data_8C3V # _model_server_result.job_id ph-gI-em4wIzZEx_Fvr8tA _model_server_result.datetime_utc '2024-11-21 11:21:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c3v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AA","auth_seq_id":203}' # _entry.id 8C3V # _exptl.entry_id 8C3V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 120.147 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-(2-METHOXYETHOXY)ETHANOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8C3V _cell.length_a 105.925 _cell.length_b 160.817 _cell.length_c 172.455 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C3V _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 ? tetrameric 4 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,M,P,Q,R,S,T,U 1 1 E,F,I,J,N,V,W,X,Y,Z,AA,GA 2 1 G,H,K,L,O,BA,CA,DA,EA,FA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 R N N ? 9 AA N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 5 oligosaccharide 6 oligosaccharide 7 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 5 4 3 MAN BMA C1 O1 . O3 HO3 . sing 4 ? 5 5 1 FUC NAG C1 O1 . O6 HO6 . sing 5 ? 6 2 1 NAG NAG C1 O1 . O4 HO4 . sing 6 ? 6 3 2 BMA NAG C1 O1 . O4 HO4 . sing 7 ? 6 4 1 FUC NAG C1 O1 . O6 HO6 . sing 8 ? 7 2 1 NAG NAG C1 O1 . O4 HO4 . sing 9 ? 7 3 2 BMA NAG C1 O1 . O4 HO4 . sing 10 ? 7 4 3 MAN BMA C1 O1 . O6 HO6 . sing 11 ? 7 5 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n M NAG 1 E 1 NAG R 602 NAG 5 n M NAG 2 E 2 NAG R 603 NAG 5 n M BMA 3 E 3 BMA R 604 BMA 5 n M MAN 4 E 4 MAN R 605 MAN 5 n M FUC 5 E 5 FUC R 601 FUC 6 n N NAG 1 F 1 NAG X 602 NAG 6 n N NAG 2 F 2 NAG X 603 NAG 6 n N BMA 3 F 3 BMA X 604 BMA 6 n N FUC 4 F 4 FUC X 601 FUC 7 n O NAG 1 G 1 NAG Y 602 NAG 7 n O NAG 2 G 2 NAG Y 603 NAG 7 n O BMA 3 G 3 BMA Y 604 BMA 7 n O MAN 4 G 4 MAN Y 605 MAN 7 n O FUC 5 G 5 FUC Y 601 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 H CYS 22 1_555 A SG CYS 98 H CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 153 H CYS 153 1_555 A SG CYS 209 H CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 B SG CYS 23 L CYS 23 1_555 B SG CYS 88 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 B SG CYS 133 L CYS 133 1_555 B SG CYS 193 L CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 C SG CYS 10 R CYS 336 1_555 C SG CYS 35 R CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf6 C SG CYS 53 R CYS 379 1_555 C SG CYS 106 R CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 C SG CYS 65 R CYS 391 1_555 C SG CYS 199 R CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 C SG CYS 154 R CYS 480 1_555 C SG CYS 162 R CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 D SG CYS 22 I CYS 22 1_555 D SG CYS 96 I CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf10 E SG CYS 10 X CYS 336 1_555 E SG CYS 35 X CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf11 E SG CYS 53 X CYS 379 1_555 E SG CYS 106 X CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf12 E SG CYS 65 X CYS 391 1_555 E SG CYS 199 X CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf13 E SG CYS 154 X CYS 480 1_555 E SG CYS 162 X CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf14 F SG CYS 22 J CYS 22 1_555 F SG CYS 96 J CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf15 G SG CYS 10 Y CYS 336 1_555 G SG CYS 35 Y CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf16 G SG CYS 53 Y CYS 379 1_555 G SG CYS 106 Y CYS 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf17 G SG CYS 65 Y CYS 391 1_555 G SG CYS 199 Y CYS 525 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? disulf ? disulf18 G SG CYS 154 Y CYS 480 1_555 G SG CYS 162 Y CYS 488 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf19 H SG CYS 22 K CYS 22 1_555 H SG CYS 96 K CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf20 I SG CYS 22 A CYS 22 1_555 I SG CYS 98 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf21 I SG CYS 153 A CYS 153 1_555 I SG CYS 209 A CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf22 J SG CYS 23 B CYS 23 1_555 J SG CYS 88 B CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf23 J SG CYS 133 B CYS 133 1_555 J SG CYS 193 B CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf24 K SG CYS 22 C CYS 22 1_555 K SG CYS 98 C CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf25 K SG CYS 153 C CYS 153 1_555 K SG CYS 209 C CYS 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf26 L SG CYS 23 D CYS 23 1_555 L SG CYS 88 D CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf27 L SG CYS 133 D CYS 133 1_555 L SG CYS 193 D CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? covale ? covale1 C ND2 ASN 17 R ASN 343 1_555 M C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale2 E ND2 ASN 17 X ASN 343 1_555 N C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.427 ? covale ? covale3 G ND2 ASN 17 Y ASN 343 1_555 O C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.428 ? covale ? covale4 M O4 NAG . E NAG 1 1_555 M C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.423 ? covale ? covale5 M O6 NAG . E NAG 1 1_555 M C1 FUC . E FUC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale6 M O4 NAG . E NAG 2 1_555 M C1 BMA . E BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale7 M O3 BMA . E BMA 3 1_555 M C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale8 N O4 NAG . F NAG 1 1_555 N C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale9 N O6 NAG . F NAG 1 1_555 N C1 FUC . F FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale10 N O4 NAG . F NAG 2 1_555 N C1 BMA . F BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale11 O O4 NAG . G NAG 1 1_555 O C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale12 O O6 NAG . G NAG 1 1_555 O C1 FUC . G FUC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale13 O O4 NAG . G NAG 2 1_555 O C1 BMA . G BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale14 O O6 BMA . G BMA 3 1_555 O C1 MAN . G MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C5 H12 O3' _chem_comp.formula_weight 120.147 _chem_comp.id PG0 _chem_comp.mon_nstd_flag . _chem_comp.name 2-(2-METHOXYETHOXY)ETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PEG 6000' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C5 O2 PG0 sing 349 n n C5 H51 PG0 sing 350 n n C5 H52 PG0 sing 351 n n C5 H53 PG0 sing 352 n n O2 C4 PG0 sing 353 n n C4 C3 PG0 sing 354 n n C4 H41 PG0 sing 355 n n C4 H42 PG0 sing 356 n n C3 O1 PG0 sing 357 n n C3 H31 PG0 sing 358 n n C3 H32 PG0 sing 359 n n O1 C2 PG0 sing 360 n n C2 C1 PG0 sing 361 n n C2 H21 PG0 sing 362 n n C2 H22 PG0 sing 363 n n C1 OTT PG0 sing 364 n n C1 H11 PG0 sing 365 n n C1 H12 PG0 sing 366 n n OTT HTT PG0 sing 367 n n # _atom_sites.entry_id 8C3V _atom_sites.fract_transf_matrix[1][1] 0.009441 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006218 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005799 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code P 8 GOL R 1 601 608 GOL GOL . Q 8 GOL R 1 602 609 GOL GOL . R 9 PG0 R 1 603 610 PG0 PG0 . S 8 GOL I 1 201 201 GOL GOL . T 8 GOL I 1 202 202 GOL GOL . U 8 GOL I 1 203 203 GOL GOL . V 8 GOL X 1 601 606 GOL GOL . W 8 GOL X 1 602 609 GOL GOL . X 10 PG4 X 1 603 610 PG4 PG4 . Y 8 GOL J 1 201 606 GOL GOL . Z 8 GOL J 1 202 607 GOL GOL . AA 9 PG0 J 1 203 201 PG0 PG0 . BA 8 GOL Y 1 601 615 GOL GOL . CA 8 GOL Y 1 602 617 GOL GOL . DA 10 PG4 Y 1 603 618 PG4 PG4 . EA 8 GOL K 1 201 201 GOL GOL . FA 8 GOL K 1 202 202 GOL GOL . GA 8 GOL A 1 301 301 GOL GOL . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C5 PG0 . . . AA 9 3.493 12.349 37.887 1 75.83 ? C5 PG0 203 J 1 HETATM 2 O O2 PG0 . . . AA 9 4.741 12.283 37.237 1 81.84 ? O2 PG0 203 J 1 HETATM 3 C C4 PG0 . . . AA 9 5.827 12.411 38.126 1 76.07 ? C4 PG0 203 J 1 HETATM 4 C C3 PG0 . . . AA 9 6.915 13.245 37.491 1 73.44 ? C3 PG0 203 J 1 HETATM 5 O O1 PG0 . . . AA 9 8.121 12.524 37.486 1 74.81 ? O1 PG0 203 J 1 HETATM 6 C C2 PG0 . . . AA 9 9.265 13.328 37.316 1 69.98 ? C2 PG0 203 J 1 HETATM 7 C C1 PG0 . . . AA 9 10.403 12.49 36.784 1 71.03 ? C1 PG0 203 J 1 HETATM 8 O OTT PG0 . . . AA 9 11.616 13.192 36.939 1 60 ? OTT PG0 203 J 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 8 #