data_8C3N # _model_server_result.job_id 2wpK0kg-aXKETDQU3w7dSw _model_server_result.datetime_utc '2024-12-02 07:47:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c3n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":2301}' # _entry.id 8C3N # _exptl.entry_id 8C3N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 151.209 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 4,6-diethylpyrimidin-2-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8C3N _cell.length_a 143.017 _cell.length_b 37.961 _cell.length_c 43.934 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C3N _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall 'P 2 2ab' _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B SG CYS 20 B CYS 1234 1_555 E C7 RF6 . B RF6 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.757 ? covale ? covale2 B SG CYS 2 B CYS 2055 1_555 E C RF6 . B RF6 2301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.839 ? metalc ? metalc1 A OG1 THR 39 A THR 145 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc2 C O3B ADP . A ADP 401 1_555 D MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc3 D MG MG . A MG 402 1_555 F O HOH . A HOH 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc4 D MG MG . A MG 402 1_555 F O HOH . A HOH 545 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc5 D MG MG . A MG 402 1_555 F O HOH . A HOH 570 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? metalc ? metalc6 D MG MG . A MG 402 1_555 F O HOH . A HOH 597 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? # _chem_comp.formula 'C8 H13 N3' _chem_comp.formula_weight 151.209 _chem_comp.id RF6 _chem_comp.mon_nstd_flag . _chem_comp.name 4,6-diethylpyrimidin-2-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '4,6-bis(ethenyl)pyrimidin-2-amine (precursor);4,6-Divinylpyrimidin-2-amine (precursor);peptide staple' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C3 RF6 sing 321 n n N C3 RF6 doub 322 n y N C2 RF6 sing 323 n y C1 C2 RF6 sing 324 n n C1 C RF6 sing 325 n n C3 N1 RF6 sing 326 n y C2 C5 RF6 doub 327 n y N1 C4 RF6 doub 328 n y C7 C6 RF6 sing 329 n n C5 C4 RF6 sing 330 n y C4 C6 RF6 sing 331 n n C6 H1 RF6 sing 332 n n C7 H3 RF6 sing 333 n n C7 H4 RF6 sing 334 n n N2 H6 RF6 sing 335 n n N2 H7 RF6 sing 336 n n C H8 RF6 sing 337 n n C H9 RF6 sing 338 n n C1 H11 RF6 sing 339 n n C5 H13 RF6 sing 340 n n C6 H2 RF6 sing 341 n n C7 H5 RF6 sing 342 n n C H10 RF6 sing 343 n n C1 H12 RF6 sing 344 n n # _atom_sites.entry_id 8C3N _atom_sites.fract_transf_matrix[1][1] 0.006992 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026343 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022761 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ADP A 1 401 401 ADP ADP . D 4 MG A 1 402 1 MG MG . E 5 RF6 B 1 2301 2301 RF6 DVP . F 6 HOH A 1 501 192 HOH HOH . F 6 HOH A 2 502 17 HOH HOH . F 6 HOH A 3 503 197 HOH HOH . F 6 HOH A 4 504 53 HOH HOH . F 6 HOH A 5 505 91 HOH HOH . F 6 HOH A 6 506 10 HOH HOH . F 6 HOH A 7 507 176 HOH HOH . F 6 HOH A 8 508 133 HOH HOH . F 6 HOH A 9 509 110 HOH HOH . F 6 HOH A 10 510 174 HOH HOH . F 6 HOH A 11 511 164 HOH HOH . F 6 HOH A 12 512 56 HOH HOH . F 6 HOH A 13 513 182 HOH HOH . F 6 HOH A 14 514 34 HOH HOH . F 6 HOH A 15 515 114 HOH HOH . F 6 HOH A 16 516 66 HOH HOH . F 6 HOH A 17 517 7 HOH HOH . F 6 HOH A 18 518 18 HOH HOH . F 6 HOH A 19 519 32 HOH HOH . F 6 HOH A 20 520 12 HOH HOH . F 6 HOH A 21 521 31 HOH HOH . F 6 HOH A 22 522 116 HOH HOH . F 6 HOH A 23 523 129 HOH HOH . F 6 HOH A 24 524 122 HOH HOH . F 6 HOH A 25 525 38 HOH HOH . F 6 HOH A 26 526 189 HOH HOH . F 6 HOH A 27 527 3 HOH HOH . F 6 HOH A 28 528 68 HOH HOH . F 6 HOH A 29 529 86 HOH HOH . F 6 HOH A 30 530 4 HOH HOH . F 6 HOH A 31 531 74 HOH HOH . F 6 HOH A 32 532 44 HOH HOH . F 6 HOH A 33 533 117 HOH HOH . F 6 HOH A 34 534 188 HOH HOH . F 6 HOH A 35 535 180 HOH HOH . F 6 HOH A 36 536 181 HOH HOH . F 6 HOH A 37 537 125 HOH HOH . F 6 HOH A 38 538 168 HOH HOH . F 6 HOH A 39 539 141 HOH HOH . F 6 HOH A 40 540 6 HOH HOH . F 6 HOH A 41 541 142 HOH HOH . F 6 HOH A 42 542 190 HOH HOH . F 6 HOH A 43 543 82 HOH HOH . F 6 HOH A 44 544 64 HOH HOH . F 6 HOH A 45 545 121 HOH HOH . F 6 HOH A 46 546 187 HOH HOH . F 6 HOH A 47 547 89 HOH HOH . F 6 HOH A 48 548 13 HOH HOH . F 6 HOH A 49 549 2 HOH HOH . F 6 HOH A 50 550 35 HOH HOH . F 6 HOH A 51 551 5 HOH HOH . F 6 HOH A 52 552 19 HOH HOH . F 6 HOH A 53 553 213 HOH HOH . F 6 HOH A 54 554 69 HOH HOH . F 6 HOH A 55 555 29 HOH HOH . F 6 HOH A 56 556 138 HOH HOH . F 6 HOH A 57 557 212 HOH HOH . F 6 HOH A 58 558 196 HOH HOH . F 6 HOH A 59 559 46 HOH HOH . F 6 HOH A 60 560 47 HOH HOH . F 6 HOH A 61 561 223 HOH HOH . F 6 HOH A 62 562 1 HOH HOH . F 6 HOH A 63 563 25 HOH HOH . F 6 HOH A 64 564 28 HOH HOH . F 6 HOH A 65 565 85 HOH HOH . F 6 HOH A 66 566 159 HOH HOH . F 6 HOH A 67 567 112 HOH HOH . F 6 HOH A 68 568 162 HOH HOH . F 6 HOH A 69 569 100 HOH HOH . F 6 HOH A 70 570 123 HOH HOH . F 6 HOH A 71 571 177 HOH HOH . F 6 HOH A 72 572 131 HOH HOH . F 6 HOH A 73 573 222 HOH HOH . F 6 HOH A 74 574 63 HOH HOH . F 6 HOH A 75 575 55 HOH HOH . F 6 HOH A 76 576 108 HOH HOH . F 6 HOH A 77 577 73 HOH HOH . F 6 HOH A 78 578 200 HOH HOH . F 6 HOH A 79 579 111 HOH HOH . F 6 HOH A 80 580 148 HOH HOH . F 6 HOH A 81 581 23 HOH HOH . F 6 HOH A 82 582 113 HOH HOH . F 6 HOH A 83 583 65 HOH HOH . F 6 HOH A 84 584 81 HOH HOH . F 6 HOH A 85 585 51 HOH HOH . F 6 HOH A 86 586 43 HOH HOH . F 6 HOH A 87 587 48 HOH HOH . F 6 HOH A 88 588 84 HOH HOH . F 6 HOH A 89 589 57 HOH HOH . F 6 HOH A 90 590 146 HOH HOH . F 6 HOH A 91 591 185 HOH HOH . F 6 HOH A 92 592 115 HOH HOH . F 6 HOH A 93 593 88 HOH HOH . F 6 HOH A 94 594 20 HOH HOH . F 6 HOH A 95 595 132 HOH HOH . F 6 HOH A 96 596 127 HOH HOH . F 6 HOH A 97 597 124 HOH HOH . F 6 HOH A 98 598 9 HOH HOH . F 6 HOH A 99 599 78 HOH HOH . F 6 HOH A 100 600 119 HOH HOH . F 6 HOH A 101 601 136 HOH HOH . F 6 HOH A 102 602 75 HOH HOH . F 6 HOH A 103 603 83 HOH HOH . F 6 HOH A 104 604 130 HOH HOH . F 6 HOH A 105 605 134 HOH HOH . F 6 HOH A 106 606 16 HOH HOH . F 6 HOH A 107 607 153 HOH HOH . F 6 HOH A 108 608 102 HOH HOH . F 6 HOH A 109 609 45 HOH HOH . F 6 HOH A 110 610 71 HOH HOH . F 6 HOH A 111 611 118 HOH HOH . F 6 HOH A 112 612 95 HOH HOH . F 6 HOH A 113 613 58 HOH HOH . F 6 HOH A 114 614 36 HOH HOH . F 6 HOH A 115 615 160 HOH HOH . F 6 HOH A 116 616 150 HOH HOH . F 6 HOH A 117 617 42 HOH HOH . F 6 HOH A 118 618 194 HOH HOH . F 6 HOH A 119 619 135 HOH HOH . F 6 HOH A 120 620 62 HOH HOH . F 6 HOH A 121 621 33 HOH HOH . F 6 HOH A 122 622 22 HOH HOH . F 6 HOH A 123 623 40 HOH HOH . F 6 HOH A 124 624 155 HOH HOH . F 6 HOH A 125 625 193 HOH HOH . F 6 HOH A 126 626 166 HOH HOH . F 6 HOH A 127 627 60 HOH HOH . F 6 HOH A 128 628 169 HOH HOH . F 6 HOH A 129 629 186 HOH HOH . F 6 HOH A 130 630 14 HOH HOH . F 6 HOH A 131 631 59 HOH HOH . F 6 HOH A 132 632 77 HOH HOH . F 6 HOH A 133 633 99 HOH HOH . F 6 HOH A 134 634 15 HOH HOH . F 6 HOH A 135 635 149 HOH HOH . F 6 HOH A 136 636 215 HOH HOH . F 6 HOH A 137 637 96 HOH HOH . F 6 HOH A 138 638 94 HOH HOH . F 6 HOH A 139 639 163 HOH HOH . F 6 HOH A 140 640 97 HOH HOH . F 6 HOH A 141 641 219 HOH HOH . F 6 HOH A 142 642 26 HOH HOH . F 6 HOH A 143 643 101 HOH HOH . F 6 HOH A 144 644 41 HOH HOH . F 6 HOH A 145 645 183 HOH HOH . F 6 HOH A 146 646 61 HOH HOH . F 6 HOH A 147 647 210 HOH HOH . F 6 HOH A 148 648 178 HOH HOH . F 6 HOH A 149 649 103 HOH HOH . F 6 HOH A 150 650 173 HOH HOH . F 6 HOH A 151 651 170 HOH HOH . F 6 HOH A 152 652 198 HOH HOH . F 6 HOH A 153 653 105 HOH HOH . F 6 HOH A 154 654 171 HOH HOH . F 6 HOH A 155 655 175 HOH HOH . F 6 HOH A 156 656 27 HOH HOH . F 6 HOH A 157 657 217 HOH HOH . F 6 HOH A 158 658 90 HOH HOH . F 6 HOH A 159 659 191 HOH HOH . F 6 HOH A 160 660 216 HOH HOH . F 6 HOH A 161 661 109 HOH HOH . F 6 HOH A 162 662 184 HOH HOH . F 6 HOH A 163 663 172 HOH HOH . F 6 HOH A 164 664 37 HOH HOH . F 6 HOH A 165 665 167 HOH HOH . F 6 HOH A 166 666 179 HOH HOH . F 6 HOH A 167 667 107 HOH HOH . F 6 HOH A 168 668 143 HOH HOH . F 6 HOH A 169 669 76 HOH HOH . F 6 HOH A 170 670 201 HOH HOH . F 6 HOH A 171 671 199 HOH HOH . F 6 HOH A 172 672 218 HOH HOH . F 6 HOH A 173 673 195 HOH HOH . F 6 HOH A 174 674 67 HOH HOH . F 6 HOH A 175 675 211 HOH HOH . F 6 HOH A 176 676 52 HOH HOH . F 6 HOH A 177 677 128 HOH HOH . F 6 HOH A 178 678 54 HOH HOH . F 6 HOH A 179 679 145 HOH HOH . F 6 HOH A 180 680 98 HOH HOH . F 6 HOH A 181 681 120 HOH HOH . F 6 HOH A 182 682 106 HOH HOH . F 6 HOH A 183 683 220 HOH HOH . F 6 HOH A 184 684 104 HOH HOH . F 6 HOH A 185 685 80 HOH HOH . F 6 HOH A 186 686 87 HOH HOH . F 6 HOH A 187 687 221 HOH HOH . F 6 HOH A 188 688 156 HOH HOH . F 6 HOH A 189 689 151 HOH HOH . F 6 HOH A 190 690 137 HOH HOH . F 6 HOH A 191 691 147 HOH HOH . F 6 HOH A 192 692 144 HOH HOH . F 6 HOH A 193 693 157 HOH HOH . F 6 HOH A 194 694 49 HOH HOH . F 6 HOH A 195 695 165 HOH HOH . F 6 HOH A 196 696 70 HOH HOH . F 6 HOH A 197 697 24 HOH HOH . F 6 HOH A 198 698 161 HOH HOH . F 6 HOH A 199 699 154 HOH HOH . F 6 HOH A 200 700 139 HOH HOH . F 6 HOH A 201 701 152 HOH HOH . F 6 HOH A 202 702 158 HOH HOH . F 6 HOH A 203 703 140 HOH HOH . F 6 HOH A 204 704 126 HOH HOH . G 6 HOH B 1 2401 21 HOH HOH . G 6 HOH B 2 2402 79 HOH HOH . G 6 HOH B 3 2403 203 HOH HOH . G 6 HOH B 4 2404 205 HOH HOH . G 6 HOH B 5 2405 11 HOH HOH . G 6 HOH B 6 2406 8 HOH HOH . G 6 HOH B 7 2407 202 HOH HOH . G 6 HOH B 8 2408 39 HOH HOH . G 6 HOH B 9 2409 50 HOH HOH . G 6 HOH B 10 2410 72 HOH HOH . G 6 HOH B 11 2411 30 HOH HOH . G 6 HOH B 12 2412 204 HOH HOH . G 6 HOH B 13 2413 92 HOH HOH . G 6 HOH B 14 2414 208 HOH HOH . G 6 HOH B 15 2415 214 HOH HOH . G 6 HOH B 16 2416 207 HOH HOH . G 6 HOH B 17 2417 93 HOH HOH . G 6 HOH B 18 2418 206 HOH HOH . G 6 HOH B 19 2419 209 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C6 RF6 . . . E 5 29.347 -22.693 -25.91 1 36.8 ? C6 RF6 2301 B 1 HETATM 2 C C7 RF6 . . . E 5 29.821 -21.201 -26.272 1 31.2 ? C7 RF6 2301 B 1 HETATM 3 N N1 RF6 . . . E 5 30.681 -24.247 -24.643 1 43.74 ? N1 RF6 2301 B 1 HETATM 4 C C2 RF6 . . . E 5 32.424 -24.731 -26.702 1 47.13 ? C2 RF6 2301 B 1 HETATM 5 N N2 RF6 . . . E 5 32.045 -25.525 -23.298 1 50.09 ? N2 RF6 2301 B 1 HETATM 6 C C4 RF6 . . . E 5 30.472 -23.695 -25.846 1 38.51 ? C4 RF6 2301 B 1 HETATM 7 N N RF6 . . . E 5 32.667 -25.289 -25.504 1 50.11 ? N RF6 2301 B 1 HETATM 8 C C RF6 . . . E 5 34.872 -24.685 -27.413 1 59.81 ? C RF6 2301 B 1 HETATM 9 C C1 RF6 . . . E 5 33.436 -24.99 -27.795 1 48.46 ? C1 RF6 2301 B 1 HETATM 10 C C3 RF6 . . . E 5 31.784 -25.02 -24.514 1 47.59 ? C3 RF6 2301 B 1 HETATM 11 C C5 RF6 . . . E 5 31.317 -23.93 -26.915 1 41.4 ? C5 RF6 2301 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 11 #