data_8C6K # _model_server_result.job_id gSdqUHgG8N3maNWHomzWVQ _model_server_result.datetime_utc '2025-02-17 16:27:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c6k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"GA","auth_seq_id":407}' # _entry.id 8C6K # _exptl.entry_id 8C6K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 594.993 _entity.id 16 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SPEROIDENONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8C6K _cell.length_a 139.636 _cell.length_b 139.636 _cell.length_c 185.091 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C6K _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 16 _struct_asym.id GA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 53 L CYS 53 1_555 B SG CYS 64 L CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc1 A O MET 126 H MET 134 1_555 N K K . H K 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.025 ? metalc ? metalc2 A O ALA 129 H ALA 137 1_555 N K K . H K 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc3 A O PHE 132 H PHE 140 1_555 N K K . H K 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc4 B NE2 HIS 190 L HIS 190 1_555 EA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc5 B NE2 HIS 230 L HIS 230 1_555 EA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc6 C NE2 HIS 219 M HIS 219 1_555 EA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc7 C OE1 GLU 234 M GLU 234 1_555 EA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc8 C OE2 GLU 234 M GLU 234 1_555 EA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc9 C NE2 HIS 266 M HIS 266 1_555 EA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? # _chem_comp.formula 'C41 H70 O2' _chem_comp.formula_weight 594.993 _chem_comp.id SPN _chem_comp.mon_nstd_flag . _chem_comp.name SPEROIDENONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CMA O1 SPN sing 937 n n CMA HMA1 SPN sing 938 n n CMA HMA2 SPN sing 939 n n CMA HMA3 SPN sing 940 n n O1 C1 SPN sing 941 n n CM1 C1 SPN sing 942 n n CM1 HM11 SPN sing 943 n n CM1 HM12 SPN sing 944 n n CM1 HM13 SPN sing 945 n n CM2 C1 SPN sing 946 n n CM2 HM21 SPN sing 947 n n CM2 HM22 SPN sing 948 n n CM2 HM23 SPN sing 949 n n C1 C2 SPN sing 950 n n C2 O2 SPN doub 951 n n C2 C3 SPN sing 952 n n C3 C4 SPN sing 953 n n C3 H31 SPN sing 954 n n C3 H32 SPN sing 955 n n C4 C5 SPN doub 956 e n C4 H4 SPN sing 957 n n C5 CM3 SPN sing 958 n n C5 C6 SPN sing 959 n n CM3 HM31 SPN sing 960 n n CM3 HM32 SPN sing 961 n n CM3 HM33 SPN sing 962 n n C6 C7 SPN sing 963 n n C6 H61 SPN sing 964 n n C6 H62 SPN sing 965 n n C7 C8 SPN sing 966 n n C7 H71 SPN sing 967 n n C7 H72 SPN sing 968 n n C8 C9 SPN doub 969 e n C8 H8 SPN sing 970 n n C9 CM4 SPN sing 971 n n C9 C10 SPN sing 972 n n CM4 HM41 SPN sing 973 n n CM4 HM42 SPN sing 974 n n CM4 HM43 SPN sing 975 n n C10 C11 SPN sing 976 n n C10 H101 SPN sing 977 n n C10 H102 SPN sing 978 n n C11 C12 SPN sing 979 n n C11 H111 SPN sing 980 n n C11 H112 SPN sing 981 n n C12 C13 SPN doub 982 e n C12 H12 SPN sing 983 n n C13 CM5 SPN sing 984 n n C13 C14 SPN sing 985 n n CM5 HM51 SPN sing 986 n n CM5 HM52 SPN sing 987 n n CM5 HM53 SPN sing 988 n n C14 C15 SPN sing 989 n n C14 H141 SPN sing 990 n n C14 H142 SPN sing 991 n n C15 C16 SPN sing 992 n n C15 H151 SPN sing 993 n n C15 H152 SPN sing 994 n n C16 C17 SPN sing 995 n n C16 H161 SPN sing 996 n n C16 H162 SPN sing 997 n n C17 C18 SPN sing 998 n n C17 H171 SPN sing 999 n n C17 H172 SPN sing 1000 n n C18 CM6 SPN sing 1001 n n C18 C19 SPN doub 1002 e n CM6 HM61 SPN sing 1003 n n CM6 HM62 SPN sing 1004 n n CM6 HM63 SPN sing 1005 n n C19 C20 SPN sing 1006 n n C19 H19 SPN sing 1007 n n C20 C21 SPN sing 1008 n n C20 H201 SPN sing 1009 n n C20 H202 SPN sing 1010 n n C21 C22 SPN sing 1011 n n C21 H211 SPN sing 1012 n n C21 H212 SPN sing 1013 n n C22 CM7 SPN sing 1014 n n C22 C23 SPN sing 1015 n n C22 H22 SPN sing 1016 n n CM7 HM71 SPN sing 1017 n n CM7 HM72 SPN sing 1018 n n CM7 HM73 SPN sing 1019 n n C23 C24 SPN sing 1020 n n C23 H231 SPN sing 1021 n n C23 H232 SPN sing 1022 n n C24 C25 SPN sing 1023 n n C24 H241 SPN sing 1024 n n C24 H242 SPN sing 1025 n n C25 C26 SPN doub 1026 e n C25 H25 SPN sing 1027 n n C26 CM8 SPN sing 1028 n n C26 C27 SPN sing 1029 n n CM8 HM81 SPN sing 1030 n n CM8 HM82 SPN sing 1031 n n CM8 HM83 SPN sing 1032 n n C27 C28 SPN sing 1033 n n C27 H271 SPN sing 1034 n n C27 H272 SPN sing 1035 n n C28 C29 SPN sing 1036 n n C28 H281 SPN sing 1037 n n C28 H282 SPN sing 1038 n n C29 C30 SPN doub 1039 n n C29 H29 SPN sing 1040 n n C30 CM9 SPN sing 1041 n n C30 CMB SPN sing 1042 n n CM9 HM91 SPN sing 1043 n n CM9 HM92 SPN sing 1044 n n CM9 HM93 SPN sing 1045 n n CMB HMB1 SPN sing 1046 n n CMB HMB2 SPN sing 1047 n n CMB HMB3 SPN sing 1048 n n # _atom_sites.entry_id 8C6K _atom_sites.fract_transf_matrix[1][1] 0.007161 _atom_sites.fract_transf_matrix[1][2] 0.004135 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008269 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005403 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 LDA H 1 301 702 LDA LDA . E 5 UNL H 1 302 801 UNL UNL . F 5 UNL H 1 303 802 UNL UNL . G 5 UNL H 1 304 803 UNL UNL . H 5 UNL H 1 305 804 UNL UNL . I 6 PO4 H 1 306 1 PO4 PO4 . J 7 EDO H 1 307 51 EDO EDO . K 7 EDO H 1 308 52 EDO EDO . L 7 EDO H 1 309 56 EDO EDO . M 7 EDO H 1 310 59 EDO EDO . N 8 K H 1 311 104 K K . O 9 BCL L 1 301 302 BCL BCL . P 9 BCL L 1 302 304 BCL BCL . Q 10 BPH L 1 303 402 BPH BPH . R 11 U10 L 1 304 502 U10 U10 . S 5 UNL L 1 305 805 UNL UNL . T 5 UNL L 1 306 807 UNL UNL . U 5 UNL L 1 307 808 UNL UNL . V 5 UNL L 1 308 810 UNL UNL . W 12 DIO L 1 309 40 DIO DIO . X 7 EDO L 1 310 58 EDO EDO . Y 13 HTO L 1 311 61 HTO HTO . Z 13 HTO L 1 312 63 HTO HTO . AA 14 CDL M 1 401 900 CDL CDL . BA 9 BCL M 1 402 301 BCL BCL . CA 9 BCL M 1 403 303 BCL BCL . DA 10 BPH M 1 404 401 BPH BPH . EA 15 FE M 1 405 500 FE FE . FA 11 U10 M 1 406 501 U10 U10 . GA 16 SPN M 1 407 600 SPN SPN . HA 4 LDA M 1 408 701 LDA LDA . IA 4 LDA M 1 409 705 LDA LDA . JA 4 LDA M 1 410 708 LDA LDA . KA 4 LDA M 1 411 709 LDA LDA . LA 5 UNL M 1 412 806 UNL UNL . MA 5 UNL M 1 413 809 UNL UNL . NA 6 PO4 M 1 414 2 PO4 PO4 . OA 6 PO4 M 1 415 3 PO4 PO4 . PA 7 EDO M 1 416 50 EDO EDO . QA 7 EDO M 1 417 53 EDO EDO . RA 4 LDA M 1 418 1 LDA LDA . SA 17 HOH H 1 401 25 HOH HOH . SA 17 HOH H 2 402 22 HOH HOH . SA 17 HOH H 3 403 20 HOH HOH . SA 17 HOH H 4 404 7 HOH HOH . SA 17 HOH H 5 405 12 HOH HOH . SA 17 HOH H 6 406 21 HOH HOH . SA 17 HOH H 7 407 28 HOH HOH . SA 17 HOH H 8 408 23 HOH HOH . SA 17 HOH H 9 409 17 HOH HOH . SA 17 HOH H 10 410 2 HOH HOH . SA 17 HOH H 11 411 26 HOH HOH . TA 17 HOH L 1 401 27 HOH HOH . TA 17 HOH L 2 402 19 HOH HOH . TA 17 HOH L 3 403 16 HOH HOH . TA 17 HOH L 4 404 31 HOH HOH . TA 17 HOH L 5 405 5 HOH HOH . TA 17 HOH L 6 406 18 HOH HOH . TA 17 HOH L 7 407 11 HOH HOH . TA 17 HOH L 8 408 24 HOH HOH . TA 17 HOH L 9 409 6 HOH HOH . TA 17 HOH L 10 410 9 HOH HOH . TA 17 HOH L 11 411 10 HOH HOH . TA 17 HOH L 12 412 15 HOH HOH . UA 17 HOH M 1 501 3 HOH HOH . UA 17 HOH M 2 502 14 HOH HOH . UA 17 HOH M 3 503 13 HOH HOH . UA 17 HOH M 4 504 30 HOH HOH . UA 17 HOH M 5 505 29 HOH HOH . UA 17 HOH M 6 506 8 HOH HOH . UA 17 HOH M 7 507 1 HOH HOH . UA 17 HOH M 8 508 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CMA SPN . . . GA 16 27.22 37.141 55.155 1 9.02 ? CMA SPN 407 M 1 HETATM 2 O O1 SPN . . . GA 16 26.347 36.027 55.156 1 13.76 ? O1 SPN 407 M 1 HETATM 3 C CM1 SPN . . . GA 16 24.165 35.006 54.687 1 18.94 ? CM1 SPN 407 M 1 HETATM 4 C CM2 SPN . . . GA 16 24.626 37.355 53.983 1 2.46 ? CM2 SPN 407 M 1 HETATM 5 C C1 SPN . . . GA 16 25.255 35.982 54.234 1 17.94 ? C1 SPN 407 M 1 HETATM 6 C C2 SPN . . . GA 16 25.822 35.48 52.883 1 30.96 ? C2 SPN 407 M 1 HETATM 7 O O2 SPN . . . GA 16 25.246 35.655 51.826 1 19.55 ? O2 SPN 407 M 1 HETATM 8 C C3 SPN . . . GA 16 27.133 34.726 52.922 1 26.21 ? C3 SPN 407 M 1 HETATM 9 C C4 SPN . . . GA 16 27.472 34.092 51.626 1 25.93 ? C4 SPN 407 M 1 HETATM 10 C C5 SPN . . . GA 16 28.547 33.338 51.445 1 26.56 ? C5 SPN 407 M 1 HETATM 11 C CM3 SPN . . . GA 16 29.55 33.033 52.521 1 21.38 ? CM3 SPN 407 M 1 HETATM 12 C C6 SPN . . . GA 16 28.79 32.737 50.092 1 23.12 ? C6 SPN 407 M 1 HETATM 13 C C7 SPN . . . GA 16 30.257 32.66 49.629 1 24.08 ? C7 SPN 407 M 1 HETATM 14 C C8 SPN . . . GA 16 30.281 31.788 48.415 1 20.77 ? C8 SPN 407 M 1 HETATM 15 C C9 SPN . . . GA 16 31.113 30.82 48.048 1 10.89 ? C9 SPN 407 M 1 HETATM 16 C CM4 SPN . . . GA 16 32.31 30.385 48.822 1 14.47 ? CM4 SPN 407 M 1 HETATM 17 C C10 SPN . . . GA 16 30.872 30.083 46.76 1 12.31 ? C10 SPN 407 M 1 HETATM 18 C C11 SPN . . . GA 16 32.171 29.672 46.059 1 17.77 ? C11 SPN 407 M 1 HETATM 19 C C12 SPN . . . GA 16 31.923 29.124 44.692 1 11.81 ? C12 SPN 407 M 1 HETATM 20 C C13 SPN . . . GA 16 32.777 28.438 43.937 1 6.52 ? C13 SPN 407 M 1 HETATM 21 C CM5 SPN . . . GA 16 34.163 28.105 44.403 1 5.16 ? CM5 SPN 407 M 1 HETATM 22 C C14 SPN . . . GA 16 32.388 27.945 42.558 1 5.29 ? C14 SPN 407 M 1 HETATM 23 C C15 SPN . . . GA 16 32.93 26.538 42.313 1 7.33 ? C15 SPN 407 M 1 HETATM 24 C C16 SPN . . . GA 16 32.637 25.905 40.969 1 6.34 ? C16 SPN 407 M 1 HETATM 25 C C17 SPN . . . GA 16 31.181 25.519 40.849 1 9.96 ? C17 SPN 407 M 1 HETATM 26 C C18 SPN . . . GA 16 30.77 24.761 39.614 1 12.01 ? C18 SPN 407 M 1 HETATM 27 C CM6 SPN . . . GA 16 31.816 24.17 38.726 1 6.04 ? CM6 SPN 407 M 1 HETATM 28 C C19 SPN . . . GA 16 29.468 24.662 39.413 1 12.8 ? C19 SPN 407 M 1 HETATM 29 C C20 SPN . . . GA 16 28.704 24.021 38.337 1 3.18 ? C20 SPN 407 M 1 HETATM 30 C C21 SPN . . . GA 16 27.255 24.438 38.493 1 2.77 ? C21 SPN 407 M 1 HETATM 31 C C22 SPN . . . GA 16 26.446 23.562 37.557 1 10.43 ? C22 SPN 407 M 1 HETATM 32 C CM7 SPN . . . GA 16 26.866 23.83 36.12 1 13.71 ? CM7 SPN 407 M 1 HETATM 33 C C23 SPN . . . GA 16 24.934 23.648 37.775 1 14.46 ? C23 SPN 407 M 1 HETATM 34 C C24 SPN . . . GA 16 24.281 22.34 37.334 1 15.19 ? C24 SPN 407 M 1 HETATM 35 C C25 SPN . . . GA 16 22.914 22.131 37.898 1 18.27 ? C25 SPN 407 M 1 HETATM 36 C C26 SPN . . . GA 16 22.592 21.239 38.819 1 16.46 ? C26 SPN 407 M 1 HETATM 37 C CM8 SPN . . . GA 16 23.586 20.305 39.439 1 24.23 ? CM8 SPN 407 M 1 HETATM 38 C C27 SPN . . . GA 16 21.182 21.116 39.3 1 19.12 ? C27 SPN 407 M 1 HETATM 39 C C28 SPN . . . GA 16 20.433 19.998 38.566 1 19.19 ? C28 SPN 407 M 1 HETATM 40 C C29 SPN . . . GA 16 19.026 20.381 38.219 1 44.86 ? C29 SPN 407 M 1 HETATM 41 C C30 SPN . . . GA 16 18.548 21.018 37.132 1 56.41 ? C30 SPN 407 M 1 HETATM 42 C CM9 SPN . . . GA 16 19.414 21.51 35.986 1 15.95 ? CM9 SPN 407 M 1 HETATM 43 C CMB SPN . . . GA 16 17.089 21.312 36.952 1 47.01 ? CMB SPN 407 M 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #