data_8C4N
#
_model_server_result.job_id            RnkxpisIYYKGpVQjhjQBsA 
_model_server_result.datetime_utc      '2025-01-10 15:24:56' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8c4n 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    8C4N 
#
_exptl.entry_id    8C4N 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8C4N 
_cell.length_a            41.61 
_cell.length_b            64.72 
_cell.length_c            129.92 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8C4N 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,H 1 1 
B,E,F,G,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O ASN 56 A ASN 51 1_555 D NA NA . A NA 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? 
metalc ? metalc2 D NA NA . A NA 202 1_555 B O ASN 56 B ASN 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? 
metalc ? metalc3 D NA NA . A NA 202 1_555 I O HOH . B HOH 323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.913 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     8C4N 
_atom_sites.fract_transf_matrix[1][1]    0.024033 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015451 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007697 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 AMP A 1 201 201 AMP AMP . 
D 3 NA A 1 202 1 NA NA . 
E 2 AMP B 1 201 201 AMP AMP . 
F 4 CL B 1 202 3 CL CL . 
G 4 CL B 1 203 4 CL CL . 
H 5 HOH A 1 301 25 HOH HOH . 
H 5 HOH A 2 302 10 HOH HOH . 
H 5 HOH A 3 303 37 HOH HOH . 
H 5 HOH A 4 304 23 HOH HOH . 
H 5 HOH A 5 305 5 HOH HOH . 
H 5 HOH A 6 306 6 HOH HOH . 
H 5 HOH A 7 307 14 HOH HOH . 
H 5 HOH A 8 308 2 HOH HOH . 
H 5 HOH A 9 309 45 HOH HOH . 
H 5 HOH A 10 310 48 HOH HOH . 
H 5 HOH A 11 311 18 HOH HOH . 
H 5 HOH A 12 312 58 HOH HOH . 
H 5 HOH A 13 313 19 HOH HOH . 
H 5 HOH A 14 314 11 HOH HOH . 
H 5 HOH A 15 315 60 HOH HOH . 
H 5 HOH A 16 316 46 HOH HOH . 
H 5 HOH A 17 317 62 HOH HOH . 
H 5 HOH A 18 318 53 HOH HOH . 
H 5 HOH A 19 319 24 HOH HOH . 
H 5 HOH A 20 320 36 HOH HOH . 
H 5 HOH A 21 321 51 HOH HOH . 
H 5 HOH A 22 322 50 HOH HOH . 
H 5 HOH A 23 323 21 HOH HOH . 
H 5 HOH A 24 324 9 HOH HOH . 
H 5 HOH A 25 325 13 HOH HOH . 
H 5 HOH A 26 326 49 HOH HOH . 
H 5 HOH A 27 327 40 HOH HOH . 
H 5 HOH A 28 328 56 HOH HOH . 
H 5 HOH A 29 329 7 HOH HOH . 
H 5 HOH A 30 330 33 HOH HOH . 
H 5 HOH A 31 331 57 HOH HOH . 
H 5 HOH A 32 332 54 HOH HOH . 
I 5 HOH B 1 301 26 HOH HOH . 
I 5 HOH B 2 302 16 HOH HOH . 
I 5 HOH B 3 303 43 HOH HOH . 
I 5 HOH B 4 304 20 HOH HOH . 
I 5 HOH B 5 305 29 HOH HOH . 
I 5 HOH B 6 306 1 HOH HOH . 
I 5 HOH B 7 307 4 HOH HOH . 
I 5 HOH B 8 308 8 HOH HOH . 
I 5 HOH B 9 309 30 HOH HOH . 
I 5 HOH B 10 310 3 HOH HOH . 
I 5 HOH B 11 311 28 HOH HOH . 
I 5 HOH B 12 312 32 HOH HOH . 
I 5 HOH B 13 313 39 HOH HOH . 
I 5 HOH B 14 314 61 HOH HOH . 
I 5 HOH B 15 315 47 HOH HOH . 
I 5 HOH B 16 316 35 HOH HOH . 
I 5 HOH B 17 317 22 HOH HOH . 
I 5 HOH B 18 318 44 HOH HOH . 
I 5 HOH B 19 319 38 HOH HOH . 
I 5 HOH B 20 320 55 HOH HOH . 
I 5 HOH B 21 321 34 HOH HOH . 
I 5 HOH B 22 322 31 HOH HOH . 
I 5 HOH B 23 323 15 HOH HOH . 
I 5 HOH B 24 324 27 HOH HOH . 
I 5 HOH B 25 325 12 HOH HOH . 
I 5 HOH B 26 326 42 HOH HOH . 
I 5 HOH B 27 327 59 HOH HOH . 
I 5 HOH B 28 328 17 HOH HOH . 
I 5 HOH B 29 329 41 HOH HOH . 
I 5 HOH B 30 330 52 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . C 2 -3.797 7.068 -20.895 0.95 128.74 ? P AMP 201 A 1 
HETATM 2 O O1P AMP . . . C 2 -4.034 7.501 -22.322 0.95 115.53 ? O1P AMP 201 A 1 
HETATM 3 O O2P AMP . . . C 2 -3.927 8.175 -19.87 0.95 96.77 ? O2P AMP 201 A 1 
HETATM 4 O O3P AMP . . . C 2 -2.589 6.18 -20.709 0.95 98.72 ? O3P AMP 201 A 1 
HETATM 5 O O5' AMP . . . C 2 -5.038 6.113 -20.591 0.95 103.87 ? O5' AMP 201 A 1 
HETATM 6 C C5' AMP . . . C 2 -5.313 4.99 -21.416 0.95 90.88 ? C5' AMP 201 A 1 
HETATM 7 C C4' AMP . . . C 2 -6.529 4.23 -20.946 0.95 77.23 ? C4' AMP 201 A 1 
HETATM 8 O O4' AMP . . . C 2 -7.691 5.096 -20.962 0.95 65.98 ? O4' AMP 201 A 1 
HETATM 9 C C3' AMP . . . C 2 -6.928 3.057 -21.823 0.95 70.1 ? C3' AMP 201 A 1 
HETATM 10 O O3' AMP . . . C 2 -6.187 1.886 -21.528 0.95 84.92 ? O3' AMP 201 A 1 
HETATM 11 C C2' AMP . . . C 2 -8.422 2.913 -21.557 0.95 67.77 ? C2' AMP 201 A 1 
HETATM 12 O O2' AMP . . . C 2 -8.644 2.199 -20.352 0.95 66.57 ? O2' AMP 201 A 1 
HETATM 13 C C1' AMP . . . C 2 -8.842 4.36 -21.325 0.95 64.97 ? C1' AMP 201 A 1 
HETATM 14 N N9 AMP . . . C 2 -9.442 4.992 -22.516 0.95 56.7 ? N9 AMP 201 A 1 
HETATM 15 C C8 AMP . . . C 2 -8.755 5.62 -23.489 0.95 63.35 ? C8 AMP 201 A 1 
HETATM 16 N N7 AMP . . . C 2 -9.59 6.142 -24.429 0.95 59.35 ? N7 AMP 201 A 1 
HETATM 17 C C5 AMP . . . C 2 -10.848 5.852 -24.054 0.95 57.19 ? C5 AMP 201 A 1 
HETATM 18 C C6 AMP . . . C 2 -12.199 6.105 -24.605 0.95 50.21 ? C6 AMP 201 A 1 
HETATM 19 N N6 AMP . . . C 2 -12.387 6.792 -25.764 0.95 51.11 ? N6 AMP 201 A 1 
HETATM 20 N N1 AMP . . . C 2 -13.248 5.624 -23.908 0.95 47.02 ? N1 AMP 201 A 1 
HETATM 21 C C2 AMP . . . C 2 -13.089 4.942 -22.754 0.95 49.09 ? C2 AMP 201 A 1 
HETATM 22 N N3 AMP . . . C 2 -11.893 4.67 -22.193 0.95 52.65 ? N3 AMP 201 A 1 
HETATM 23 C C4 AMP . . . C 2 -10.75 5.098 -22.79 0.95 53.34 ? C4 AMP 201 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           869 
_model_server_stats.encode_time_ms          15 
_model_server_stats.element_count           23 
#