data_8C4O # _model_server_result.job_id lc7ijW9cjiPbf0dC0ajljw _model_server_result.datetime_utc '2024-12-18 17:50:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c4o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":204}' # _entry.id 8C4O # _exptl.entry_id 8C4O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8C4O _cell.length_a 42.5 _cell.length_b 64.65 _cell.length_c 129.39 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C4O _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,J 1 1 B,F,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND1 HIS 16 A HIS 11 1_555 C MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.509 ? metalc ? metalc2 A NE2 HIS 75 A HIS 70 1_555 D MN MN . A MN 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.219 ? metalc ? metalc3 D MN MN . A MN 202 1_555 J O HOH . A HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc4 D MN MN . A MN 202 1_555 J O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.856 ? metalc ? metalc5 B NE2 HIS 75 B HIS 70 1_555 I MN MN . B MN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc6 B OE2 GLU 129 B GLU 124 1_555 H MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc7 F O2G ATP . B ATP 201 1_555 H MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc8 F O2B ATP . B ATP 201 1_555 H MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc9 F O1A ATP . B ATP 201 1_555 H MG MG . B MG 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc10 I MN MN . B MN 204 1_555 K O HOH . B HOH 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc11 I MN MN . B MN 204 1_555 K O HOH . B HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8C4O _atom_sites.fract_transf_matrix[1][1] 0.023529 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015468 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007729 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MN A 1 201 2 MN MN . D 2 MN A 1 202 3 MN MN . E 3 ATP A 1 203 201 ATP ATP . F 3 ATP B 1 201 201 ATP ATP . G 4 CL B 1 202 3 CL CL . H 5 MG B 1 203 1 MG MG . I 2 MN B 1 204 1 MN MN . J 6 HOH A 1 301 36 HOH HOH . J 6 HOH A 2 302 3 HOH HOH . J 6 HOH A 3 303 2 HOH HOH . J 6 HOH A 4 304 18 HOH HOH . J 6 HOH A 5 305 35 HOH HOH . J 6 HOH A 6 306 30 HOH HOH . J 6 HOH A 7 307 28 HOH HOH . J 6 HOH A 8 308 16 HOH HOH . J 6 HOH A 9 309 15 HOH HOH . J 6 HOH A 10 310 45 HOH HOH . J 6 HOH A 11 311 27 HOH HOH . J 6 HOH A 12 312 22 HOH HOH . J 6 HOH A 13 313 7 HOH HOH . J 6 HOH A 14 314 4 HOH HOH . J 6 HOH A 15 315 26 HOH HOH . J 6 HOH A 16 316 13 HOH HOH . J 6 HOH A 17 317 12 HOH HOH . J 6 HOH A 18 318 14 HOH HOH . J 6 HOH A 19 319 23 HOH HOH . J 6 HOH A 20 320 21 HOH HOH . J 6 HOH A 21 321 19 HOH HOH . J 6 HOH A 22 322 46 HOH HOH . J 6 HOH A 23 323 8 HOH HOH . J 6 HOH A 24 324 34 HOH HOH . J 6 HOH A 25 325 31 HOH HOH . J 6 HOH A 26 326 32 HOH HOH . J 6 HOH A 27 327 24 HOH HOH . K 6 HOH B 1 301 38 HOH HOH . K 6 HOH B 2 302 20 HOH HOH . K 6 HOH B 3 303 41 HOH HOH . K 6 HOH B 4 304 6 HOH HOH . K 6 HOH B 5 305 17 HOH HOH . K 6 HOH B 6 306 5 HOH HOH . K 6 HOH B 7 307 40 HOH HOH . K 6 HOH B 8 308 9 HOH HOH . K 6 HOH B 9 309 1 HOH HOH . K 6 HOH B 10 310 33 HOH HOH . K 6 HOH B 11 311 43 HOH HOH . K 6 HOH B 12 312 29 HOH HOH . K 6 HOH B 13 313 37 HOH HOH . K 6 HOH B 14 314 10 HOH HOH . K 6 HOH B 15 315 25 HOH HOH . K 6 HOH B 16 316 42 HOH HOH . K 6 HOH B 17 317 11 HOH HOH . K 6 HOH B 18 318 44 HOH HOH . K 6 HOH B 19 319 39 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 2 _atom_site.Cartn_x -5.03 _atom_site.Cartn_y -17.705 _atom_site.Cartn_z -5.109 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 89.54 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 204 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 25 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #