data_8C6K
#
_model_server_result.job_id            diGWL0KOYgy1Ic1S-oilSQ 
_model_server_result.datetime_utc      '2024-11-13 06:54:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8c6k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"PA","auth_seq_id":416}' 
#
_entry.id    8C6K 
#
_exptl.entry_id    8C6K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8C6K 
_cell.length_a            139.636 
_cell.length_b            139.636 
_cell.length_c            185.091 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8C6K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    'P 31 2"' 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 J N N 
? 7 K N N 
? 7 L N N 
? 7 M N N 
? 7 X N N 
? 7 PA N N 
? 7 QA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 53 L CYS 53 1_555 B SG CYS 64 L CYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? 
metalc ? metalc1 A O MET 126 H MET 134 1_555 N K K . H K 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.025 ? 
metalc ? metalc2 A O ALA 129 H ALA 137 1_555 N K K . H K 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? 
metalc ? metalc3 A O PHE 132 H PHE 140 1_555 N K K . H K 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? 
metalc ? metalc4 B NE2 HIS 190 L HIS 190 1_555 EA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? 
metalc ? metalc5 B NE2 HIS 230 L HIS 230 1_555 EA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? 
metalc ? metalc6 C NE2 HIS 219 M HIS 219 1_555 EA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? 
metalc ? metalc7 C OE1 GLU 234 M GLU 234 1_555 EA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? 
metalc ? metalc8 C OE2 GLU 234 M GLU 234 1_555 EA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
metalc ? metalc9 C NE2 HIS 266 M HIS 266 1_555 EA FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.588 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 646 n n 
C1 C2 EDO sing 647 n n 
C1 H11 EDO sing 648 n n 
C1 H12 EDO sing 649 n n 
O1 HO1 EDO sing 650 n n 
C2 O2 EDO sing 651 n n 
C2 H21 EDO sing 652 n n 
C2 H22 EDO sing 653 n n 
O2 HO2 EDO sing 654 n n 
#
_atom_sites.entry_id                     8C6K 
_atom_sites.fract_transf_matrix[1][1]    0.007161 
_atom_sites.fract_transf_matrix[1][2]    0.004135 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008269 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005403 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 LDA H 1 301 702 LDA LDA . 
E 5 UNL H 1 302 801 UNL UNL . 
F 5 UNL H 1 303 802 UNL UNL . 
G 5 UNL H 1 304 803 UNL UNL . 
H 5 UNL H 1 305 804 UNL UNL . 
I 6 PO4 H 1 306 1 PO4 PO4 . 
J 7 EDO H 1 307 51 EDO EDO . 
K 7 EDO H 1 308 52 EDO EDO . 
L 7 EDO H 1 309 56 EDO EDO . 
M 7 EDO H 1 310 59 EDO EDO . 
N 8 K H 1 311 104 K K . 
O 9 BCL L 1 301 302 BCL BCL . 
P 9 BCL L 1 302 304 BCL BCL . 
Q 10 BPH L 1 303 402 BPH BPH . 
R 11 U10 L 1 304 502 U10 U10 . 
S 5 UNL L 1 305 805 UNL UNL . 
T 5 UNL L 1 306 807 UNL UNL . 
U 5 UNL L 1 307 808 UNL UNL . 
V 5 UNL L 1 308 810 UNL UNL . 
W 12 DIO L 1 309 40 DIO DIO . 
X 7 EDO L 1 310 58 EDO EDO . 
Y 13 HTO L 1 311 61 HTO HTO . 
Z 13 HTO L 1 312 63 HTO HTO . 
AA 14 CDL M 1 401 900 CDL CDL . 
BA 9 BCL M 1 402 301 BCL BCL . 
CA 9 BCL M 1 403 303 BCL BCL . 
DA 10 BPH M 1 404 401 BPH BPH . 
EA 15 FE M 1 405 500 FE FE . 
FA 11 U10 M 1 406 501 U10 U10 . 
GA 16 SPN M 1 407 600 SPN SPN . 
HA 4 LDA M 1 408 701 LDA LDA . 
IA 4 LDA M 1 409 705 LDA LDA . 
JA 4 LDA M 1 410 708 LDA LDA . 
KA 4 LDA M 1 411 709 LDA LDA . 
LA 5 UNL M 1 412 806 UNL UNL . 
MA 5 UNL M 1 413 809 UNL UNL . 
NA 6 PO4 M 1 414 2 PO4 PO4 . 
OA 6 PO4 M 1 415 3 PO4 PO4 . 
PA 7 EDO M 1 416 50 EDO EDO . 
QA 7 EDO M 1 417 53 EDO EDO . 
RA 4 LDA M 1 418 1 LDA LDA . 
SA 17 HOH H 1 401 25 HOH HOH . 
SA 17 HOH H 2 402 22 HOH HOH . 
SA 17 HOH H 3 403 20 HOH HOH . 
SA 17 HOH H 4 404 7 HOH HOH . 
SA 17 HOH H 5 405 12 HOH HOH . 
SA 17 HOH H 6 406 21 HOH HOH . 
SA 17 HOH H 7 407 28 HOH HOH . 
SA 17 HOH H 8 408 23 HOH HOH . 
SA 17 HOH H 9 409 17 HOH HOH . 
SA 17 HOH H 10 410 2 HOH HOH . 
SA 17 HOH H 11 411 26 HOH HOH . 
TA 17 HOH L 1 401 27 HOH HOH . 
TA 17 HOH L 2 402 19 HOH HOH . 
TA 17 HOH L 3 403 16 HOH HOH . 
TA 17 HOH L 4 404 31 HOH HOH . 
TA 17 HOH L 5 405 5 HOH HOH . 
TA 17 HOH L 6 406 18 HOH HOH . 
TA 17 HOH L 7 407 11 HOH HOH . 
TA 17 HOH L 8 408 24 HOH HOH . 
TA 17 HOH L 9 409 6 HOH HOH . 
TA 17 HOH L 10 410 9 HOH HOH . 
TA 17 HOH L 11 411 10 HOH HOH . 
TA 17 HOH L 12 412 15 HOH HOH . 
UA 17 HOH M 1 501 3 HOH HOH . 
UA 17 HOH M 2 502 14 HOH HOH . 
UA 17 HOH M 3 503 13 HOH HOH . 
UA 17 HOH M 4 504 30 HOH HOH . 
UA 17 HOH M 5 505 29 HOH HOH . 
UA 17 HOH M 6 506 8 HOH HOH . 
UA 17 HOH M 7 507 1 HOH HOH . 
UA 17 HOH M 8 508 4 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . PA 7 59.409 57.896 22.552 1 19.47 ? C1 EDO 416 M 1 
HETATM 2 O O1 EDO . . . PA 7 58.918 57.973 21.207 1 23.84 ? O1 EDO 416 M 1 
HETATM 3 C C2 EDO . . . PA 7 58.241 58.144 23.501 1 27.89 ? C2 EDO 416 M 1 
HETATM 4 O O2 EDO . . . PA 7 58.424 59.379 24.211 1 36.98 ? O2 EDO 416 M 1 
#
_model_server_stats.io_time_ms              25 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#