data_8C6K # _model_server_result.job_id W0GUjkhL_cpcLnscsS_f-Q _model_server_result.datetime_utc '2024-11-24 06:10:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c6k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"PA","auth_seq_id":416}' # _entry.id 8C6K # _exptl.entry_id 8C6K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8C6K _cell.length_a 139.636 _cell.length_b 139.636 _cell.length_c 185.091 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C6K _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 J N N ? 7 K N N ? 7 L N N ? 7 M N N ? 7 X N N ? 7 PA N N ? 7 QA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 53 L CYS 53 1_555 B SG CYS 64 L CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? metalc ? metalc1 A O MET 126 H MET 134 1_555 N K K . H K 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.025 ? metalc ? metalc2 A O ALA 129 H ALA 137 1_555 N K K . H K 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc3 A O PHE 132 H PHE 140 1_555 N K K . H K 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc4 B NE2 HIS 190 L HIS 190 1_555 EA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc5 B NE2 HIS 230 L HIS 230 1_555 EA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc6 C NE2 HIS 219 M HIS 219 1_555 EA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? metalc ? metalc7 C OE1 GLU 234 M GLU 234 1_555 EA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? metalc ? metalc8 C OE2 GLU 234 M GLU 234 1_555 EA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? metalc ? metalc9 C NE2 HIS 266 M HIS 266 1_555 EA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 646 n n C1 C2 EDO sing 647 n n C1 H11 EDO sing 648 n n C1 H12 EDO sing 649 n n O1 HO1 EDO sing 650 n n C2 O2 EDO sing 651 n n C2 H21 EDO sing 652 n n C2 H22 EDO sing 653 n n O2 HO2 EDO sing 654 n n # _atom_sites.entry_id 8C6K _atom_sites.fract_transf_matrix[1][1] 0.007161 _atom_sites.fract_transf_matrix[1][2] 0.004135 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008269 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005403 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 LDA H 1 301 702 LDA LDA . E 5 UNL H 1 302 801 UNL UNL . F 5 UNL H 1 303 802 UNL UNL . G 5 UNL H 1 304 803 UNL UNL . H 5 UNL H 1 305 804 UNL UNL . I 6 PO4 H 1 306 1 PO4 PO4 . J 7 EDO H 1 307 51 EDO EDO . K 7 EDO H 1 308 52 EDO EDO . L 7 EDO H 1 309 56 EDO EDO . M 7 EDO H 1 310 59 EDO EDO . N 8 K H 1 311 104 K K . O 9 BCL L 1 301 302 BCL BCL . P 9 BCL L 1 302 304 BCL BCL . Q 10 BPH L 1 303 402 BPH BPH . R 11 U10 L 1 304 502 U10 U10 . S 5 UNL L 1 305 805 UNL UNL . T 5 UNL L 1 306 807 UNL UNL . U 5 UNL L 1 307 808 UNL UNL . V 5 UNL L 1 308 810 UNL UNL . W 12 DIO L 1 309 40 DIO DIO . X 7 EDO L 1 310 58 EDO EDO . Y 13 HTO L 1 311 61 HTO HTO . Z 13 HTO L 1 312 63 HTO HTO . AA 14 CDL M 1 401 900 CDL CDL . BA 9 BCL M 1 402 301 BCL BCL . CA 9 BCL M 1 403 303 BCL BCL . DA 10 BPH M 1 404 401 BPH BPH . EA 15 FE M 1 405 500 FE FE . FA 11 U10 M 1 406 501 U10 U10 . GA 16 SPN M 1 407 600 SPN SPN . HA 4 LDA M 1 408 701 LDA LDA . IA 4 LDA M 1 409 705 LDA LDA . JA 4 LDA M 1 410 708 LDA LDA . KA 4 LDA M 1 411 709 LDA LDA . LA 5 UNL M 1 412 806 UNL UNL . MA 5 UNL M 1 413 809 UNL UNL . NA 6 PO4 M 1 414 2 PO4 PO4 . OA 6 PO4 M 1 415 3 PO4 PO4 . PA 7 EDO M 1 416 50 EDO EDO . QA 7 EDO M 1 417 53 EDO EDO . RA 4 LDA M 1 418 1 LDA LDA . SA 17 HOH H 1 401 25 HOH HOH . SA 17 HOH H 2 402 22 HOH HOH . SA 17 HOH H 3 403 20 HOH HOH . SA 17 HOH H 4 404 7 HOH HOH . SA 17 HOH H 5 405 12 HOH HOH . SA 17 HOH H 6 406 21 HOH HOH . SA 17 HOH H 7 407 28 HOH HOH . SA 17 HOH H 8 408 23 HOH HOH . SA 17 HOH H 9 409 17 HOH HOH . SA 17 HOH H 10 410 2 HOH HOH . SA 17 HOH H 11 411 26 HOH HOH . TA 17 HOH L 1 401 27 HOH HOH . TA 17 HOH L 2 402 19 HOH HOH . TA 17 HOH L 3 403 16 HOH HOH . TA 17 HOH L 4 404 31 HOH HOH . TA 17 HOH L 5 405 5 HOH HOH . TA 17 HOH L 6 406 18 HOH HOH . TA 17 HOH L 7 407 11 HOH HOH . TA 17 HOH L 8 408 24 HOH HOH . TA 17 HOH L 9 409 6 HOH HOH . TA 17 HOH L 10 410 9 HOH HOH . TA 17 HOH L 11 411 10 HOH HOH . TA 17 HOH L 12 412 15 HOH HOH . UA 17 HOH M 1 501 3 HOH HOH . UA 17 HOH M 2 502 14 HOH HOH . UA 17 HOH M 3 503 13 HOH HOH . UA 17 HOH M 4 504 30 HOH HOH . UA 17 HOH M 5 505 29 HOH HOH . UA 17 HOH M 6 506 8 HOH HOH . UA 17 HOH M 7 507 1 HOH HOH . UA 17 HOH M 8 508 4 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . PA 7 59.409 57.896 22.552 1 19.47 ? C1 EDO 416 M 1 HETATM 2 O O1 EDO . . . PA 7 58.918 57.973 21.207 1 23.84 ? O1 EDO 416 M 1 HETATM 3 C C2 EDO . . . PA 7 58.241 58.144 23.501 1 27.89 ? C2 EDO 416 M 1 HETATM 4 O O2 EDO . . . PA 7 58.424 59.379 24.211 1 36.98 ? O2 EDO 416 M 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #