data_8C4E # _model_server_result.job_id tjzQzYZfPm3NyFssyVnkgg _model_server_result.datetime_utc '2024-10-25 20:30:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c4e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":402}' # _entry.id 8C4E # _exptl.entry_id 8C4E _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 94.971 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8C4E _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C4E _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 12-meric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 N N N ? 4 P N N ? 4 U N N ? 4 X N N ? 4 AA N N ? 4 DA N N ? 4 EA N N ? 4 IA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 74 A GLU 72 1_555 A N HIC 75 A HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C HIC 75 A HIC 73 1_555 A N GLY 76 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 B C GLU 74 B GLU 72 1_555 B N HIC 75 B HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 B C HIC 75 B HIC 73 1_555 B N GLY 76 B GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 C C GLU 74 C GLU 72 1_555 C N HIC 75 C HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 C C HIC 75 C HIC 73 1_555 C N GLY 76 C GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 D C GLU 74 D GLU 72 1_555 D N HIC 75 D HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 D C HIC 75 D HIC 73 1_555 D N GLY 76 D GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale9 E C GLU 74 E GLU 72 1_555 E N HIC 75 E HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale10 E C HIC 75 E HIC 73 1_555 E N GLY 76 E GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale11 F C GLU 74 F GLU 72 1_555 F N HIC 75 F HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale12 F C HIC 75 F HIC 73 1_555 F N GLY 76 F GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 G C GLU 74 G GLU 72 1_555 G N HIC 75 G HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale14 G C HIC 75 G HIC 73 1_555 G N GLY 76 G GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale15 H C GLU 74 H GLU 72 1_555 H N HIC 75 H HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale16 H C HIC 75 H HIC 73 1_555 H N GLY 76 H GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? metalc ? metalc1 M O2B ADP . A ADP 401 1_555 O MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.941 ? metalc ? metalc2 M O2A ADP . A ADP 401 1_555 O MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.691 ? metalc ? metalc3 N O2 PO4 . A PO4 402 1_555 O MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc4 P O2 PO4 . B PO4 401 1_555 R MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc5 Q O2B ADP . B ADP 402 1_555 R MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc6 S O2B ADP . C ADP 401 1_555 T MG MG . C MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc7 T MG MG . C MG 402 1_555 U O2 PO4 . C PO4 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc8 V MG MG . D MG 801 1_555 W O2B ADP . D ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc9 V MG MG . D MG 801 1_555 X O2 PO4 . D PO4 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? metalc ? metalc10 Y MG MG . E MG 801 1_555 Z O2B ADP . E ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.883 ? metalc ? metalc11 Y MG MG . E MG 801 1_555 AA O2 PO4 . E PO4 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc12 BA MG MG . F MG 801 1_555 CA O2B ADP . F ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.847 ? metalc ? metalc13 BA MG MG . F MG 801 1_555 DA O2 PO4 . F PO4 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc14 EA O2 PO4 . G PO4 401 1_555 GA MG MG . G MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.796 ? metalc ? metalc15 FA O2B ADP . G ADP 402 1_555 GA MG MG . G MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.874 ? metalc ? metalc16 FA O2A ADP . G ADP 402 1_555 GA MG MG . G MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.998 ? metalc ? metalc17 HA MG MG . H MG 801 1_555 IA O2 PO4 . H PO4 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.901 ? metalc ? metalc18 HA MG MG . H MG 801 1_555 JA O2B ADP . H ADP 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.864 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 325 n n P O2 PO4 sing 326 n n P O3 PO4 sing 327 n n P O4 PO4 sing 328 n n # _atom_sites.entry_id 8C4E _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 ADP A 1 401 802 ADP ADP . N 4 PO4 A 1 402 803 PO4 PO4 . O 5 MG A 1 403 801 MG MG . P 4 PO4 B 1 401 803 PO4 PO4 . Q 3 ADP B 1 402 802 ADP ADP . R 5 MG B 1 403 801 MG MG . S 3 ADP C 1 401 802 ADP ADP . T 5 MG C 1 402 801 MG MG . U 4 PO4 C 1 403 803 PO4 PO4 . V 5 MG D 1 801 801 MG MG . W 3 ADP D 1 802 802 ADP ADP . X 4 PO4 D 1 803 803 PO4 PO4 . Y 5 MG E 1 801 801 MG MG . Z 3 ADP E 1 802 802 ADP ADP . AA 4 PO4 E 1 803 803 PO4 PO4 . BA 5 MG F 1 801 801 MG MG . CA 3 ADP F 1 802 802 ADP ADP . DA 4 PO4 F 1 803 803 PO4 PO4 . EA 4 PO4 G 1 401 803 PO4 PO4 . FA 3 ADP G 1 402 802 ADP ADP . GA 5 MG G 1 403 801 MG MG . HA 5 MG H 1 801 801 MG MG . IA 4 PO4 H 1 802 803 PO4 PO4 . JA 3 ADP H 1 803 802 ADP ADP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . N 4 223.991 218.532 115.69 1 102.77 ? P PO4 402 A 1 HETATM 2 O O1 PO4 . . . N 4 223.214 218.554 114.397 1 83.26 ? O1 PO4 402 A 1 HETATM 3 O O2 PO4 . . . N 4 225.058 219.599 115.655 1 89.11 ? O2 PO4 402 A 1 HETATM 4 O O3 PO4 . . . N 4 223.059 218.796 116.849 1 86.65 ? O3 PO4 402 A 1 HETATM 5 O O4 PO4 . . . N 4 224.633 217.176 115.859 1 85.52 ? O4 PO4 402 A 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 85 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 5 #