data_8C3W # _model_server_result.job_id 45QeIeVYjIvvgb_KK5T9DQ _model_server_result.datetime_utc '2024-11-25 19:34:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c3w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8C3W # _exptl.entry_id 8C3W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8C3W _cell.length_a 51.752 _cell.length_b 65.159 _cell.length_c 70.204 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C3W _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 149 A HIS 148 1_555 C FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc2 B N1 IMD . A IMD 301 1_555 C FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 251 n y N1 C5 IMD sing 252 n y N1 HN1 IMD sing 253 n n C2 N3 IMD doub 254 n y C2 H2 IMD sing 255 n n N3 C4 IMD sing 256 n y N3 HN3 IMD sing 257 n n C4 C5 IMD doub 258 n y C4 H4 IMD sing 259 n n C5 H5 IMD sing 260 n n # _atom_sites.entry_id 8C3W _atom_sites.fract_transf_matrix[1][1] 0.019323 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015347 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IMD A 1 301 212 IMD IMD . C 3 HEM A 1 302 213 HEM HEM . D 4 MPD A 1 303 214 MPD MPD . E 5 PO4 A 1 304 215 PO4 PO4 . F 6 PEG A 1 305 216 PEG PEG . G 7 EDO A 1 306 217 EDO EDO . H 4 MPD A 1 307 218 MPD MPD . I 8 HOH A 1 401 80 HOH HOH . I 8 HOH A 2 402 82 HOH HOH . I 8 HOH A 3 403 31 HOH HOH . I 8 HOH A 4 404 18 HOH HOH . I 8 HOH A 5 405 24 HOH HOH . I 8 HOH A 6 406 71 HOH HOH . I 8 HOH A 7 407 75 HOH HOH . I 8 HOH A 8 408 40 HOH HOH . I 8 HOH A 9 409 33 HOH HOH . I 8 HOH A 10 410 85 HOH HOH . I 8 HOH A 11 411 37 HOH HOH . I 8 HOH A 12 412 12 HOH HOH . I 8 HOH A 13 413 55 HOH HOH . I 8 HOH A 14 414 51 HOH HOH . I 8 HOH A 15 415 7 HOH HOH . I 8 HOH A 16 416 49 HOH HOH . I 8 HOH A 17 417 76 HOH HOH . I 8 HOH A 18 418 52 HOH HOH . I 8 HOH A 19 419 81 HOH HOH . I 8 HOH A 20 420 21 HOH HOH . I 8 HOH A 21 421 48 HOH HOH . I 8 HOH A 22 422 59 HOH HOH . I 8 HOH A 23 423 10 HOH HOH . I 8 HOH A 24 424 25 HOH HOH . I 8 HOH A 25 425 23 HOH HOH . I 8 HOH A 26 426 28 HOH HOH . I 8 HOH A 27 427 61 HOH HOH . I 8 HOH A 28 428 6 HOH HOH . I 8 HOH A 29 429 5 HOH HOH . I 8 HOH A 30 430 22 HOH HOH . I 8 HOH A 31 431 64 HOH HOH . I 8 HOH A 32 432 62 HOH HOH . I 8 HOH A 33 433 35 HOH HOH . I 8 HOH A 34 434 1 HOH HOH . I 8 HOH A 35 435 96 HOH HOH . I 8 HOH A 36 436 14 HOH HOH . I 8 HOH A 37 437 102 HOH HOH . I 8 HOH A 38 438 122 HOH HOH . I 8 HOH A 39 439 2 HOH HOH . I 8 HOH A 40 440 9 HOH HOH . I 8 HOH A 41 441 54 HOH HOH . I 8 HOH A 42 442 108 HOH HOH . I 8 HOH A 43 443 53 HOH HOH . I 8 HOH A 44 444 41 HOH HOH . I 8 HOH A 45 445 99 HOH HOH . I 8 HOH A 46 446 45 HOH HOH . I 8 HOH A 47 447 8 HOH HOH . I 8 HOH A 48 448 50 HOH HOH . I 8 HOH A 49 449 34 HOH HOH . I 8 HOH A 50 450 63 HOH HOH . I 8 HOH A 51 451 87 HOH HOH . I 8 HOH A 52 452 4 HOH HOH . I 8 HOH A 53 453 36 HOH HOH . I 8 HOH A 54 454 101 HOH HOH . I 8 HOH A 55 455 15 HOH HOH . I 8 HOH A 56 456 3 HOH HOH . I 8 HOH A 57 457 16 HOH HOH . I 8 HOH A 58 458 94 HOH HOH . I 8 HOH A 59 459 89 HOH HOH . I 8 HOH A 60 460 38 HOH HOH . I 8 HOH A 61 461 19 HOH HOH . I 8 HOH A 62 462 100 HOH HOH . I 8 HOH A 63 463 39 HOH HOH . I 8 HOH A 64 464 11 HOH HOH . I 8 HOH A 65 465 92 HOH HOH . I 8 HOH A 66 466 29 HOH HOH . I 8 HOH A 67 467 88 HOH HOH . I 8 HOH A 68 468 47 HOH HOH . I 8 HOH A 69 469 123 HOH HOH . I 8 HOH A 70 470 17 HOH HOH . I 8 HOH A 71 471 13 HOH HOH . I 8 HOH A 72 472 27 HOH HOH . I 8 HOH A 73 473 69 HOH HOH . I 8 HOH A 74 474 20 HOH HOH . I 8 HOH A 75 475 105 HOH HOH . I 8 HOH A 76 476 46 HOH HOH . I 8 HOH A 77 477 30 HOH HOH . I 8 HOH A 78 478 26 HOH HOH . I 8 HOH A 79 479 114 HOH HOH . I 8 HOH A 80 480 90 HOH HOH . I 8 HOH A 81 481 72 HOH HOH . I 8 HOH A 82 482 79 HOH HOH . I 8 HOH A 83 483 116 HOH HOH . I 8 HOH A 84 484 44 HOH HOH . I 8 HOH A 85 485 60 HOH HOH . I 8 HOH A 86 486 56 HOH HOH . I 8 HOH A 87 487 104 HOH HOH . I 8 HOH A 88 488 103 HOH HOH . I 8 HOH A 89 489 73 HOH HOH . I 8 HOH A 90 490 112 HOH HOH . I 8 HOH A 91 491 110 HOH HOH . I 8 HOH A 92 492 78 HOH HOH . I 8 HOH A 93 493 127 HOH HOH . I 8 HOH A 94 494 117 HOH HOH . I 8 HOH A 95 495 106 HOH HOH . I 8 HOH A 96 496 118 HOH HOH . I 8 HOH A 97 497 115 HOH HOH . I 8 HOH A 98 498 65 HOH HOH . I 8 HOH A 99 499 43 HOH HOH . I 8 HOH A 100 500 97 HOH HOH . I 8 HOH A 101 501 70 HOH HOH . I 8 HOH A 102 502 109 HOH HOH . I 8 HOH A 103 503 74 HOH HOH . I 8 HOH A 104 504 67 HOH HOH . I 8 HOH A 105 505 68 HOH HOH . I 8 HOH A 106 506 58 HOH HOH . I 8 HOH A 107 507 66 HOH HOH . I 8 HOH A 108 508 95 HOH HOH . I 8 HOH A 109 509 121 HOH HOH . I 8 HOH A 110 510 113 HOH HOH . I 8 HOH A 111 511 77 HOH HOH . I 8 HOH A 112 512 42 HOH HOH . I 8 HOH A 113 513 98 HOH HOH . I 8 HOH A 114 514 130 HOH HOH . I 8 HOH A 115 515 131 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . B 2 4.488 10.515 -0.94 1 20.51 ? N1 IMD 301 A 1 HETATM 2 C C2 IMD . . . B 2 3.349 10.728 -1.631 1 22.93 ? C2 IMD 301 A 1 HETATM 3 N N3 IMD . . . B 2 3.36 10.016 -2.8 1 24.97 ? N3 IMD 301 A 1 HETATM 4 C C4 IMD . . . B 2 4.562 9.406 -2.882 1 21.51 ? C4 IMD 301 A 1 HETATM 5 C C5 IMD . . . B 2 5.259 9.714 -1.706 1 20.61 ? C5 IMD 301 A 1 HETATM 6 H H2 IMD . . . B 2 2.618 11.311 -1.338 1 27.53 ? H2 IMD 301 A 1 HETATM 7 H HN3 IMD . . . B 2 2.632 9.959 -3.453 1 29.98 ? HN3 IMD 301 A 1 HETATM 8 H H4 IMD . . . B 2 4.886 8.853 -3.624 1 25.83 ? H4 IMD 301 A 1 HETATM 9 H H5 IMD . . . B 2 6.158 9.4 -1.477 1 24.75 ? H5 IMD 301 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #