data_8C5X # _model_server_result.job_id RslEu7Kss9xBT8iHGfWaYg _model_server_result.datetime_utc '2024-11-14 16:44:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c5x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":307}' # _entry.id 8C5X # _exptl.entry_id 8C5X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8C5X _cell.length_a 139.85 _cell.length_b 139.85 _cell.length_c 186.56 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C5X _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 J N N ? 7 K N N ? 7 L N N ? 7 V N N ? 7 W N N ? 7 X N N ? 7 RA N N ? 7 SA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O MET 126 H MET 134 1_555 M K K . H K 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.749 ? metalc ? metalc2 A O ALA 129 H ALA 137 1_555 M K K . H K 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc3 A O PHE 132 H PHE 140 1_555 M K K . H K 310 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc4 M K K . H K 310 1_555 UA O HOH . H HOH 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.181 ? metalc ? metalc5 M K K . H K 310 1_555 WA O HOH . M HOH 524 6_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? metalc ? metalc6 B NE2 HIS 190 L HIS 190 1_555 EA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? metalc ? metalc7 B NE2 HIS 230 L HIS 230 1_555 EA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc8 C NE2 HIS 219 M HIS 219 1_555 EA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc9 C OE1 GLU 234 M GLU 234 1_555 EA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? metalc ? metalc10 C OE2 GLU 234 M GLU 234 1_555 EA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc11 C NE2 HIS 266 M HIS 266 1_555 EA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.345 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 646 n n C1 C2 EDO sing 647 n n C1 H11 EDO sing 648 n n C1 H12 EDO sing 649 n n O1 HO1 EDO sing 650 n n C2 O2 EDO sing 651 n n C2 H21 EDO sing 652 n n C2 H22 EDO sing 653 n n O2 HO2 EDO sing 654 n n # _atom_sites.entry_id 8C5X _atom_sites.fract_transf_matrix[1][1] 0.007151 _atom_sites.fract_transf_matrix[1][2] 0.004128 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008257 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00536 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 LDA H 1 301 702 LDA LDA . E 5 UNL H 1 302 801 UNL UNL . F 5 UNL H 1 303 802 UNL UNL . G 5 UNL H 1 304 803 UNL UNL . H 5 UNL H 1 305 804 UNL UNL . I 6 PO4 H 1 306 1 PO4 PO4 . J 7 EDO H 1 307 49 EDO EDO . K 7 EDO H 1 308 56 EDO EDO . L 7 EDO H 1 309 59 EDO EDO . M 8 K H 1 310 104 K K . N 9 BCL L 1 301 302 BCL BCL . O 9 BCL L 1 302 304 BCL BCL . P 10 BPH L 1 303 402 BPH BPH . Q 11 U10 L 1 304 502 U10 U10 . R 5 UNL L 1 305 805 UNL UNL . S 5 UNL L 1 306 807 UNL UNL . T 5 UNL L 1 307 808 UNL UNL . U 12 DIO L 1 308 40 DIO DIO . V 7 EDO L 1 309 48 EDO EDO . W 7 EDO L 1 310 50 EDO EDO . X 7 EDO L 1 311 58 EDO EDO . Y 13 HTO L 1 312 63 HTO HTO . Z 6 PO4 L 1 313 1 PO4 PO4 . AA 14 CDL M 1 401 900 CDL CDL . BA 9 BCL M 1 402 301 BCL BCL . CA 9 BCL M 1 403 303 BCL BCL . DA 10 BPH M 1 404 401 BPH BPH . EA 15 FE M 1 405 500 FE FE . FA 11 U10 M 1 406 501 U10 U10 . GA 16 SPN M 1 407 600 SPN SPN . HA 4 LDA M 1 408 701 LDA LDA . IA 4 LDA M 1 409 705 LDA LDA . JA 4 LDA M 1 410 708 LDA LDA . KA 4 LDA M 1 411 709 LDA LDA . LA 4 LDA M 1 412 710 LDA LDA . MA 5 UNL M 1 413 806 UNL UNL . NA 5 UNL M 1 414 809 UNL UNL . OA 5 UNL M 1 415 810 UNL UNL . PA 6 PO4 M 1 416 2 PO4 PO4 . QA 6 PO4 M 1 417 3 PO4 PO4 . RA 7 EDO M 1 418 51 EDO EDO . SA 7 EDO M 1 419 53 EDO EDO . TA 4 LDA M 1 420 1 LDA LDA . UA 17 HOH H 1 401 60 HOH HOH . UA 17 HOH H 2 402 48 HOH HOH . UA 17 HOH H 3 403 78 HOH HOH . UA 17 HOH H 4 404 79 HOH HOH . UA 17 HOH H 5 405 59 HOH HOH . UA 17 HOH H 6 406 42 HOH HOH . UA 17 HOH H 7 407 27 HOH HOH . UA 17 HOH H 8 408 56 HOH HOH . UA 17 HOH H 9 409 25 HOH HOH . UA 17 HOH H 10 410 50 HOH HOH . UA 17 HOH H 11 411 35 HOH HOH . UA 17 HOH H 12 412 96 HOH HOH . UA 17 HOH H 13 413 30 HOH HOH . UA 17 HOH H 14 414 45 HOH HOH . UA 17 HOH H 15 415 54 HOH HOH . UA 17 HOH H 16 416 36 HOH HOH . UA 17 HOH H 17 417 82 HOH HOH . UA 17 HOH H 18 418 99 HOH HOH . UA 17 HOH H 19 419 44 HOH HOH . UA 17 HOH H 20 420 5 HOH HOH . UA 17 HOH H 21 421 64 HOH HOH . UA 17 HOH H 22 422 65 HOH HOH . UA 17 HOH H 23 423 106 HOH HOH . UA 17 HOH H 24 424 98 HOH HOH . UA 17 HOH H 25 425 3 HOH HOH . UA 17 HOH H 26 426 8 HOH HOH . UA 17 HOH H 27 427 14 HOH HOH . UA 17 HOH H 28 428 47 HOH HOH . UA 17 HOH H 29 429 63 HOH HOH . UA 17 HOH H 30 430 86 HOH HOH . UA 17 HOH H 31 431 93 HOH HOH . UA 17 HOH H 32 432 77 HOH HOH . UA 17 HOH H 33 433 38 HOH HOH . UA 17 HOH H 34 434 105 HOH HOH . UA 17 HOH H 35 435 95 HOH HOH . UA 17 HOH H 36 436 66 HOH HOH . UA 17 HOH H 37 437 52 HOH HOH . UA 17 HOH H 38 438 75 HOH HOH . UA 17 HOH H 39 439 97 HOH HOH . UA 17 HOH H 40 440 87 HOH HOH . UA 17 HOH H 41 441 85 HOH HOH . UA 17 HOH H 42 442 94 HOH HOH . UA 17 HOH H 43 443 51 HOH HOH . VA 17 HOH L 1 401 70 HOH HOH . VA 17 HOH L 2 402 11 HOH HOH . VA 17 HOH L 3 403 18 HOH HOH . VA 17 HOH L 4 404 73 HOH HOH . VA 17 HOH L 5 405 16 HOH HOH . VA 17 HOH L 6 406 1 HOH HOH . VA 17 HOH L 7 407 2 HOH HOH . VA 17 HOH L 8 408 102 HOH HOH . VA 17 HOH L 9 409 22 HOH HOH . VA 17 HOH L 10 410 26 HOH HOH . VA 17 HOH L 11 411 9 HOH HOH . VA 17 HOH L 12 412 91 HOH HOH . VA 17 HOH L 13 413 31 HOH HOH . VA 17 HOH L 14 414 57 HOH HOH . VA 17 HOH L 15 415 19 HOH HOH . VA 17 HOH L 16 416 67 HOH HOH . VA 17 HOH L 17 417 103 HOH HOH . VA 17 HOH L 18 418 10 HOH HOH . VA 17 HOH L 19 419 43 HOH HOH . VA 17 HOH L 20 420 4 HOH HOH . VA 17 HOH L 21 421 40 HOH HOH . VA 17 HOH L 22 422 101 HOH HOH . WA 17 HOH M 1 501 23 HOH HOH . WA 17 HOH M 2 502 49 HOH HOH . WA 17 HOH M 3 503 6 HOH HOH . WA 17 HOH M 4 504 83 HOH HOH . WA 17 HOH M 5 505 55 HOH HOH . WA 17 HOH M 6 506 74 HOH HOH . WA 17 HOH M 7 507 88 HOH HOH . WA 17 HOH M 8 508 15 HOH HOH . WA 17 HOH M 9 509 12 HOH HOH . WA 17 HOH M 10 510 76 HOH HOH . WA 17 HOH M 11 511 34 HOH HOH . WA 17 HOH M 12 512 20 HOH HOH . WA 17 HOH M 13 513 68 HOH HOH . WA 17 HOH M 14 514 39 HOH HOH . WA 17 HOH M 15 515 17 HOH HOH . WA 17 HOH M 16 516 69 HOH HOH . WA 17 HOH M 17 517 13 HOH HOH . WA 17 HOH M 18 518 21 HOH HOH . WA 17 HOH M 19 519 90 HOH HOH . WA 17 HOH M 20 520 58 HOH HOH . WA 17 HOH M 21 521 29 HOH HOH . WA 17 HOH M 22 522 84 HOH HOH . WA 17 HOH M 23 523 92 HOH HOH . WA 17 HOH M 24 524 62 HOH HOH . WA 17 HOH M 25 525 28 HOH HOH . WA 17 HOH M 26 526 41 HOH HOH . WA 17 HOH M 27 527 80 HOH HOH . WA 17 HOH M 28 528 61 HOH HOH . WA 17 HOH M 29 529 33 HOH HOH . WA 17 HOH M 30 530 53 HOH HOH . WA 17 HOH M 31 531 89 HOH HOH . WA 17 HOH M 32 532 7 HOH HOH . WA 17 HOH M 33 533 81 HOH HOH . WA 17 HOH M 34 534 100 HOH HOH . WA 17 HOH M 35 535 104 HOH HOH . WA 17 HOH M 36 536 71 HOH HOH . WA 17 HOH M 37 537 24 HOH HOH . WA 17 HOH M 38 538 46 HOH HOH . WA 17 HOH M 39 539 32 HOH HOH . WA 17 HOH M 40 540 37 HOH HOH . WA 17 HOH M 41 541 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 7 -26.916 -69.255 16.851 1 67.84 ? C1 EDO 307 H 1 HETATM 2 O O1 EDO . . . J 7 -27.85 -68.886 15.811 1 61.46 ? O1 EDO 307 H 1 HETATM 3 C C2 EDO . . . J 7 -26.369 -70.669 16.625 1 74.84 ? C2 EDO 307 H 1 HETATM 4 O O2 EDO . . . J 7 -25.277 -70.914 17.526 1 73.82 ? O2 EDO 307 H 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 48 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #