data_8C5Q # _model_server_result.job_id SJfMRLzpwWl6BdqEig9tDA _model_server_result.datetime_utc '2024-11-24 18:21:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c5q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":409}' # _entry.id 8C5Q # _exptl.entry_id 8C5Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8C5Q _cell.length_a 127.521 _cell.length_b 127.521 _cell.length_c 125.065 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C5Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,K,L,V 1 1 B,M,N,O,P,Q,R,S,T,U,W 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 K N N ? 4 L N N ? 4 U N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8C5Q _atom_sites.fract_transf_matrix[1][1] 0.007842 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007842 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007996 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 401 401 SO4 SO4 . D 2 SO4 A 1 402 402 SO4 SO4 . E 2 SO4 A 1 403 403 SO4 SO4 . F 2 SO4 A 1 404 405 SO4 SO4 . G 2 SO4 A 1 405 1 SO4 SO4 . H 2 SO4 A 1 406 4 SO4 SO4 . I 3 TL0 A 1 407 1 TL0 668 . J 4 GOL A 1 408 1 GOL GOL . K 4 GOL A 1 409 4 GOL GOL . L 4 GOL A 1 410 5 GOL GOL . M 2 SO4 B 1 401 404 SO4 SO4 . N 2 SO4 B 1 402 407 SO4 SO4 . O 2 SO4 B 1 403 2 SO4 SO4 . P 2 SO4 B 1 404 3 SO4 SO4 . Q 2 SO4 B 1 405 5 SO4 SO4 . R 2 SO4 B 1 406 6 SO4 SO4 . S 3 TL0 B 1 407 2 TL0 668 . T 5 CL B 1 408 1 CL CL . U 4 GOL B 1 409 3 GOL GOL . V 6 HOH A 1 501 515 HOH HOH . V 6 HOH A 2 502 552 HOH HOH . V 6 HOH A 3 503 533 HOH HOH . V 6 HOH A 4 504 580 HOH HOH . V 6 HOH A 5 505 529 HOH HOH . V 6 HOH A 6 506 605 HOH HOH . V 6 HOH A 7 507 504 HOH HOH . V 6 HOH A 8 508 575 HOH HOH . V 6 HOH A 9 509 527 HOH HOH . V 6 HOH A 10 510 19 HOH HOH . V 6 HOH A 11 511 621 HOH HOH . V 6 HOH A 12 512 572 HOH HOH . V 6 HOH A 13 513 6 HOH HOH . V 6 HOH A 14 514 15 HOH HOH . V 6 HOH A 15 515 615 HOH HOH . V 6 HOH A 16 516 561 HOH HOH . V 6 HOH A 17 517 18 HOH HOH . V 6 HOH A 18 518 25 HOH HOH . V 6 HOH A 19 519 538 HOH HOH . V 6 HOH A 20 520 17 HOH HOH . V 6 HOH A 21 521 1 HOH HOH . V 6 HOH A 22 522 20 HOH HOH . V 6 HOH A 23 523 7 HOH HOH . V 6 HOH A 24 524 2 HOH HOH . V 6 HOH A 25 525 16 HOH HOH . V 6 HOH A 26 526 607 HOH HOH . W 6 HOH B 1 501 605 HOH HOH . W 6 HOH B 2 502 529 HOH HOH . W 6 HOH B 3 503 10 HOH HOH . W 6 HOH B 4 504 618 HOH HOH . W 6 HOH B 5 505 539 HOH HOH . W 6 HOH B 6 506 587 HOH HOH . W 6 HOH B 7 507 23 HOH HOH . W 6 HOH B 8 508 13 HOH HOH . W 6 HOH B 9 509 538 HOH HOH . W 6 HOH B 10 510 523 HOH HOH . W 6 HOH B 11 511 526 HOH HOH . W 6 HOH B 12 512 596 HOH HOH . W 6 HOH B 13 513 597 HOH HOH . W 6 HOH B 14 514 638 HOH HOH . W 6 HOH B 15 515 535 HOH HOH . W 6 HOH B 16 516 567 HOH HOH . W 6 HOH B 17 517 510 HOH HOH . W 6 HOH B 18 518 581 HOH HOH . W 6 HOH B 19 519 549 HOH HOH . W 6 HOH B 20 520 12 HOH HOH . W 6 HOH B 21 521 598 HOH HOH . W 6 HOH B 22 522 21 HOH HOH . W 6 HOH B 23 523 26 HOH HOH . W 6 HOH B 24 524 554 HOH HOH . W 6 HOH B 25 525 540 HOH HOH . W 6 HOH B 26 526 14 HOH HOH . W 6 HOH B 27 527 22 HOH HOH . W 6 HOH B 28 528 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . U 4 53.172 -5.53 -27.802 1 63.08 ? C1 GOL 409 B 1 HETATM 2 O O1 GOL . . . U 4 53.612 -5.108 -29.056 1 63.32 ? O1 GOL 409 B 1 HETATM 3 C C2 GOL . . . U 4 53.412 -7.023 -27.852 1 64.75 ? C2 GOL 409 B 1 HETATM 4 O O2 GOL . . . U 4 54.479 -7.287 -28.723 1 75.19 ? O2 GOL 409 B 1 HETATM 5 C C3 GOL . . . U 4 53.747 -7.467 -26.465 1 65.98 ? C3 GOL 409 B 1 HETATM 6 O O3 GOL . . . U 4 53.919 -8.834 -26.589 1 67.12 ? O3 GOL 409 B 1 HETATM 7 H H11 GOL . . . U 4 53.66 -5.13 -27.065 1 75.85 ? H11 GOL 409 B 1 HETATM 8 H H12 GOL . . . U 4 52.236 -5.34 -27.635 1 75.85 ? H12 GOL 409 B 1 HETATM 9 H HO1 GOL . . . U 4 52.923 -5.055 -29.543 1 76.13 ? HO1 GOL 409 B 1 HETATM 10 H H2 GOL . . . U 4 52.614 -7.483 -28.157 1 77.86 ? H2 GOL 409 B 1 HETATM 11 H HO2 GOL . . . U 4 55.198 -7.116 -28.305 1 90.38 ? HO2 GOL 409 B 1 HETATM 12 H H31 GOL . . . U 4 54.534 -6.997 -26.149 1 79.33 ? H31 GOL 409 B 1 HETATM 13 H H32 GOL . . . U 4 53.035 -7.213 -25.856 1 79.33 ? H32 GOL 409 B 1 HETATM 14 H HO3 GOL . . . U 4 54.756 -8.967 -26.526 1 80.69 ? HO3 GOL 409 B 1 # _model_server_stats.io_time_ms 116 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #