data_8C3J # _model_server_result.job_id N9bsPqiwSf4ykA9DBdOvVg _model_server_result.datetime_utc '2025-08-01 04:28:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c3j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2101}' # _entry.id 8C3J # _exptl.entry_id 8C3J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 224.26 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[(4,6-diethyl-1,3,5-triazin-2-yl)-methyl-amino]ethanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8C3J _cell.length_a 112.56 _cell.length_b 112.56 _cell.length_c 140.785 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C3J _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C N LYS 1 C LYS 1226 1_555 C C LYS 36 C LYS 2064 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale2 C SG CYS 6 C CYS 1231 1_555 E C8 TKI . C TKI 2101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale3 C SG CYS 13 C CYS 1238 1_555 E C11 TKI . C TKI 2101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.79 ? covale ? covale4 D N LYS 1 J LYS 1226 1_555 D C LYS 36 J LYS 2064 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? # _chem_comp.formula 'C10 H16 N4 O2' _chem_comp.formula_weight 224.26 _chem_comp.id TKI _chem_comp.mon_nstd_flag . _chem_comp.name '2-[(4,6-diethyl-1,3,5-triazin-2-yl)-methyl-amino]ethanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2-(N-methyl-N-(4,6-divinyl-1,3,5-triazin-2-yl)amino)acetic acid (precursor)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 C7 TKI sing 304 n n C11 C10 TKI sing 305 n n C7 C5 TKI sing 306 n n N4 C5 TKI doub 307 n y N4 C3 TKI sing 308 n y C10 C3 TKI sing 309 n n C5 N6 TKI sing 310 n y C3 N2 TKI doub 311 n y N6 C1 TKI doub 312 n y N2 C1 TKI sing 313 n y C1 N13 TKI sing 314 n n N13 C15 TKI sing 315 n n N13 C14 TKI sing 316 n n C15 C16 TKI sing 317 n n O17 C16 TKI doub 318 n n C16 O18 TKI sing 319 n n O18 H1 TKI sing 320 n n C10 H2 TKI sing 321 n n C10 H3 TKI sing 322 n n C11 H4 TKI sing 323 n n C11 H5 TKI sing 324 n n C11 H6 TKI sing 325 n n C14 H7 TKI sing 326 n n C14 H8 TKI sing 327 n n C14 H9 TKI sing 328 n n C15 H10 TKI sing 329 n n C15 H11 TKI sing 330 n n C7 H12 TKI sing 331 n n C7 H13 TKI sing 332 n n C8 H14 TKI sing 333 n n C8 H15 TKI sing 334 n n C8 H16 TKI sing 335 n n # _atom_sites.entry_id 8C3J _atom_sites.fract_transf_matrix[1][1] 0.008884 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008884 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007103 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id E _pdbx_nonpoly_scheme.entity_id 3 _pdbx_nonpoly_scheme.mon_id TKI _pdbx_nonpoly_scheme.pdb_strand_id C _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 2101 _pdbx_nonpoly_scheme.auth_seq_num 2101 _pdbx_nonpoly_scheme.pdb_mon_id TKI _pdbx_nonpoly_scheme.auth_mon_id DVT _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O18 TKI . . . E 3 12.633 13.744 -4.558 1 150.48 ? O18 TKI 2101 C 1 HETATM 2 O O17 TKI . . . E 3 11.52 15.291 -5.731 1 149.05 -1 O17 TKI 2101 C 1 HETATM 3 C C1 TKI . . . E 3 13.783 15.957 -8.347 1 137.41 ? C1 TKI 2101 C 1 HETATM 4 C C10 TKI . . . E 3 15.422 18.577 -10.236 1 116.93 ? C10 TKI 2101 C 1 HETATM 5 C C11 TKI . . . E 3 15.875 18.273 -11.642 1 112.85 ? C11 TKI 2101 C 1 HETATM 6 C C14 TKI . . . E 3 15.392 15.215 -6.61 1 129.64 ? C14 TKI 2101 C 1 HETATM 7 C C15 TKI . . . E 3 13.208 14.059 -6.864 1 146.7 ? C15 TKI 2101 C 1 HETATM 8 C C16 TKI . . . E 3 12.394 14.386 -5.611 1 152.17 ? C16 TKI 2101 C 1 HETATM 9 C C3 TKI . . . E 3 14.371 17.626 -9.748 1 122.82 ? C3 TKI 2101 C 1 HETATM 10 C C5 TKI . . . E 3 12.376 16.633 -9.984 1 127.1 ? C5 TKI 2101 C 1 HETATM 11 C C7 TKI . . . E 3 11.154 16.39 -10.816 1 121.37 ? C7 TKI 2101 C 1 HETATM 12 C C8 TKI . . . E 3 11.478 15.822 -12.169 1 115 ? C8 TKI 2101 C 1 HETATM 13 N N13 TKI . . . E 3 14.108 15.117 -7.308 1 140.33 ? N13 TKI 2101 C 1 HETATM 14 N N2 TKI . . . E 3 14.716 16.868 -8.702 1 131.67 ? N2 TKI 2101 C 1 HETATM 15 N N4 TKI . . . E 3 13.215 17.579 -10.423 1 120.22 ? N4 TKI 2101 C 1 HETATM 16 N N6 TKI . . . E 3 12.578 15.806 -8.949 1 134.45 ? N6 TKI 2101 C 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 453 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 16 #