data_8C4M
#
_model_server_result.job_id            DL9L9SNppkI4JZBDJVoeAg 
_model_server_result.datetime_utc      '2025-01-10 15:48:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8c4m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    8C4M 
#
_exptl.entry_id    8C4M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              267.241 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            ADENOSINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8C4M 
_cell.length_a            42.14 
_cell.length_b            64.52 
_cell.length_c            129.55 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8C4M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C10 H13 N5 O4' 
_chem_comp.formula_weight    267.241 
_chem_comp.id                ADN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              ADENOSINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O5' C5' ADN sing 1 n n 
O5' HO5' ADN sing 2 n n 
C5' C4' ADN sing 3 n n 
C5' "H5'1" ADN sing 4 n n 
C5' "H5'2" ADN sing 5 n n 
C4' O4' ADN sing 6 n n 
C4' C3' ADN sing 7 n n 
C4' H4' ADN sing 8 n n 
O4' C1' ADN sing 9 n n 
C3' O3' ADN sing 10 n n 
C3' C2' ADN sing 11 n n 
C3' H3' ADN sing 12 n n 
O3' HO3' ADN sing 13 n n 
C2' O2' ADN sing 14 n n 
C2' C1' ADN sing 15 n n 
C2' H2' ADN sing 16 n n 
O2' HO2' ADN sing 17 n n 
C1' N9 ADN sing 18 n n 
C1' H1' ADN sing 19 n n 
N9 C8 ADN sing 20 n y 
N9 C4 ADN sing 21 n y 
C8 N7 ADN doub 22 n y 
C8 H8 ADN sing 23 n n 
N7 C5 ADN sing 24 n y 
C5 C6 ADN sing 25 n y 
C5 C4 ADN doub 26 n y 
C6 N6 ADN sing 27 n n 
C6 N1 ADN doub 28 n y 
N6 HN61 ADN sing 29 n n 
N6 HN62 ADN sing 30 n n 
N1 C2 ADN sing 31 n y 
C2 N3 ADN doub 32 n y 
C2 H2 ADN sing 33 n n 
N3 C4 ADN sing 34 n y 
#
_atom_sites.entry_id                     8C4M 
_atom_sites.fract_transf_matrix[1][1]    0.02373 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015499 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007719 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ADN A 1 201 201 ADN ADM . 
D 3 CL A 1 202 2 CL CL . 
E 3 CL B 1 201 3 CL CL . 
F 3 CL B 1 202 4 CL CL . 
G 4 HOH A 1 301 108 HOH HOH . 
G 4 HOH A 2 302 141 HOH HOH . 
G 4 HOH A 3 303 224 HOH HOH . 
G 4 HOH A 4 304 127 HOH HOH . 
G 4 HOH A 5 305 123 HOH HOH . 
G 4 HOH A 6 306 97 HOH HOH . 
G 4 HOH A 7 307 206 HOH HOH . 
G 4 HOH A 8 308 56 HOH HOH . 
G 4 HOH A 9 309 122 HOH HOH . 
G 4 HOH A 10 310 37 HOH HOH . 
G 4 HOH A 11 311 67 HOH HOH . 
G 4 HOH A 12 312 258 HOH HOH . 
G 4 HOH A 13 313 163 HOH HOH . 
G 4 HOH A 14 314 260 HOH HOH . 
G 4 HOH A 15 315 12 HOH HOH . 
G 4 HOH A 16 316 242 HOH HOH . 
G 4 HOH A 17 317 259 HOH HOH . 
G 4 HOH A 18 318 130 HOH HOH . 
G 4 HOH A 19 319 48 HOH HOH . 
G 4 HOH A 20 320 21 HOH HOH . 
G 4 HOH A 21 321 55 HOH HOH . 
G 4 HOH A 22 322 39 HOH HOH . 
G 4 HOH A 23 323 8 HOH HOH . 
G 4 HOH A 24 324 27 HOH HOH . 
G 4 HOH A 25 325 80 HOH HOH . 
G 4 HOH A 26 326 82 HOH HOH . 
G 4 HOH A 27 327 68 HOH HOH . 
G 4 HOH A 28 328 196 HOH HOH . 
G 4 HOH A 29 329 169 HOH HOH . 
G 4 HOH A 30 330 61 HOH HOH . 
G 4 HOH A 31 331 266 HOH HOH . 
G 4 HOH A 32 332 19 HOH HOH . 
G 4 HOH A 33 333 124 HOH HOH . 
G 4 HOH A 34 334 5 HOH HOH . 
G 4 HOH A 35 335 28 HOH HOH . 
G 4 HOH A 36 336 25 HOH HOH . 
G 4 HOH A 37 337 140 HOH HOH . 
G 4 HOH A 38 338 222 HOH HOH . 
G 4 HOH A 39 339 164 HOH HOH . 
G 4 HOH A 40 340 157 HOH HOH . 
G 4 HOH A 41 341 185 HOH HOH . 
G 4 HOH A 42 342 114 HOH HOH . 
G 4 HOH A 43 343 232 HOH HOH . 
G 4 HOH A 44 344 45 HOH HOH . 
G 4 HOH A 45 345 77 HOH HOH . 
G 4 HOH A 46 346 213 HOH HOH . 
G 4 HOH A 47 347 89 HOH HOH . 
G 4 HOH A 48 348 106 HOH HOH . 
G 4 HOH A 49 349 199 HOH HOH . 
G 4 HOH A 50 350 13 HOH HOH . 
G 4 HOH A 51 351 16 HOH HOH . 
G 4 HOH A 52 352 90 HOH HOH . 
G 4 HOH A 53 353 105 HOH HOH . 
G 4 HOH A 54 354 79 HOH HOH . 
G 4 HOH A 55 355 146 HOH HOH . 
G 4 HOH A 56 356 158 HOH HOH . 
G 4 HOH A 57 357 31 HOH HOH . 
G 4 HOH A 58 358 30 HOH HOH . 
G 4 HOH A 59 359 205 HOH HOH . 
G 4 HOH A 60 360 72 HOH HOH . 
G 4 HOH A 61 361 74 HOH HOH . 
G 4 HOH A 62 362 92 HOH HOH . 
G 4 HOH A 63 363 64 HOH HOH . 
G 4 HOH A 64 364 78 HOH HOH . 
G 4 HOH A 65 365 120 HOH HOH . 
G 4 HOH A 66 366 53 HOH HOH . 
G 4 HOH A 67 367 34 HOH HOH . 
G 4 HOH A 68 368 119 HOH HOH . 
G 4 HOH A 69 369 24 HOH HOH . 
G 4 HOH A 70 370 178 HOH HOH . 
G 4 HOH A 71 371 87 HOH HOH . 
G 4 HOH A 72 372 195 HOH HOH . 
G 4 HOH A 73 373 131 HOH HOH . 
G 4 HOH A 74 374 23 HOH HOH . 
G 4 HOH A 75 375 93 HOH HOH . 
G 4 HOH A 76 376 3 HOH HOH . 
G 4 HOH A 77 377 126 HOH HOH . 
G 4 HOH A 78 378 76 HOH HOH . 
G 4 HOH A 79 379 198 HOH HOH . 
G 4 HOH A 80 380 20 HOH HOH . 
G 4 HOH A 81 381 154 HOH HOH . 
G 4 HOH A 82 382 175 HOH HOH . 
G 4 HOH A 83 383 104 HOH HOH . 
G 4 HOH A 84 384 7 HOH HOH . 
G 4 HOH A 85 385 209 HOH HOH . 
G 4 HOH A 86 386 96 HOH HOH . 
G 4 HOH A 87 387 41 HOH HOH . 
G 4 HOH A 88 388 202 HOH HOH . 
G 4 HOH A 89 389 166 HOH HOH . 
G 4 HOH A 90 390 65 HOH HOH . 
G 4 HOH A 91 391 125 HOH HOH . 
G 4 HOH A 92 392 147 HOH HOH . 
G 4 HOH A 93 393 84 HOH HOH . 
G 4 HOH A 94 394 200 HOH HOH . 
G 4 HOH A 95 395 117 HOH HOH . 
G 4 HOH A 96 396 248 HOH HOH . 
G 4 HOH A 97 397 221 HOH HOH . 
G 4 HOH A 98 398 81 HOH HOH . 
G 4 HOH A 99 399 35 HOH HOH . 
G 4 HOH A 100 400 73 HOH HOH . 
G 4 HOH A 101 401 149 HOH HOH . 
G 4 HOH A 102 402 145 HOH HOH . 
G 4 HOH A 103 403 42 HOH HOH . 
G 4 HOH A 104 404 91 HOH HOH . 
G 4 HOH A 105 405 136 HOH HOH . 
G 4 HOH A 106 406 244 HOH HOH . 
G 4 HOH A 107 407 133 HOH HOH . 
G 4 HOH A 108 408 256 HOH HOH . 
G 4 HOH A 109 409 121 HOH HOH . 
G 4 HOH A 110 410 261 HOH HOH . 
G 4 HOH A 111 411 267 HOH HOH . 
G 4 HOH A 112 412 88 HOH HOH . 
G 4 HOH A 113 413 132 HOH HOH . 
G 4 HOH A 114 414 268 HOH HOH . 
G 4 HOH A 115 415 162 HOH HOH . 
H 4 HOH B 1 301 134 HOH HOH . 
H 4 HOH B 2 302 135 HOH HOH . 
H 4 HOH B 3 303 226 HOH HOH . 
H 4 HOH B 4 304 269 HOH HOH . 
H 4 HOH B 5 305 116 HOH HOH . 
H 4 HOH B 6 306 150 HOH HOH . 
H 4 HOH B 7 307 129 HOH HOH . 
H 4 HOH B 8 308 165 HOH HOH . 
H 4 HOH B 9 309 40 HOH HOH . 
H 4 HOH B 10 310 115 HOH HOH . 
H 4 HOH B 11 311 57 HOH HOH . 
H 4 HOH B 12 312 10 HOH HOH . 
H 4 HOH B 13 313 18 HOH HOH . 
H 4 HOH B 14 314 220 HOH HOH . 
H 4 HOH B 15 315 6 HOH HOH . 
H 4 HOH B 16 316 75 HOH HOH . 
H 4 HOH B 17 317 243 HOH HOH . 
H 4 HOH B 18 318 212 HOH HOH . 
H 4 HOH B 19 319 86 HOH HOH . 
H 4 HOH B 20 320 60 HOH HOH . 
H 4 HOH B 21 321 99 HOH HOH . 
H 4 HOH B 22 322 15 HOH HOH . 
H 4 HOH B 23 323 36 HOH HOH . 
H 4 HOH B 24 324 59 HOH HOH . 
H 4 HOH B 25 325 9 HOH HOH . 
H 4 HOH B 26 326 14 HOH HOH . 
H 4 HOH B 27 327 54 HOH HOH . 
H 4 HOH B 28 328 2 HOH HOH . 
H 4 HOH B 29 329 173 HOH HOH . 
H 4 HOH B 30 330 100 HOH HOH . 
H 4 HOH B 31 331 44 HOH HOH . 
H 4 HOH B 32 332 1 HOH HOH . 
H 4 HOH B 33 333 4 HOH HOH . 
H 4 HOH B 34 334 103 HOH HOH . 
H 4 HOH B 35 335 47 HOH HOH . 
H 4 HOH B 36 336 156 HOH HOH . 
H 4 HOH B 37 337 32 HOH HOH . 
H 4 HOH B 38 338 137 HOH HOH . 
H 4 HOH B 39 339 52 HOH HOH . 
H 4 HOH B 40 340 118 HOH HOH . 
H 4 HOH B 41 341 17 HOH HOH . 
H 4 HOH B 42 342 38 HOH HOH . 
H 4 HOH B 43 343 62 HOH HOH . 
H 4 HOH B 44 344 26 HOH HOH . 
H 4 HOH B 45 345 43 HOH HOH . 
H 4 HOH B 46 346 113 HOH HOH . 
H 4 HOH B 47 347 83 HOH HOH . 
H 4 HOH B 48 348 102 HOH HOH . 
H 4 HOH B 49 349 70 HOH HOH . 
H 4 HOH B 50 350 85 HOH HOH . 
H 4 HOH B 51 351 177 HOH HOH . 
H 4 HOH B 52 352 151 HOH HOH . 
H 4 HOH B 53 353 22 HOH HOH . 
H 4 HOH B 54 354 46 HOH HOH . 
H 4 HOH B 55 355 172 HOH HOH . 
H 4 HOH B 56 356 95 HOH HOH . 
H 4 HOH B 57 357 152 HOH HOH . 
H 4 HOH B 58 358 216 HOH HOH . 
H 4 HOH B 59 359 262 HOH HOH . 
H 4 HOH B 60 360 50 HOH HOH . 
H 4 HOH B 61 361 155 HOH HOH . 
H 4 HOH B 62 362 33 HOH HOH . 
H 4 HOH B 63 363 71 HOH HOH . 
H 4 HOH B 64 364 58 HOH HOH . 
H 4 HOH B 65 365 153 HOH HOH . 
H 4 HOH B 66 366 69 HOH HOH . 
H 4 HOH B 67 367 214 HOH HOH . 
H 4 HOH B 68 368 51 HOH HOH . 
H 4 HOH B 69 369 29 HOH HOH . 
H 4 HOH B 70 370 142 HOH HOH . 
H 4 HOH B 71 371 211 HOH HOH . 
H 4 HOH B 72 372 215 HOH HOH . 
H 4 HOH B 73 373 144 HOH HOH . 
H 4 HOH B 74 374 94 HOH HOH . 
H 4 HOH B 75 375 139 HOH HOH . 
H 4 HOH B 76 376 98 HOH HOH . 
H 4 HOH B 77 377 187 HOH HOH . 
H 4 HOH B 78 378 263 HOH HOH . 
H 4 HOH B 79 379 66 HOH HOH . 
H 4 HOH B 80 380 180 HOH HOH . 
H 4 HOH B 81 381 264 HOH HOH . 
H 4 HOH B 82 382 11 HOH HOH . 
H 4 HOH B 83 383 49 HOH HOH . 
H 4 HOH B 84 384 159 HOH HOH . 
H 4 HOH B 85 385 171 HOH HOH . 
H 4 HOH B 86 386 101 HOH HOH . 
H 4 HOH B 87 387 218 HOH HOH . 
H 4 HOH B 88 388 225 HOH HOH . 
H 4 HOH B 89 389 176 HOH HOH . 
H 4 HOH B 90 390 128 HOH HOH . 
H 4 HOH B 91 391 63 HOH HOH . 
H 4 HOH B 92 392 246 HOH HOH . 
H 4 HOH B 93 393 265 HOH HOH . 
H 4 HOH B 94 394 257 HOH HOH . 
H 4 HOH B 95 395 112 HOH HOH . 
H 4 HOH B 96 396 107 HOH HOH . 
H 4 HOH B 97 397 110 HOH HOH . 
H 4 HOH B 98 398 255 HOH HOH . 
H 4 HOH B 99 399 143 HOH HOH . 
H 4 HOH B 100 400 109 HOH HOH . 
H 4 HOH B 101 401 161 HOH HOH . 
H 4 HOH B 102 402 111 HOH HOH . 
H 4 HOH B 103 403 247 HOH HOH . 
H 4 HOH B 104 404 241 HOH HOH . 
H 4 HOH B 105 405 160 HOH HOH . 
H 4 HOH B 106 406 251 HOH HOH . 
H 4 HOH B 107 407 250 HOH HOH . 
H 4 HOH B 108 408 253 HOH HOH . 
H 4 HOH B 109 409 249 HOH HOH . 
H 4 HOH B 110 410 254 HOH HOH . 
H 4 HOH B 111 411 252 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O5' ADN . . . C 2 -6.588 5.77 -19.136 1 72.12 ? O5' ADN 201 A 1 
HETATM 2 C C5' ADN . . . C 2 -6.362 4.4 -19.44 1 72.75 ? C5' ADN 201 A 1 
HETATM 3 C C4' ADN . . . C 2 -7.373 3.879 -20.432 1 74.11 ? C4' ADN 201 A 1 
HETATM 4 O O4' ADN . . . C 2 -8.261 4.958 -20.823 1 75.07 ? O4' ADN 201 A 1 
HETATM 5 C C3' ADN . . . C 2 -8.298 2.781 -19.919 1 74.66 ? C3' ADN 201 A 1 
HETATM 6 O O3' ADN . . . C 2 -7.745 1.485 -20.062 1 74.2 ? O3' ADN 201 A 1 
HETATM 7 C C2' ADN . . . C 2 -9.574 2.987 -20.726 1 75.24 ? C2' ADN 201 A 1 
HETATM 8 O O2' ADN . . . C 2 -10.703 2.619 -19.947 1 74.84 ? O2' ADN 201 A 1 
HETATM 9 C C1' ADN . . . C 2 -9.593 4.502 -20.882 1 75.48 ? C1' ADN 201 A 1 
HETATM 10 N N9 ADN . . . C 2 -10.175 4.942 -22.165 1 76.28 ? N9 ADN 201 A 1 
HETATM 11 C C8 ADN . . . C 2 -9.435 5.482 -23.065 1 76.84 ? C8 ADN 201 A 1 
HETATM 12 N N7 ADN . . . C 2 -10.236 5.797 -24.085 1 76.68 ? N7 ADN 201 A 1 
HETATM 13 C C5 ADN . . . C 2 -11.487 5.406 -23.717 1 75.98 ? C5 ADN 201 A 1 
HETATM 14 C C6 ADN . . . C 2 -12.708 5.443 -24.302 1 75.36 ? C6 ADN 201 A 1 
HETATM 15 N N6 ADN . . . C 2 -12.844 6.012 -25.63 1 75.14 ? N6 ADN 201 A 1 
HETATM 16 N N1 ADN . . . C 2 -13.766 4.974 -23.684 1 75.17 ? N1 ADN 201 A 1 
HETATM 17 C C2 ADN . . . C 2 -13.585 4.46 -22.462 1 75.62 ? C2 ADN 201 A 1 
HETATM 18 N N3 ADN . . . C 2 -12.438 4.354 -21.759 1 76.24 ? N3 ADN 201 A 1 
HETATM 19 C C4 ADN . . . C 2 -11.426 4.852 -22.453 1 76.18 ? C4 ADN 201 A 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           363 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           19 
#