data_8C3F
#
_model_server_result.job_id            A0l-vlzHOil_ORjYtmCdqw 
_model_server_result.datetime_utc      '2024-11-13 09:17:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8c3f 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":310}' 
#
_entry.id    8C3F 
#
_exptl.entry_id    8C3F 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          11 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8C3F 
_cell.length_a            139.346 
_cell.length_b            139.346 
_cell.length_c            184.574 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8C3F 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    'P 31 2"' 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      11 
_struct_asym.id                             M 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 190 L HIS 190 1_555 X FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
metalc ? metalc2 A NE2 HIS 230 L HIS 230 1_555 X FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? 
metalc ? metalc3 P MG BCL . L BCL 313 1_555 OA O HOH . L HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? 
metalc ? metalc4 B O VAL 192 M VAL 192 1_555 AA K K . M K 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? 
metalc ? metalc5 B NE2 HIS 219 M HIS 219 1_555 X FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? 
metalc ? metalc6 B OE1 GLU 234 M GLU 234 1_555 X FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? 
metalc ? metalc7 B OE2 GLU 234 M GLU 234 1_555 X FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc8 B NE2 HIS 266 M HIS 266 1_555 X FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? 
metalc ? metalc9 B O ASP 292 M ASP 292 1_555 AA K K . M K 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? 
metalc ? metalc10 C O MET 126 H MET 134 1_555 NA K K . H K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? 
metalc ? metalc11 C O ALA 129 H ALA 137 1_555 NA K K . H K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? 
metalc ? metalc12 C O PHE 132 H PHE 140 1_555 NA K K . H K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.983 ? 
metalc ? metalc13 NA K K . H K 305 1_555 QA O HOH . H HOH 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 699 n n 
C1 C2 GOL sing 700 n n 
C1 H11 GOL sing 701 n n 
C1 H12 GOL sing 702 n n 
O1 HO1 GOL sing 703 n n 
C2 O2 GOL sing 704 n n 
C2 C3 GOL sing 705 n n 
C2 H2 GOL sing 706 n n 
O2 HO2 GOL sing 707 n n 
C3 O3 GOL sing 708 n n 
C3 H31 GOL sing 709 n n 
C3 H32 GOL sing 710 n n 
O3 HO3 GOL sing 711 n n 
#
_atom_sites.entry_id                     8C3F 
_atom_sites.fract_transf_matrix[1][1]    0.007176 
_atom_sites.fract_transf_matrix[1][2]    0.004143 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008287 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005418 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 EDO L 1 301 302 EDO EDO . 
E 4 EDO L 1 302 303 EDO EDO . 
F 5 DIO L 1 303 311 DIO DIO . 
G 6 HTO L 1 304 321 HTO HTO . 
H 7 BCL L 1 305 602 BCL BCL . 
I 8 BPB L 1 306 402 BPB BPH . 
J 9 U10 L 1 307 502 U10 U10 . 
K 10 PO4 L 1 308 703 PO4 PO4 . 
L 10 PO4 L 1 309 705 PO4 PO4 . 
M 11 GOL L 1 310 732 GOL GOL . 
N 12 LDA L 1 311 905 LDA LDA . 
O 12 LDA L 1 312 915 LDA LDA . 
P 7 BCL L 1 313 601 BCL BCL . 
Q 4 EDO M 1 401 301 EDO EDO . 
R 6 HTO M 1 402 322 HTO HTO . 
S 7 BCL M 1 403 604 BCL BCL . 
T 12 LDA M 1 404 902 LDA LDA . 
U 4 EDO M 1 405 311 EDO EDO . 
V 7 BCL M 1 406 603 BCL BCL . 
W 8 BPB M 1 407 401 BPB BPH . 
X 13 FE M 1 408 500 FE FE . 
Y 9 U10 M 1 409 501 U10 U10 . 
Z 14 SPN M 1 410 600 SPN SPN . 
AA 15 K M 1 411 701 K K . 
BA 16 CL M 1 412 702 CL CL . 
CA 10 PO4 M 1 413 704 PO4 PO4 . 
DA 17 CDL M 1 414 800 CDL CDL . 
EA 12 LDA M 1 415 903 LDA LDA . 
FA 12 LDA M 1 416 907 LDA LDA . 
GA 12 LDA M 1 417 911 LDA LDA . 
HA 12 LDA M 1 418 918 LDA LDA . 
IA 4 EDO M 1 419 401 EDO EDO . 
JA 4 EDO H 1 301 402 EDO EDO . 
KA 4 EDO H 1 302 403 EDO EDO . 
LA 18 TRS H 1 303 501 TRS TRS . 
MA 12 LDA H 1 304 702 LDA LDA . 
NA 15 K H 1 305 1 K K . 
OA 19 HOH L 1 401 95 HOH HOH . 
OA 19 HOH L 2 402 10 HOH HOH . 
OA 19 HOH L 3 403 94 HOH HOH . 
OA 19 HOH L 4 404 47 HOH HOH . 
OA 19 HOH L 5 405 22 HOH HOH . 
OA 19 HOH L 6 406 65 HOH HOH . 
OA 19 HOH L 7 407 62 HOH HOH . 
OA 19 HOH L 8 408 103 HOH HOH . 
OA 19 HOH L 9 409 5 HOH HOH . 
OA 19 HOH L 10 410 2 HOH HOH . 
OA 19 HOH L 11 411 42 HOH HOH . 
OA 19 HOH L 12 412 7 HOH HOH . 
OA 19 HOH L 13 413 8 HOH HOH . 
OA 19 HOH L 14 414 55 HOH HOH . 
OA 19 HOH L 15 415 20 HOH HOH . 
OA 19 HOH L 16 416 74 HOH HOH . 
OA 19 HOH L 17 417 48 HOH HOH . 
OA 19 HOH L 18 418 75 HOH HOH . 
OA 19 HOH L 19 419 46 HOH HOH . 
OA 19 HOH L 20 420 28 HOH HOH . 
OA 19 HOH L 21 421 86 HOH HOH . 
OA 19 HOH L 22 422 36 HOH HOH . 
OA 19 HOH L 23 423 84 HOH HOH . 
OA 19 HOH L 24 424 17 HOH HOH . 
OA 19 HOH L 25 425 14 HOH HOH . 
OA 19 HOH L 26 426 12 HOH HOH . 
OA 19 HOH L 27 427 64 HOH HOH . 
OA 19 HOH L 28 428 9 HOH HOH . 
OA 19 HOH L 29 429 45 HOH HOH . 
OA 19 HOH L 30 430 98 HOH HOH . 
OA 19 HOH L 31 431 39 HOH HOH . 
OA 19 HOH L 32 432 92 HOH HOH . 
PA 19 HOH M 1 501 68 HOH HOH . 
PA 19 HOH M 2 502 111 HOH HOH . 
PA 19 HOH M 3 503 23 HOH HOH . 
PA 19 HOH M 4 504 43 HOH HOH . 
PA 19 HOH M 5 505 80 HOH HOH . 
PA 19 HOH M 6 506 37 HOH HOH . 
PA 19 HOH M 7 507 69 HOH HOH . 
PA 19 HOH M 8 508 34 HOH HOH . 
PA 19 HOH M 9 509 49 HOH HOH . 
PA 19 HOH M 10 510 26 HOH HOH . 
PA 19 HOH M 11 511 82 HOH HOH . 
PA 19 HOH M 12 512 87 HOH HOH . 
PA 19 HOH M 13 513 19 HOH HOH . 
PA 19 HOH M 14 514 70 HOH HOH . 
PA 19 HOH M 15 515 107 HOH HOH . 
PA 19 HOH M 16 516 59 HOH HOH . 
PA 19 HOH M 17 517 81 HOH HOH . 
PA 19 HOH M 18 518 100 HOH HOH . 
PA 19 HOH M 19 519 58 HOH HOH . 
PA 19 HOH M 20 520 66 HOH HOH . 
PA 19 HOH M 21 521 76 HOH HOH . 
PA 19 HOH M 22 522 16 HOH HOH . 
PA 19 HOH M 23 523 67 HOH HOH . 
PA 19 HOH M 24 524 77 HOH HOH . 
PA 19 HOH M 25 525 31 HOH HOH . 
PA 19 HOH M 26 526 109 HOH HOH . 
PA 19 HOH M 27 527 29 HOH HOH . 
PA 19 HOH M 28 528 1 HOH HOH . 
PA 19 HOH M 29 529 99 HOH HOH . 
PA 19 HOH M 30 530 4 HOH HOH . 
PA 19 HOH M 31 531 6 HOH HOH . 
PA 19 HOH M 32 532 104 HOH HOH . 
PA 19 HOH M 33 533 24 HOH HOH . 
PA 19 HOH M 34 534 106 HOH HOH . 
PA 19 HOH M 35 535 3 HOH HOH . 
PA 19 HOH M 36 536 110 HOH HOH . 
PA 19 HOH M 37 537 18 HOH HOH . 
PA 19 HOH M 38 538 91 HOH HOH . 
PA 19 HOH M 39 539 90 HOH HOH . 
QA 19 HOH H 1 401 78 HOH HOH . 
QA 19 HOH H 2 402 93 HOH HOH . 
QA 19 HOH H 3 403 11 HOH HOH . 
QA 19 HOH H 4 404 41 HOH HOH . 
QA 19 HOH H 5 405 32 HOH HOH . 
QA 19 HOH H 6 406 83 HOH HOH . 
QA 19 HOH H 7 407 52 HOH HOH . 
QA 19 HOH H 8 408 50 HOH HOH . 
QA 19 HOH H 9 409 63 HOH HOH . 
QA 19 HOH H 10 410 25 HOH HOH . 
QA 19 HOH H 11 411 73 HOH HOH . 
QA 19 HOH H 12 412 101 HOH HOH . 
QA 19 HOH H 13 413 13 HOH HOH . 
QA 19 HOH H 14 414 60 HOH HOH . 
QA 19 HOH H 15 415 61 HOH HOH . 
QA 19 HOH H 16 416 72 HOH HOH . 
QA 19 HOH H 17 417 97 HOH HOH . 
QA 19 HOH H 18 418 108 HOH HOH . 
QA 19 HOH H 19 419 30 HOH HOH . 
QA 19 HOH H 20 420 89 HOH HOH . 
QA 19 HOH H 21 421 54 HOH HOH . 
QA 19 HOH H 22 422 53 HOH HOH . 
QA 19 HOH H 23 423 44 HOH HOH . 
QA 19 HOH H 24 424 38 HOH HOH . 
QA 19 HOH H 25 425 27 HOH HOH . 
QA 19 HOH H 26 426 33 HOH HOH . 
QA 19 HOH H 27 427 96 HOH HOH . 
QA 19 HOH H 28 428 57 HOH HOH . 
QA 19 HOH H 29 429 15 HOH HOH . 
QA 19 HOH H 30 430 51 HOH HOH . 
QA 19 HOH H 31 431 35 HOH HOH . 
QA 19 HOH H 32 432 40 HOH HOH . 
QA 19 HOH H 33 433 56 HOH HOH . 
QA 19 HOH H 34 434 79 HOH HOH . 
QA 19 HOH H 35 435 21 HOH HOH . 
QA 19 HOH H 36 436 105 HOH HOH . 
QA 19 HOH H 37 437 88 HOH HOH . 
QA 19 HOH H 38 438 71 HOH HOH . 
QA 19 HOH H 39 439 102 HOH HOH . 
QA 19 HOH H 40 440 85 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . M 11 -69.937 16.039 -5.654 1 84.1 ? C1 GOL 310 L 1 
HETATM 2 O O1 GOL . . . M 11 -69.933 16.12 -7.053 1 90.25 ? O1 GOL 310 L 1 
HETATM 3 C C2 GOL . . . M 11 -69.209 14.728 -5.272 1 89.4 ? C2 GOL 310 L 1 
HETATM 4 O O2 GOL . . . M 11 -67.847 14.759 -5.573 1 89.65 ? O2 GOL 310 L 1 
HETATM 5 C C3 GOL . . . M 11 -69.495 14.517 -3.771 1 80.84 ? C3 GOL 310 L 1 
HETATM 6 O O3 GOL . . . M 11 -70.886 14.633 -3.628 1 84.49 ? O3 GOL 310 L 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           43 
_model_server_stats.create_model_time_ms    13 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#