data_8C5H # _model_server_result.job_id 2QcGTBimbr2JqoLh-BbbPQ _model_server_result.datetime_utc '2025-07-03 16:51:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c5h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 8C5H # _exptl.entry_id 8C5H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8C5H _cell.length_a 52.41 _cell.length_b 65.75 _cell.length_c 66.91 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C5H _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 29 N CYS 29 1_555 B SG CYS 103 N CYS 103 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.081 ? metalc ? metalc1 A OD1 ASP 39 S ASP 172 1_555 C CA CA . S CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.575 ? metalc ? metalc2 A OD2 ASP 39 S ASP 172 1_555 C CA CA . S CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.988 ? metalc ? metalc3 A OD2 ASP 45 S ASP 178 1_555 C CA CA . S CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc4 A OD1 ASP 97 S ASP 230 1_555 C CA CA . S CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.387 ? metalc ? metalc5 A OD2 ASP 97 S ASP 230 1_555 C CA CA . S CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc6 A O PHE 98 S PHE 231 1_555 C CA CA . S CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8C5H _atom_sites.fract_transf_matrix[1][1] 0.01908 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015209 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014945 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA S 1 301 1 CA CA . D 4 GOL S 1 302 202 GOL GOL . E 4 GOL S 1 303 203 GOL GOL . F 4 GOL S 1 304 205 GOL GOL . G 4 GOL N 1 201 201 GOL GOL . H 4 GOL N 1 202 204 GOL GOL . I 4 GOL N 1 203 206 GOL GOL . J 5 HOH S 1 401 42 HOH HOH . J 5 HOH S 2 402 16 HOH HOH . J 5 HOH S 3 403 11 HOH HOH . J 5 HOH S 4 404 7 HOH HOH . J 5 HOH S 5 405 10 HOH HOH . J 5 HOH S 6 406 12 HOH HOH . J 5 HOH S 7 407 9 HOH HOH . J 5 HOH S 8 408 17 HOH HOH . J 5 HOH S 9 409 29 HOH HOH . J 5 HOH S 10 410 3 HOH HOH . J 5 HOH S 11 411 45 HOH HOH . J 5 HOH S 12 412 36 HOH HOH . J 5 HOH S 13 413 33 HOH HOH . J 5 HOH S 14 414 37 HOH HOH . J 5 HOH S 15 415 23 HOH HOH . J 5 HOH S 16 416 26 HOH HOH . J 5 HOH S 17 417 2 HOH HOH . J 5 HOH S 18 418 1 HOH HOH . J 5 HOH S 19 419 30 HOH HOH . J 5 HOH S 20 420 46 HOH HOH . J 5 HOH S 21 421 38 HOH HOH . K 5 HOH N 1 301 31 HOH HOH . K 5 HOH N 2 302 19 HOH HOH . K 5 HOH N 3 303 48 HOH HOH . K 5 HOH N 4 304 14 HOH HOH . K 5 HOH N 5 305 20 HOH HOH . K 5 HOH N 6 306 40 HOH HOH . K 5 HOH N 7 307 6 HOH HOH . K 5 HOH N 8 308 25 HOH HOH . K 5 HOH N 9 309 27 HOH HOH . K 5 HOH N 10 310 47 HOH HOH . K 5 HOH N 11 311 24 HOH HOH . K 5 HOH N 12 312 22 HOH HOH . K 5 HOH N 13 313 18 HOH HOH . K 5 HOH N 14 314 5 HOH HOH . K 5 HOH N 15 315 13 HOH HOH . K 5 HOH N 16 316 15 HOH HOH . K 5 HOH N 17 317 8 HOH HOH . K 5 HOH N 18 318 44 HOH HOH . K 5 HOH N 19 319 41 HOH HOH . K 5 HOH N 20 320 32 HOH HOH . K 5 HOH N 21 321 43 HOH HOH . K 5 HOH N 22 322 35 HOH HOH . K 5 HOH N 23 323 34 HOH HOH . K 5 HOH N 24 324 21 HOH HOH . K 5 HOH N 25 325 4 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -18.158 _atom_site.Cartn_y 11.299 _atom_site.Cartn_z 15.076 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 57.96 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id S _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #