data_8C5H
#
_model_server_result.job_id            yLge6XNcdYOmiWfZbwaR3A 
_model_server_result.datetime_utc      '2025-07-01 23:18:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8c5h 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":201}' 
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_entry.id    8C5H 
#
_exptl.entry_id    8C5H 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8C5H 
_cell.length_a            52.41 
_cell.length_b            65.75 
_cell.length_c            66.91 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 8C5H 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
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_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 29 N CYS 29 1_555 B SG CYS 103 N CYS 103 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc1 A OD1 ASP 39 S ASP 172 1_555 C CA CA . S CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? 
metalc ? metalc2 A OD2 ASP 39 S ASP 172 1_555 C CA CA . S CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.988 ? 
metalc ? metalc3 A OD2 ASP 45 S ASP 178 1_555 C CA CA . S CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? 
metalc ? metalc4 A OD1 ASP 97 S ASP 230 1_555 C CA CA . S CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? 
metalc ? metalc5 A OD2 ASP 97 S ASP 230 1_555 C CA CA . S CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? 
metalc ? metalc6 A O PHE 98 S PHE 231 1_555 C CA CA . S CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     8C5H 
_atom_sites.fract_transf_matrix[1][1]    0.01908 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015209 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014945 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CA S 1 301 1 CA CA . 
D 4 GOL S 1 302 202 GOL GOL . 
E 4 GOL S 1 303 203 GOL GOL . 
F 4 GOL S 1 304 205 GOL GOL . 
G 4 GOL N 1 201 201 GOL GOL . 
H 4 GOL N 1 202 204 GOL GOL . 
I 4 GOL N 1 203 206 GOL GOL . 
J 5 HOH S 1 401 42 HOH HOH . 
J 5 HOH S 2 402 16 HOH HOH . 
J 5 HOH S 3 403 11 HOH HOH . 
J 5 HOH S 4 404 7 HOH HOH . 
J 5 HOH S 5 405 10 HOH HOH . 
J 5 HOH S 6 406 12 HOH HOH . 
J 5 HOH S 7 407 9 HOH HOH . 
J 5 HOH S 8 408 17 HOH HOH . 
J 5 HOH S 9 409 29 HOH HOH . 
J 5 HOH S 10 410 3 HOH HOH . 
J 5 HOH S 11 411 45 HOH HOH . 
J 5 HOH S 12 412 36 HOH HOH . 
J 5 HOH S 13 413 33 HOH HOH . 
J 5 HOH S 14 414 37 HOH HOH . 
J 5 HOH S 15 415 23 HOH HOH . 
J 5 HOH S 16 416 26 HOH HOH . 
J 5 HOH S 17 417 2 HOH HOH . 
J 5 HOH S 18 418 1 HOH HOH . 
J 5 HOH S 19 419 30 HOH HOH . 
J 5 HOH S 20 420 46 HOH HOH . 
J 5 HOH S 21 421 38 HOH HOH . 
K 5 HOH N 1 301 31 HOH HOH . 
K 5 HOH N 2 302 19 HOH HOH . 
K 5 HOH N 3 303 48 HOH HOH . 
K 5 HOH N 4 304 14 HOH HOH . 
K 5 HOH N 5 305 20 HOH HOH . 
K 5 HOH N 6 306 40 HOH HOH . 
K 5 HOH N 7 307 6 HOH HOH . 
K 5 HOH N 8 308 25 HOH HOH . 
K 5 HOH N 9 309 27 HOH HOH . 
K 5 HOH N 10 310 47 HOH HOH . 
K 5 HOH N 11 311 24 HOH HOH . 
K 5 HOH N 12 312 22 HOH HOH . 
K 5 HOH N 13 313 18 HOH HOH . 
K 5 HOH N 14 314 5 HOH HOH . 
K 5 HOH N 15 315 13 HOH HOH . 
K 5 HOH N 16 316 15 HOH HOH . 
K 5 HOH N 17 317 8 HOH HOH . 
K 5 HOH N 18 318 44 HOH HOH . 
K 5 HOH N 19 319 41 HOH HOH . 
K 5 HOH N 20 320 32 HOH HOH . 
K 5 HOH N 21 321 43 HOH HOH . 
K 5 HOH N 22 322 35 HOH HOH . 
K 5 HOH N 23 323 34 HOH HOH . 
K 5 HOH N 24 324 21 HOH HOH . 
K 5 HOH N 25 325 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . G 4 -1.834 6.361 7.514 1 35.85 ? C1 GOL 201 N 1 
HETATM 2 O O1 GOL . . . G 4 -2.882 7.278 7.41 1 37.11 ? O1 GOL 201 N 1 
HETATM 3 C C2 GOL . . . G 4 -0.523 7.195 7.449 1 34.31 ? C2 GOL 201 N 1 
HETATM 4 O O2 GOL . . . G 4 0.574 6.478 7.869 1 34.33 ? O2 GOL 201 N 1 
HETATM 5 C C3 GOL . . . G 4 -0.383 7.715 5.989 1 34.94 ? C3 GOL 201 N 1 
HETATM 6 O O3 GOL . . . G 4 0.954 8.204 5.837 1 34.2 ? O3 GOL 201 N 1 
#
_model_server_stats.io_time_ms              51 
_model_server_stats.parse_time_ms           24 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           246 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#