data_8C4J # _model_server_result.job_id PIbYvuh9IXRL6vA4ZsyC7g _model_server_result.datetime_utc '2025-01-10 14:56:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c4j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 8C4J # _exptl.entry_id 8C4J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 109.129 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-methylpyrimidin-4-amine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8C4J _cell.length_a 40.82 _cell.length_b 64.55 _cell.length_c 129.68 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C4J _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,H 1 1 B,E,F,G,I 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C5 H7 N3' _chem_comp.formula_weight 109.129 _chem_comp.id TI5 _chem_comp.mon_nstd_flag . _chem_comp.name 5-methylpyrimidin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N02 C05 TI5 sing 293 n n C06 C04 TI5 sing 294 n n C05 C04 TI5 doub 295 n y C05 N01 TI5 sing 296 n y C04 C07 TI5 sing 297 n y N01 C08 TI5 doub 298 n y C07 N03 TI5 doub 299 n y C08 N03 TI5 sing 300 n y C06 H1 TI5 sing 301 n n C06 H2 TI5 sing 302 n n C06 H3 TI5 sing 303 n n C07 H4 TI5 sing 304 n n C08 H5 TI5 sing 305 n n N02 H6 TI5 sing 306 n n N02 H7 TI5 sing 307 n n # _atom_sites.entry_id 8C4J _atom_sites.fract_transf_matrix[1][1] 0.024498 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015492 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007711 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 TI5 A 1 201 201 TI5 LIG . D 3 CL A 1 202 2 CL CL . E 2 TI5 B 1 201 201 TI5 LIG . F 3 CL B 1 202 3 CL CL . G 3 CL B 1 203 4 CL CL . H 4 HOH A 1 301 73 HOH HOH . H 4 HOH A 2 302 7 HOH HOH . H 4 HOH A 3 303 61 HOH HOH . H 4 HOH A 4 304 36 HOH HOH . H 4 HOH A 5 305 10 HOH HOH . H 4 HOH A 6 306 57 HOH HOH . H 4 HOH A 7 307 26 HOH HOH . H 4 HOH A 8 308 65 HOH HOH . H 4 HOH A 9 309 39 HOH HOH . H 4 HOH A 10 310 43 HOH HOH . H 4 HOH A 11 311 21 HOH HOH . H 4 HOH A 12 312 4 HOH HOH . H 4 HOH A 13 313 37 HOH HOH . H 4 HOH A 14 314 6 HOH HOH . H 4 HOH A 15 315 18 HOH HOH . H 4 HOH A 16 316 48 HOH HOH . H 4 HOH A 17 317 9 HOH HOH . H 4 HOH A 18 318 70 HOH HOH . H 4 HOH A 19 319 35 HOH HOH . H 4 HOH A 20 320 54 HOH HOH . H 4 HOH A 21 321 33 HOH HOH . H 4 HOH A 22 322 22 HOH HOH . H 4 HOH A 23 323 5 HOH HOH . H 4 HOH A 24 324 30 HOH HOH . H 4 HOH A 25 325 38 HOH HOH . H 4 HOH A 26 326 41 HOH HOH . H 4 HOH A 27 327 16 HOH HOH . H 4 HOH A 28 328 19 HOH HOH . H 4 HOH A 29 329 34 HOH HOH . H 4 HOH A 30 330 64 HOH HOH . H 4 HOH A 31 331 66 HOH HOH . H 4 HOH A 32 332 83 HOH HOH . H 4 HOH A 33 333 31 HOH HOH . H 4 HOH A 34 334 84 HOH HOH . H 4 HOH A 35 335 74 HOH HOH . H 4 HOH A 36 336 75 HOH HOH . H 4 HOH A 37 337 85 HOH HOH . H 4 HOH A 38 338 79 HOH HOH . H 4 HOH A 39 339 71 HOH HOH . H 4 HOH A 40 340 58 HOH HOH . H 4 HOH A 41 341 53 HOH HOH . H 4 HOH A 42 342 46 HOH HOH . H 4 HOH A 43 343 76 HOH HOH . H 4 HOH A 44 344 60 HOH HOH . I 4 HOH B 1 301 81 HOH HOH . I 4 HOH B 2 302 42 HOH HOH . I 4 HOH B 3 303 2 HOH HOH . I 4 HOH B 4 304 15 HOH HOH . I 4 HOH B 5 305 24 HOH HOH . I 4 HOH B 6 306 40 HOH HOH . I 4 HOH B 7 307 52 HOH HOH . I 4 HOH B 8 308 72 HOH HOH . I 4 HOH B 9 309 12 HOH HOH . I 4 HOH B 10 310 17 HOH HOH . I 4 HOH B 11 311 8 HOH HOH . I 4 HOH B 12 312 25 HOH HOH . I 4 HOH B 13 313 3 HOH HOH . I 4 HOH B 14 314 20 HOH HOH . I 4 HOH B 15 315 29 HOH HOH . I 4 HOH B 16 316 80 HOH HOH . I 4 HOH B 17 317 1 HOH HOH . I 4 HOH B 18 318 67 HOH HOH . I 4 HOH B 19 319 69 HOH HOH . I 4 HOH B 20 320 13 HOH HOH . I 4 HOH B 21 321 68 HOH HOH . I 4 HOH B 22 322 44 HOH HOH . I 4 HOH B 23 323 77 HOH HOH . I 4 HOH B 24 324 56 HOH HOH . I 4 HOH B 25 325 55 HOH HOH . I 4 HOH B 26 326 14 HOH HOH . I 4 HOH B 27 327 27 HOH HOH . I 4 HOH B 28 328 28 HOH HOH . I 4 HOH B 29 329 82 HOH HOH . I 4 HOH B 30 330 23 HOH HOH . I 4 HOH B 31 331 49 HOH HOH . I 4 HOH B 32 332 11 HOH HOH . I 4 HOH B 33 333 59 HOH HOH . I 4 HOH B 34 334 47 HOH HOH . I 4 HOH B 35 335 45 HOH HOH . I 4 HOH B 36 336 62 HOH HOH . I 4 HOH B 37 337 50 HOH HOH . I 4 HOH B 38 338 32 HOH HOH . I 4 HOH B 39 339 78 HOH HOH . I 4 HOH B 40 340 63 HOH HOH . I 4 HOH B 41 341 51 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C04 TI5 . . . C 2 -10.328 5.374 -24.505 0.97 53.09 ? C04 TI5 201 A 1 HETATM 2 C C05 TI5 . . . C 2 -11.664 5.67 -24.776 0.97 52.46 ? C05 TI5 201 A 1 HETATM 3 C C06 TI5 . . . C 2 -9.239 5.806 -25.39 0.97 54.5 ? C06 TI5 201 A 1 HETATM 4 C C07 TI5 . . . C 2 -10.055 4.633 -23.334 0.97 51.24 ? C07 TI5 201 A 1 HETATM 5 C C08 TI5 . . . C 2 -12.326 4.574 -22.855 0.97 49.14 ? C08 TI5 201 A 1 HETATM 6 N N01 TI5 . . . C 2 -12.691 5.271 -23.965 0.97 49.66 ? N01 TI5 201 A 1 HETATM 7 N N02 TI5 . . . C 2 -11.939 6.4 -25.931 0.97 56.28 ? N02 TI5 201 A 1 HETATM 8 N N03 TI5 . . . C 2 -11.05 4.231 -22.488 0.97 50.92 ? N03 TI5 201 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 359 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 8 #