data_8C4O # _model_server_result.job_id leY84LmjTOR_qpQgnZte7w _model_server_result.datetime_utc '2024-12-18 18:03:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c4o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 8C4O # _exptl.entry_id 8C4O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8C4O _cell.length_a 42.5 _cell.length_b 64.65 _cell.length_c 129.39 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C4O _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,J 1 1 B,F,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 16 A HIS 11 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc2 A NE2 HIS 75 A HIS 70 1_555 D MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc3 D MN MN . A MN 202 1_555 J O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc4 D MN MN . A MN 202 1_555 J O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.856 ? metalc ? metalc5 B NE2 HIS 75 B HIS 70 1_555 I MN MN . B MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc6 B OE2 GLU 129 B GLU 124 1_555 H MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc7 F O2G ATP . B ATP 201 1_555 H MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc8 F O2B ATP . B ATP 201 1_555 H MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc9 F O1A ATP . B ATP 201 1_555 H MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc10 I MN MN . B MN 204 1_555 K O HOH . B HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc11 I MN MN . B MN 204 1_555 K O HOH . B HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 8C4O _atom_sites.fract_transf_matrix[1][1] 0.023529 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015468 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007729 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 201 2 MN MN . D 2 MN A 1 202 3 MN MN . E 3 ATP A 1 203 201 ATP ATP . F 3 ATP B 1 201 201 ATP ATP . G 4 CL B 1 202 3 CL CL . H 5 MG B 1 203 1 MG MG . I 2 MN B 1 204 1 MN MN . J 6 HOH A 1 301 36 HOH HOH . J 6 HOH A 2 302 3 HOH HOH . J 6 HOH A 3 303 2 HOH HOH . J 6 HOH A 4 304 18 HOH HOH . J 6 HOH A 5 305 35 HOH HOH . J 6 HOH A 6 306 30 HOH HOH . J 6 HOH A 7 307 28 HOH HOH . J 6 HOH A 8 308 16 HOH HOH . J 6 HOH A 9 309 15 HOH HOH . J 6 HOH A 10 310 45 HOH HOH . J 6 HOH A 11 311 27 HOH HOH . J 6 HOH A 12 312 22 HOH HOH . J 6 HOH A 13 313 7 HOH HOH . J 6 HOH A 14 314 4 HOH HOH . J 6 HOH A 15 315 26 HOH HOH . J 6 HOH A 16 316 13 HOH HOH . J 6 HOH A 17 317 12 HOH HOH . J 6 HOH A 18 318 14 HOH HOH . J 6 HOH A 19 319 23 HOH HOH . J 6 HOH A 20 320 21 HOH HOH . J 6 HOH A 21 321 19 HOH HOH . J 6 HOH A 22 322 46 HOH HOH . J 6 HOH A 23 323 8 HOH HOH . J 6 HOH A 24 324 34 HOH HOH . J 6 HOH A 25 325 31 HOH HOH . J 6 HOH A 26 326 32 HOH HOH . J 6 HOH A 27 327 24 HOH HOH . K 6 HOH B 1 301 38 HOH HOH . K 6 HOH B 2 302 20 HOH HOH . K 6 HOH B 3 303 41 HOH HOH . K 6 HOH B 4 304 6 HOH HOH . K 6 HOH B 5 305 17 HOH HOH . K 6 HOH B 6 306 5 HOH HOH . K 6 HOH B 7 307 40 HOH HOH . K 6 HOH B 8 308 9 HOH HOH . K 6 HOH B 9 309 1 HOH HOH . K 6 HOH B 10 310 33 HOH HOH . K 6 HOH B 11 311 43 HOH HOH . K 6 HOH B 12 312 29 HOH HOH . K 6 HOH B 13 313 37 HOH HOH . K 6 HOH B 14 314 10 HOH HOH . K 6 HOH B 15 315 25 HOH HOH . K 6 HOH B 16 316 42 HOH HOH . K 6 HOH B 17 317 11 HOH HOH . K 6 HOH B 18 318 44 HOH HOH . K 6 HOH B 19 319 39 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . E 3 -5.595 7.509 -15.483 1 104.74 ? PG ATP 203 A 1 HETATM 2 O O1G ATP . . . E 3 -4.629 8.211 -14.581 1 97.14 ? O1G ATP 203 A 1 HETATM 3 O O2G ATP . . . E 3 -6.289 6.343 -14.774 1 87.76 ? O2G ATP 203 A 1 HETATM 4 O O3G ATP . . . E 3 -6.661 8.433 -16.172 1 91.94 ? O3G ATP 203 A 1 HETATM 5 P PB ATP . . . E 3 -4.173 7.251 -18.193 1 124.53 ? PB ATP 203 A 1 HETATM 6 O O1B ATP . . . E 3 -5.199 7.771 -19.133 1 97.24 ? O1B ATP 203 A 1 HETATM 7 O O2B ATP . . . E 3 -2.966 8.139 -17.853 1 111.84 ? O2B ATP 203 A 1 HETATM 8 O O3B ATP . . . E 3 -4.801 6.83 -16.742 1 118.72 ? O3B ATP 203 A 1 HETATM 9 P PA ATP . . . E 3 -3.289 5.179 -20.172 1 125.75 ? PA ATP 203 A 1 HETATM 10 O O1A ATP . . . E 3 -2.089 4.316 -20.077 1 115.13 ? O1A ATP 203 A 1 HETATM 11 O O2A ATP . . . E 3 -3.224 6.323 -21.191 1 108.78 ? O2A ATP 203 A 1 HETATM 12 O O3A ATP . . . E 3 -3.614 5.856 -18.732 1 122.78 ? O3A ATP 203 A 1 HETATM 13 O O5' ATP . . . E 3 -4.587 4.322 -20.477 1 111.16 ? O5' ATP 203 A 1 HETATM 14 C C5' ATP . . . E 3 -5.835 4.94 -20.873 1 96.34 ? C5' ATP 203 A 1 HETATM 15 C C4' ATP . . . E 3 -7.015 4.19 -20.287 1 86.2 ? C4' ATP 203 A 1 HETATM 16 O O4' ATP . . . E 3 -8.214 4.85 -20.746 1 77.16 ? O4' ATP 203 A 1 HETATM 17 C C3' ATP . . . E 3 -7.056 2.796 -20.911 1 82 ? C3' ATP 203 A 1 HETATM 18 O O3' ATP . . . E 3 -7.677 1.845 -20.052 1 77.33 ? O3' ATP 203 A 1 HETATM 19 C C2' ATP . . . E 3 -8.113 2.943 -22.001 1 79.22 ? C2' ATP 203 A 1 HETATM 20 O O2' ATP . . . E 3 -8.894 1.761 -21.936 1 86.25 ? O2' ATP 203 A 1 HETATM 21 C C1' ATP . . . E 3 -9.069 3.923 -21.355 1 72.96 ? C1' ATP 203 A 1 HETATM 22 N N9 ATP . . . E 3 -9.788 4.65 -22.386 1 71.48 ? N9 ATP 203 A 1 HETATM 23 C C8 ATP . . . E 3 -9.27 5.465 -23.363 1 73.72 ? C8 ATP 203 A 1 HETATM 24 N N7 ATP . . . E 3 -10.173 5.988 -24.16 1 72.16 ? N7 ATP 203 A 1 HETATM 25 C C5 ATP . . . E 3 -11.367 5.5 -23.658 1 69.34 ? C5 ATP 203 A 1 HETATM 26 C C6 ATP . . . E 3 -12.705 5.696 -24.044 1 65.1 ? C6 ATP 203 A 1 HETATM 27 N N6 ATP . . . E 3 -13.074 6.471 -25.072 1 64.47 ? N6 ATP 203 A 1 HETATM 28 N N1 ATP . . . E 3 -13.654 5.017 -23.363 1 60.34 ? N1 ATP 203 A 1 HETATM 29 C C2 ATP . . . E 3 -13.287 4.253 -22.331 1 62.31 ? C2 ATP 203 A 1 HETATM 30 N N3 ATP . . . E 3 -12.062 4.013 -21.856 1 64.02 ? N3 ATP 203 A 1 HETATM 31 C C4 ATP . . . E 3 -11.146 4.669 -22.57 1 68.5 ? C4 ATP 203 A 1 HETATM 32 H "H5'1" ATP . . . E 3 -5.852 5.857 -20.556 1 115.61 ? "H5'1" ATP 203 A 1 HETATM 33 H "H5'2" ATP . . . E 3 -5.902 4.932 -21.841 1 115.61 ? "H5'2" ATP 203 A 1 HETATM 34 H H4' ATP . . . E 3 -7.032 4.165 -19.317 1 103.44 ? H4' ATP 203 A 1 HETATM 35 H H3' ATP . . . E 3 -6.151 2.589 -21.191 1 98.4 ? H3' ATP 203 A 1 HETATM 36 H HO3' ATP . . . E 3 -7.098 1.271 -19.805 1 92.79 ? HO3' ATP 203 A 1 HETATM 37 H H2' ATP . . . E 3 -7.729 3.219 -22.848 1 95.06 ? H2' ATP 203 A 1 HETATM 38 H HO2' ATP . . . E 3 -9.274 1.648 -22.689 1 103.5 ? HO2' ATP 203 A 1 HETATM 39 H H1' ATP . . . E 3 -9.665 3.512 -20.71 1 87.56 ? H1' ATP 203 A 1 HETATM 40 H H8 ATP . . . E 3 -8.359 5.632 -23.451 1 88.46 ? H8 ATP 203 A 1 HETATM 41 H HN61 ATP . . . E 3 -12.485 6.899 -25.531 1 77.36 ? HN61 ATP 203 A 1 HETATM 42 H HN62 ATP . . . E 3 -13.904 6.522 -25.293 1 77.36 ? HN62 ATP 203 A 1 HETATM 43 H H2 ATP . . . E 3 -13.982 3.83 -21.879 1 74.77 ? H2 ATP 203 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 513 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #