . D 4 HOH A 58 458 406 HOH HOH . D 4 HOH A 59 459 282 HOH HOH . D 4 HOH A 60 460 353 HOH HOH . D 4 HOH A 61 461 321 HOH HOH . D 4 HOH A 62 462 304 HOH HOH . D 4 HOH A 63 463 248 HOH HOH . D 4 HOH A 64 464 311 HOH HOH . D 4 HOH A 65 465 445 HOH HOH . D 4 HOH A 66 466 233 HOH HOH . D 4 HOH A 67 467 265 HOH HOH . D 4 HOH A 68 468 446 HOH HOH . D 4 HOH A 69 469 256 HOH HOH . D 4 HOH A 70 470 348 HOH HOH . D 4 HOH A 71 471 441 HOH HOH . D 4 HOH A 72 472 318 HOH HOH . D 4 HOH A 73 473 274 HOH HOH . D 4 HOH A 74 474 331 HOH HOH . D 4 HOH A 75 475 306 HOH HOH . D 4 HOH A 76 476 250 HOH HOH . D 4 HOH A 77 477 407 HOH HOH . D 4 HOH A 78 478 386 HOH HOH . D 4 HOH A 79 479 351 HOH HOH . D 4 HOH A 80 480 448 HOH HOH . D 4 HOH A 81 481 420 HOH HOH . D 4 HOH A 82 482 391 HOH HOH . D 4 HOH A 83 483 307 HOH HOH . D 4 HOH A 84 484 244 HOH HOH . D 4 HOH A 85 485 404 HOH HOH . D 4 HOH A 86 486 328 HOH HOH . D 4 HOH A 87 487 309 HOH HOH . D 4 HOH A 88 488 350 HOH HOH . D 4 HOH A 89 489 403 HOH HOH . D 4 HOH A 90 490 275 HOH HOH . D 4 HOH A 91 491 280 HOH HOH . D 4 HOH A 92 492 267 HOH HOH . D 4 HOH A 93 493 349 HOH HOH . D 4 HOH A 94 494 342 HOH HOH . D 4 HOH A 95 495 334 HOH HOH . D 4 HOH A 96 496 369 HOH HOH . D 4 HOH A 97 497 319 HOH HOH . D 4 HOH A 98 498 281 HOH HOH . D 4 HOH A 99 499 452 HOH HOH . D 4 HOH A 100 500 332 HOH HOH . D 4 HOH A 101 501 413 HOH HOH . D 4 HOH A 102 502 288 HOH HOH . D 4 HOH A 103 503 335 HOH HOH . D 4 HOH A 104 504 423 HOH HOH . D 4 HOH A 105 505 360 HOH HOH . D 4 HOH A 106 506 337 HOH HOH . D 4 HOH A 107 507 421 HOH HOH . D 4 HOH A 108 508 382 HOH HOH . D 4 HOH A 109 509 429 HOH HOH . D 4 HOH A 110 510 312 HOH HOH . D 4 HOH A 111 511 285 HOH HOH . D 4 HOH A 112 512 278 HOH HOH . D 4 HOH A 113 513 276 HOH HOH . D 4 HOH A 114 514 315 HOH HOH . D 4 HOH A 115 515 246 HOH HOH . D 4 HOH A 116 516 433 HOH HOH . D 4 HOH A 117 517 330 HOH HOH . D 4 HOH A 118 518 347 HOH HOH . D 4 HOH A 119 519 255 HOH HOH . D 4 HOH A 120 520 230 HOH HOH . D 4 HOH A 121 521 419 HOH HOH . D 4 HOH A 122 522 268 HOH HOH . D 4 HOH A 123 523 389 HOH HOH . D 4 HOH A 124 524 387 HOH HOH . D 4 HOH A 125 525 443 HOH HOH . D 4 HOH A 126 526 378 HOH HOH . D 4 HOH A 127 527 320 HOH HOH . D 4 HOH A 128 528 272 HOH HOH . D 4 HOH A 129 529 336 HOH HOH . D 4 HOH A 130 530 431 HOH HOH . D 4 HOH A 131 531 217 HOH HOH . D 4 HOH A 132 532 322 HOH HOH . D 4 HOH A 133 533 326 HOH HOH . D 4 HOH A 134 534 294 HOH HOH . D 4 HOH A 135 535 449 HOH HOH . D 4 HOH A 136 536 361 HOH HOH . D 4 HOH A 137 537 240 HOH HOH . D 4 HOH A 138 538 359 HOH HOH . D 4 HOH A 139 539 408 HOH HOH . D 4 HOH A 140 540 428 HOH HOH . D 4 HOH A 141 541 385 HOH HOH . D 4 HOH A 142 542 422 HOH HOH . D 4 HOH A 143 543 303 HOH HOH . D 4 HOH A 144 544 344 HOH HOH . D 4 HOH A 145 545 257 HOH HOH . D 4 HOH A 146 546 227 HOH HOH . D 4 HOH A 147 547 390 HOH HOH . D 4 HOH A 148 548 366 HOH HOH . D 4 HOH A 149 549 355 HOH HOH . D 4 HOH A 150 550 226 HOH HOH . D 4 HOH A 151 551 362 HOH HOH . D 4 HOH A 152 552 229 HOH HOH . D 4 HOH A 153 553 444 HOH HOH . D 4 HOH A 154 554 388 HOH HOH . D 4 HOH A 155 555 292 HOH HOH . D 4 HOH A 156 556 371 HOH HOH . D 4 HOH A 157 557 416 HOH HOH . D 4 HOH A 158 558 411 HOH HOH . D 4 HOH A 159 559 442 HOH HOH . D 4 HOH A 160 560 339 HOH HOH . D 4 HOH A 161 561 287 HOH HOH . D 4 HOH A 162 562 224 HOH HOH . D 4 HOH A 163 563 317 HOH HOH . D 4 HOH A 164 564 356 HOH HOH . D 4 HOH A 165 565 405 HOH HOH . D 4 HOH A 166 566 301 HOH HOH . D 4 HOH A 167 567 241 HOH HOH . D 4 HOH A 168 568 417 HOH HOH . D 4 HOH A 169 569 401 HOH HOH . D 4 HOH A 170 570 260 HOH HOH . D 4 HOH A 171 571 430 HOH HOH . D 4 HOH A 172 572 397 HOH HOH . D 4 HOH A 173 573 368 HOH HOH . D 4 HOH A 174 574 383 HOH HOH . D 4 HOH A 175 575 239 HOH HOH . D 4 HOH A 176 576 243 HOH HOH . D 4 HOH A 177 577 377 HOH HOH . D 4 HOH A 178 578 352 HOH HOH . D 4 HOH A 179 579 266 HOH HOH . D 4 HOH A 180 580 384 HOH HOH . D 4 HOH A 181 581 254 HOH HOH . D 4 HOH A 182 582 393 HOH HOH . D 4 HOH A 183 583 450 HOH HOH . D 4 HOH A 184 584 242 HOH HOH . D 4 HOH A 185 585 314 HOH HOH . D 4 HOH A 186 586 372 HOH HOH . D 4 HOH A 187 587 245 HOH HOH . D 4 HOH A 188 588 341 HOH HOH . D 4 HOH A 189 589 277 HOH HOH . D 4 HOH A 190 590 425 HOH HOH . D 4 HOH A 191 591 399 HOH HOH . D 4 HOH A 192 592 412 HOH HOH . D 4 HOH A 193 593 291 HOH HOH . D 4 HOH A 194 594 438 HOH HOH . D 4 HOH A 195 595 273 HOH HOH . D 4 HOH A 196 596 367 HOH HOH . D 4 HOH A 197 597 262 HOH HOH . D 4 HOH A 198 598 323 HOH HOH . D 4 HOH A 199 599 284 HOH HOH . D 4 HOH A 200 600 379 HOH HOH . D 4 HOH A 201 601 296 HOH HOH . D 4 HOH A 202 602 325 HOH HOH . D 4 HOH A 203 603 290 HOH HOH . D 4 HOH A 204 604 251 HOH HOH . D 4 HOH A 205 605 324 HOH HOH . D 4 HOH A 206 606 345 HOH HOH . D 4 HOH A 207 607 451 HOH HOH . D 4 HOH A 208 608 427 HOH HOH . D 4 HOH A 209 609 247 HOH HOH . D 4 HOH A 210 610 374 HOH HOH . D 4 HOH A 211 611 300 HOH HOH . D 4 HOH A 212 612 373 HOH HOH . D 4 HOH A 213 613 327 HOH HOH . D 4 HOH A 214 614 396 HOH HOH . D 4 HOH A 215 615 270 HOH HOH . D 4 HOH A 216 616 409 HOH HOH . D 4 HOH A 217 617 218 HOH HOH . D 4 HOH A 218 618 363 HOH HOH . D 4 HOH A 219 619 234 HOH HOH . D 4 HOH A 220 620 252 HOH HOH . D 4 HOH A 221 621 253 HOH HOH . D 4 HOH A 222 622 440 HOH HOH . D 4 HOH A 223 623 302 HOH HOH . D 4 HOH A 224 624 394 HOH HOH . D 4 HOH A 225 625 453 HOH HOH . D 4 HOH A 226 626 231 HOH HOH . D 4 HOH A 227 627 310 HOH HOH . D 4 HOH A 228 628 283 HOH HOH . D 4 HOH A 229 629 354 HOH HOH . D 4 HOH A 230 630 432 HOH HOH . D 4 HOH A 231 631 271 HOH HOH . D 4 HOH A 232 632 219 HOH HOH . D 4 HOH A 233 633 228 HOH HOH . D 4 HOH A 234 634 343 HOH HOH . D 4 HOH A 235 635 340 HOH HOH . E 4 HOH LIG 1 101 365 HOH HOH . E 4 HOH LIG 2 102 316 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 30.363 _atom_site.Cartn_y 4.185 _atom_site.Cartn_z 28.09 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 26.87 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 289 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #