data_8C3F # _model_server_result.job_id D450RHtaZ_c4oX0CvFgemA _model_server_result.datetime_utc '2024-11-24 10:42:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c3f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"HA","auth_seq_id":418}' # _entry.id 8C3F # _exptl.entry_id 8C3F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8C3F _cell.length_a 139.346 _cell.length_b 139.346 _cell.length_c 184.574 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C3F _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 12 N N N ? 12 O N N ? 12 T N N ? 12 EA N N ? 12 FA N N ? 12 GA N N ? 12 HA N N ? 12 MA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 190 L HIS 190 1_555 X FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc2 A NE2 HIS 230 L HIS 230 1_555 X FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc3 P MG BCL . L BCL 313 1_555 OA O HOH . L HOH 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? metalc ? metalc4 B O VAL 192 M VAL 192 1_555 AA K K . M K 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.733 ? metalc ? metalc5 B NE2 HIS 219 M HIS 219 1_555 X FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc6 B OE1 GLU 234 M GLU 234 1_555 X FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc7 B OE2 GLU 234 M GLU 234 1_555 X FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc8 B NE2 HIS 266 M HIS 266 1_555 X FE FE . M FE 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.196 ? metalc ? metalc9 B O ASP 292 M ASP 292 1_555 AA K K . M K 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? metalc ? metalc10 C O MET 126 H MET 134 1_555 NA K K . H K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? metalc ? metalc11 C O ALA 129 H ALA 137 1_555 NA K K . H K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.595 ? metalc ? metalc12 C O PHE 132 H PHE 140 1_555 NA K K . H K 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.983 ? metalc ? metalc13 NA K K . H K 305 1_555 QA O HOH . H HOH 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 781 n n N1 CM1 LDA sing 782 n n N1 CM2 LDA sing 783 n n N1 C1 LDA sing 784 n n CM1 HM11 LDA sing 785 n n CM1 HM12 LDA sing 786 n n CM1 HM13 LDA sing 787 n n CM2 HM21 LDA sing 788 n n CM2 HM22 LDA sing 789 n n CM2 HM23 LDA sing 790 n n C1 C2 LDA sing 791 n n C1 H11 LDA sing 792 n n C1 H12 LDA sing 793 n n C2 C3 LDA sing 794 n n C2 H21 LDA sing 795 n n C2 H22 LDA sing 796 n n C3 C4 LDA sing 797 n n C3 H31 LDA sing 798 n n C3 H32 LDA sing 799 n n C4 C5 LDA sing 800 n n C4 H41 LDA sing 801 n n C4 H42 LDA sing 802 n n C5 C6 LDA sing 803 n n C5 H51 LDA sing 804 n n C5 H52 LDA sing 805 n n C6 C7 LDA sing 806 n n C6 H61 LDA sing 807 n n C6 H62 LDA sing 808 n n C7 C8 LDA sing 809 n n C7 H71 LDA sing 810 n n C7 H72 LDA sing 811 n n C8 C9 LDA sing 812 n n C8 H81 LDA sing 813 n n C8 H82 LDA sing 814 n n C9 C10 LDA sing 815 n n C9 H91 LDA sing 816 n n C9 H92 LDA sing 817 n n C10 C11 LDA sing 818 n n C10 H101 LDA sing 819 n n C10 H102 LDA sing 820 n n C11 C12 LDA sing 821 n n C11 H111 LDA sing 822 n n C11 H112 LDA sing 823 n n C12 H121 LDA sing 824 n n C12 H122 LDA sing 825 n n C12 H123 LDA sing 826 n n # _atom_sites.entry_id 8C3F _atom_sites.fract_transf_matrix[1][1] 0.007176 _atom_sites.fract_transf_matrix[1][2] 0.004143 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008287 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005418 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 EDO L 1 301 302 EDO EDO . E 4 EDO L 1 302 303 EDO EDO . F 5 DIO L 1 303 311 DIO DIO . G 6 HTO L 1 304 321 HTO HTO . H 7 BCL L 1 305 602 BCL BCL . I 8 BPB L 1 306 402 BPB BPH . J 9 U10 L 1 307 502 U10 U10 . K 10 PO4 L 1 308 703 PO4 PO4 . L 10 PO4 L 1 309 705 PO4 PO4 . M 11 GOL L 1 310 732 GOL GOL . N 12 LDA L 1 311 905 LDA LDA . O 12 LDA L 1 312 915 LDA LDA . P 7 BCL L 1 313 601 BCL BCL . Q 4 EDO M 1 401 301 EDO EDO . R 6 HTO M 1 402 322 HTO HTO . S 7 BCL M 1 403 604 BCL BCL . T 12 LDA M 1 404 902 LDA LDA . U 4 EDO M 1 405 311 EDO EDO . V 7 BCL M 1 406 603 BCL BCL . W 8 BPB M 1 407 401 BPB BPH . X 13 FE M 1 408 500 FE FE . Y 9 U10 M 1 409 501 U10 U10 . Z 14 SPN M 1 410 600 SPN SPN . AA 15 K M 1 411 701 K K . BA 16 CL M 1 412 702 CL CL . CA 10 PO4 M 1 413 704 PO4 PO4 . DA 17 CDL M 1 414 800 CDL CDL . EA 12 LDA M 1 415 903 LDA LDA . FA 12 LDA M 1 416 907 LDA LDA . GA 12 LDA M 1 417 911 LDA LDA . HA 12 LDA M 1 418 918 LDA LDA . IA 4 EDO M 1 419 401 EDO EDO . JA 4 EDO H 1 301 402 EDO EDO . KA 4 EDO H 1 302 403 EDO EDO . LA 18 TRS H 1 303 501 TRS TRS . MA 12 LDA H 1 304 702 LDA LDA . NA 15 K H 1 305 1 K K . OA 19 HOH L 1 401 95 HOH HOH . OA 19 HOH L 2 402 10 HOH HOH . OA 19 HOH L 3 403 94 HOH HOH . OA 19 HOH L 4 404 47 HOH HOH . OA 19 HOH L 5 405 22 HOH HOH . OA 19 HOH L 6 406 65 HOH HOH . OA 19 HOH L 7 407 62 HOH HOH . OA 19 HOH L 8 408 103 HOH HOH . OA 19 HOH L 9 409 5 HOH HOH . OA 19 HOH L 10 410 2 HOH HOH . OA 19 HOH L 11 411 42 HOH HOH . OA 19 HOH L 12 412 7 HOH HOH . OA 19 HOH L 13 413 8 HOH HOH . OA 19 HOH L 14 414 55 HOH HOH . OA 19 HOH L 15 415 20 HOH HOH . OA 19 HOH L 16 416 74 HOH HOH . OA 19 HOH L 17 417 48 HOH HOH . OA 19 HOH L 18 418 75 HOH HOH . OA 19 HOH L 19 419 46 HOH HOH . OA 19 HOH L 20 420 28 HOH HOH . OA 19 HOH L 21 421 86 HOH HOH . OA 19 HOH L 22 422 36 HOH HOH . OA 19 HOH L 23 423 84 HOH HOH . OA 19 HOH L 24 424 17 HOH HOH . OA 19 HOH L 25 425 14 HOH HOH . OA 19 HOH L 26 426 12 HOH HOH . OA 19 HOH L 27 427 64 HOH HOH . OA 19 HOH L 28 428 9 HOH HOH . OA 19 HOH L 29 429 45 HOH HOH . OA 19 HOH L 30 430 98 HOH HOH . OA 19 HOH L 31 431 39 HOH HOH . OA 19 HOH L 32 432 92 HOH HOH . PA 19 HOH M 1 501 68 HOH HOH . PA 19 HOH M 2 502 111 HOH HOH . PA 19 HOH M 3 503 23 HOH HOH . PA 19 HOH M 4 504 43 HOH HOH . PA 19 HOH M 5 505 80 HOH HOH . PA 19 HOH M 6 506 37 HOH HOH . PA 19 HOH M 7 507 69 HOH HOH . PA 19 HOH M 8 508 34 HOH HOH . PA 19 HOH M 9 509 49 HOH HOH . PA 19 HOH M 10 510 26 HOH HOH . PA 19 HOH M 11 511 82 HOH HOH . PA 19 HOH M 12 512 87 HOH HOH . PA 19 HOH M 13 513 19 HOH HOH . PA 19 HOH M 14 514 70 HOH HOH . PA 19 HOH M 15 515 107 HOH HOH . PA 19 HOH M 16 516 59 HOH HOH . PA 19 HOH M 17 517 81 HOH HOH . PA 19 HOH M 18 518 100 HOH HOH . PA 19 HOH M 19 519 58 HOH HOH . PA 19 HOH M 20 520 66 HOH HOH . PA 19 HOH M 21 521 76 HOH HOH . PA 19 HOH M 22 522 16 HOH HOH . PA 19 HOH M 23 523 67 HOH HOH . PA 19 HOH M 24 524 77 HOH HOH . PA 19 HOH M 25 525 31 HOH HOH . PA 19 HOH M 26 526 109 HOH HOH . PA 19 HOH M 27 527 29 HOH HOH . PA 19 HOH M 28 528 1 HOH HOH . PA 19 HOH M 29 529 99 HOH HOH . PA 19 HOH M 30 530 4 HOH HOH . PA 19 HOH M 31 531 6 HOH HOH . PA 19 HOH M 32 532 104 HOH HOH . PA 19 HOH M 33 533 24 HOH HOH . PA 19 HOH M 34 534 106 HOH HOH . PA 19 HOH M 35 535 3 HOH HOH . PA 19 HOH M 36 536 110 HOH HOH . PA 19 HOH M 37 537 18 HOH HOH . PA 19 HOH M 38 538 91 HOH HOH . PA 19 HOH M 39 539 90 HOH HOH . QA 19 HOH H 1 401 78 HOH HOH . QA 19 HOH H 2 402 93 HOH HOH . QA 19 HOH H 3 403 11 HOH HOH . QA 19 HOH H 4 404 41 HOH HOH . QA 19 HOH H 5 405 32 HOH HOH . QA 19 HOH H 6 406 83 HOH HOH . QA 19 HOH H 7 407 52 HOH HOH . QA 19 HOH H 8 408 50 HOH HOH . QA 19 HOH H 9 409 63 HOH HOH . QA 19 HOH H 10 410 25 HOH HOH . QA 19 HOH H 11 411 73 HOH HOH . QA 19 HOH H 12 412 101 HOH HOH . QA 19 HOH H 13 413 13 HOH HOH . QA 19 HOH H 14 414 60 HOH HOH . QA 19 HOH H 15 415 61 HOH HOH . QA 19 HOH H 16 416 72 HOH HOH . QA 19 HOH H 17 417 97 HOH HOH . QA 19 HOH H 18 418 108 HOH HOH . QA 19 HOH H 19 419 30 HOH HOH . QA 19 HOH H 20 420 89 HOH HOH . QA 19 HOH H 21 421 54 HOH HOH . QA 19 HOH H 22 422 53 HOH HOH . QA 19 HOH H 23 423 44 HOH HOH . QA 19 HOH H 24 424 38 HOH HOH . QA 19 HOH H 25 425 27 HOH HOH . QA 19 HOH H 26 426 33 HOH HOH . QA 19 HOH H 27 427 96 HOH HOH . QA 19 HOH H 28 428 57 HOH HOH . QA 19 HOH H 29 429 15 HOH HOH . QA 19 HOH H 30 430 51 HOH HOH . QA 19 HOH H 31 431 35 HOH HOH . QA 19 HOH H 32 432 40 HOH HOH . QA 19 HOH H 33 433 56 HOH HOH . QA 19 HOH H 34 434 79 HOH HOH . QA 19 HOH H 35 435 21 HOH HOH . QA 19 HOH H 36 436 105 HOH HOH . QA 19 HOH H 37 437 88 HOH HOH . QA 19 HOH H 38 438 71 HOH HOH . QA 19 HOH H 39 439 102 HOH HOH . QA 19 HOH H 40 440 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . HA 12 -17.998 49.159 -9.528 1 122.01 ? N1 LDA 418 M 1 HETATM 2 O O1 LDA . . . HA 12 -18.334 50.25 -10.047 1 122.2 ? O1 LDA 418 M 1 HETATM 3 C CM1 LDA . . . HA 12 -17.335 48.308 -10.533 1 123.77 ? CM1 LDA 418 M 1 HETATM 4 C CM2 LDA . . . HA 12 -17.046 49.439 -8.438 1 111.7 ? CM2 LDA 418 M 1 HETATM 5 C C1 LDA . . . HA 12 -19.171 48.494 -8.966 1 115.76 ? C1 LDA 418 M 1 HETATM 6 C C2 LDA . . . HA 12 -19.936 47.775 -10.081 1 110.66 ? C2 LDA 418 M 1 HETATM 7 C C3 LDA . . . HA 12 -20.825 46.662 -9.522 1 101.62 ? C3 LDA 418 M 1 HETATM 8 C C4 LDA . . . HA 12 -22.307 46.947 -9.744 1 97.97 ? C4 LDA 418 M 1 HETATM 9 C C5 LDA . . . HA 12 -23.151 45.675 -9.669 1 96.75 ? C5 LDA 418 M 1 HETATM 10 C C6 LDA . . . HA 12 -23.351 45.19 -8.235 1 93.6 ? C6 LDA 418 M 1 HETATM 11 C C7 LDA . . . HA 12 -24.815 44.868 -7.94 1 83 ? C7 LDA 418 M 1 HETATM 12 C C8 LDA . . . HA 12 -24.922 43.488 -7.309 1 78.42 ? C8 LDA 418 M 1 HETATM 13 C C9 LDA . . . HA 12 -26.381 43.09 -7.107 1 81.14 ? C9 LDA 418 M 1 HETATM 14 C C10 LDA . . . HA 12 -26.47 41.662 -6.555 1 85.69 ? C10 LDA 418 M 1 HETATM 15 C C11 LDA . . . HA 12 -27.902 41.116 -6.527 1 83.45 ? C11 LDA 418 M 1 HETATM 16 C C12 LDA . . . HA 12 -28.967 42.199 -6.336 1 74.08 ? C12 LDA 418 M 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 468 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 16 #