data_8C7C # _model_server_result.job_id 3EMjUVecDt_p9Qu4fU8yxQ _model_server_result.datetime_utc '2024-11-30 20:09:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c7c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":304}' # _entry.id 8C7C # _exptl.entry_id 8C7C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.58 _cell.angle_gamma 90 _cell.entry_id 8C7C _cell.length_a 253.13 _cell.length_b 75.98 _cell.length_c 65.85 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C7C _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N ? 6 P N N ? 6 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 278 L CYS 278 1_555 C SG CYS 84 M CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 B NE2 HIS 190 L HIS 190 1_555 W FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc2 B NE2 HIS 230 L HIS 230 1_555 W FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc3 C NE2 HIS 219 M HIS 219 1_555 W FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc4 C OE1 GLU 234 M GLU 234 1_555 W FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc5 C OE2 GLU 234 M GLU 234 1_555 W FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc6 C NE2 HIS 266 M HIS 266 1_555 W FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 632 n n C1 C2 EDO sing 633 n n C1 H11 EDO sing 634 n n C1 H12 EDO sing 635 n n O1 HO1 EDO sing 636 n n C2 O2 EDO sing 637 n n C2 H21 EDO sing 638 n n C2 H22 EDO sing 639 n n O2 HO2 EDO sing 640 n n # _atom_sites.entry_id 8C7C _atom_sites.fract_transf_matrix[1][1] 0.003951 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000386 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013161 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015258 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 LDA H 1 301 702 LDA LDA . E 5 UNL H 1 302 803 UNL UNL . F 5 UNL H 1 303 804 UNL UNL . G 6 EDO H 1 304 51 EDO EDO . H 6 EDO H 1 305 59 EDO EDO . I 7 BCL L 1 301 302 BCL BCL . J 7 BCL L 1 302 304 BCL BCL . K 8 BPH L 1 303 402 BPH BPH . L 4 LDA L 1 304 708 LDA LDA . M 5 UNL L 1 305 805 UNL UNL . N 5 UNL L 1 306 807 UNL UNL . O 5 UNL L 1 307 808 UNL UNL . P 6 EDO L 1 308 48 EDO EDO . Q 6 EDO L 1 309 50 EDO EDO . R 9 HTO L 1 310 63 HTO HTO . S 10 CDL M 1 401 900 CDL CDL . T 7 BCL M 1 402 301 BCL BCL . U 7 BCL M 1 403 303 BCL BCL . V 8 BPH M 1 404 401 BPH BPH . W 11 FE M 1 405 500 FE FE . X 12 U10 M 1 406 501 U10 U10 . Y 13 SPN M 1 407 600 SPN SPN . Z 4 LDA M 1 408 701 LDA LDA . AA 4 LDA M 1 409 705 LDA LDA . BA 5 UNL M 1 410 806 UNL UNL . CA 5 UNL M 1 411 809 UNL UNL . DA 5 UNL M 1 412 810 UNL UNL . EA 4 LDA M 1 413 1 LDA LDA . FA 14 HOH H 1 401 15 HOH HOH . FA 14 HOH H 2 402 1 HOH HOH . FA 14 HOH H 3 403 13 HOH HOH . FA 14 HOH H 4 404 16 HOH HOH . FA 14 HOH H 5 405 9 HOH HOH . FA 14 HOH H 6 406 6 HOH HOH . FA 14 HOH H 7 407 19 HOH HOH . GA 14 HOH L 1 401 10 HOH HOH . GA 14 HOH L 2 402 3 HOH HOH . GA 14 HOH L 3 403 18 HOH HOH . GA 14 HOH L 4 404 12 HOH HOH . GA 14 HOH L 5 405 5 HOH HOH . GA 14 HOH L 6 406 8 HOH HOH . GA 14 HOH L 7 407 20 HOH HOH . HA 14 HOH M 1 501 14 HOH HOH . HA 14 HOH M 2 502 7 HOH HOH . HA 14 HOH M 3 503 17 HOH HOH . HA 14 HOH M 4 504 4 HOH HOH . HA 14 HOH M 5 505 11 HOH HOH . HA 14 HOH M 6 506 2 HOH HOH . HA 14 HOH M 7 507 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 6 54.31 18.631 13.214 1 73.32 ? C1 EDO 304 H 1 HETATM 2 O O1 EDO . . . G 6 53.925 17.293 13.615 1 83.54 ? O1 EDO 304 H 1 HETATM 3 C C2 EDO . . . G 6 53.911 18.883 11.763 1 75.2 ? C2 EDO 304 H 1 HETATM 4 O O2 EDO . . . G 6 54.604 18 10.857 1 71.55 ? O2 EDO 304 H 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 51 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 1115 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #