data_8C7C # _model_server_result.job_id 6YrZFqRwLl2nywUnKJOXwg _model_server_result.datetime_utc '2024-10-13 03:20:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c7c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":406}' # _entry.id 8C7C # _exptl.entry_id 8C7C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 863.343 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UBIQUINONE-10 _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.58 _cell.angle_gamma 90 _cell.entry_id 8C7C _cell.length_a 253.13 _cell.length_b 75.98 _cell.length_c 65.85 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C7C _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 12 _struct_asym.id X _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 278 L CYS 278 1_555 C SG CYS 84 M CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 B NE2 HIS 190 L HIS 190 1_555 W FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc2 B NE2 HIS 230 L HIS 230 1_555 W FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc3 C NE2 HIS 219 M HIS 219 1_555 W FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc4 C OE1 GLU 234 M GLU 234 1_555 W FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc5 C OE2 GLU 234 M GLU 234 1_555 W FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc6 C NE2 HIS 266 M HIS 266 1_555 W FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? # _chem_comp.formula 'C59 H90 O4' _chem_comp.formula_weight 863.343 _chem_comp.id U10 _chem_comp.mon_nstd_flag . _chem_comp.name UBIQUINONE-10 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Coenzyme Q10' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 U10 sing 1099 n n C1 C6 U10 doub 1100 n n C1 C1M U10 sing 1101 n n C2 C3 U10 sing 1102 n n C2 O2 U10 doub 1103 n n C3 C4 U10 doub 1104 n n C3 O3 U10 sing 1105 n n C4 C5 U10 sing 1106 n n C4 O4 U10 sing 1107 n n C5 C6 U10 sing 1108 n n C5 O5 U10 doub 1109 n n C6 C7 U10 sing 1110 n n C1M H1M1 U10 sing 1111 n n C1M H1M2 U10 sing 1112 n n C1M H1M3 U10 sing 1113 n n C3M O3 U10 sing 1114 n n C3M H3M1 U10 sing 1115 n n C3M H3M2 U10 sing 1116 n n C3M H3M3 U10 sing 1117 n n C4M O4 U10 sing 1118 n n C4M H4M1 U10 sing 1119 n n C4M H4M2 U10 sing 1120 n n C4M H4M3 U10 sing 1121 n n C7 C8 U10 sing 1122 n n C7 H71 U10 sing 1123 n n C7 H72 U10 sing 1124 n n C8 C9 U10 doub 1125 e n C8 H8 U10 sing 1126 n n C9 C10 U10 sing 1127 n n C9 C11 U10 sing 1128 n n C10 H101 U10 sing 1129 n n C10 H102 U10 sing 1130 n n C10 H103 U10 sing 1131 n n C11 C12 U10 sing 1132 n n C11 H111 U10 sing 1133 n n C11 H112 U10 sing 1134 n n C12 C13 U10 sing 1135 n n C12 H121 U10 sing 1136 n n C12 H122 U10 sing 1137 n n C13 C14 U10 doub 1138 e n C13 H13 U10 sing 1139 n n C14 C15 U10 sing 1140 n n C14 C16 U10 sing 1141 n n C15 H151 U10 sing 1142 n n C15 H152 U10 sing 1143 n n C15 H153 U10 sing 1144 n n C16 C17 U10 sing 1145 n n C16 H161 U10 sing 1146 n n C16 H162 U10 sing 1147 n n C17 C18 U10 sing 1148 n n C17 H171 U10 sing 1149 n n C17 H172 U10 sing 1150 n n C18 C19 U10 doub 1151 e n C18 H18 U10 sing 1152 n n C19 C20 U10 sing 1153 n n C19 C21 U10 sing 1154 n n C20 H201 U10 sing 1155 n n C20 H202 U10 sing 1156 n n C20 H203 U10 sing 1157 n n C21 C22 U10 sing 1158 n n C21 H211 U10 sing 1159 n n C21 H212 U10 sing 1160 n n C22 C23 U10 sing 1161 n n C22 H221 U10 sing 1162 n n C22 H222 U10 sing 1163 n n C23 C24 U10 doub 1164 e n C23 H23 U10 sing 1165 n n C24 C25 U10 sing 1166 n n C24 C26 U10 sing 1167 n n C25 H251 U10 sing 1168 n n C25 H252 U10 sing 1169 n n C25 H253 U10 sing 1170 n n C26 C27 U10 sing 1171 n n C26 H261 U10 sing 1172 n n C26 H262 U10 sing 1173 n n C27 C28 U10 sing 1174 n n C27 H271 U10 sing 1175 n n C27 H272 U10 sing 1176 n n C28 C29 U10 doub 1177 e n C28 H28 U10 sing 1178 n n C29 C30 U10 sing 1179 n n C29 C31 U10 sing 1180 n n C30 H301 U10 sing 1181 n n C30 H302 U10 sing 1182 n n C30 H303 U10 sing 1183 n n C31 C32 U10 sing 1184 n n C31 H311 U10 sing 1185 n n C31 H312 U10 sing 1186 n n C32 C33 U10 sing 1187 n n C32 H321 U10 sing 1188 n n C32 H322 U10 sing 1189 n n C33 C34 U10 doub 1190 e n C33 H33 U10 sing 1191 n n C34 C35 U10 sing 1192 n n C34 C36 U10 sing 1193 n n C35 H351 U10 sing 1194 n n C35 H352 U10 sing 1195 n n C35 H353 U10 sing 1196 n n C36 C37 U10 sing 1197 n n C36 H361 U10 sing 1198 n n C36 H362 U10 sing 1199 n n C37 C38 U10 sing 1200 n n C37 H371 U10 sing 1201 n n C37 H372 U10 sing 1202 n n C38 C39 U10 doub 1203 e n C38 H38 U10 sing 1204 n n C39 C40 U10 sing 1205 n n C39 C41 U10 sing 1206 n n C40 H401 U10 sing 1207 n n C40 H402 U10 sing 1208 n n C40 H403 U10 sing 1209 n n C41 C42 U10 sing 1210 n n C41 H411 U10 sing 1211 n n C41 H412 U10 sing 1212 n n C42 C43 U10 sing 1213 n n C42 H421 U10 sing 1214 n n C42 H422 U10 sing 1215 n n C43 C44 U10 doub 1216 e n C43 H43 U10 sing 1217 n n C44 C45 U10 sing 1218 n n C44 C46 U10 sing 1219 n n C45 H451 U10 sing 1220 n n C45 H452 U10 sing 1221 n n C45 H453 U10 sing 1222 n n C46 C47 U10 sing 1223 n n C46 H461 U10 sing 1224 n n C46 H462 U10 sing 1225 n n C47 C48 U10 sing 1226 n n C47 H471 U10 sing 1227 n n C47 H472 U10 sing 1228 n n C48 C49 U10 doub 1229 e n C48 H48 U10 sing 1230 n n C49 C50 U10 sing 1231 n n C49 C51 U10 sing 1232 n n C50 H501 U10 sing 1233 n n C50 H502 U10 sing 1234 n n C50 H503 U10 sing 1235 n n C51 C52 U10 sing 1236 n n C51 H511 U10 sing 1237 n n C51 H512 U10 sing 1238 n n C52 C53 U10 sing 1239 n n C52 H521 U10 sing 1240 n n C52 H522 U10 sing 1241 n n C53 C54 U10 doub 1242 n n C53 H53 U10 sing 1243 n n C54 C55 U10 sing 1244 n n C54 C56 U10 sing 1245 n n C55 H551 U10 sing 1246 n n C55 H552 U10 sing 1247 n n C55 H553 U10 sing 1248 n n C56 H561 U10 sing 1249 n n C56 H562 U10 sing 1250 n n C56 H563 U10 sing 1251 n n # _atom_sites.entry_id 8C7C _atom_sites.fract_transf_matrix[1][1] 0.003951 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000386 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013161 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015258 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 LDA H 1 301 702 LDA LDA . E 5 UNL H 1 302 803 UNL UNL . F 5 UNL H 1 303 804 UNL UNL . G 6 EDO H 1 304 51 EDO EDO . H 6 EDO H 1 305 59 EDO EDO . I 7 BCL L 1 301 302 BCL BCL . J 7 BCL L 1 302 304 BCL BCL . K 8 BPH L 1 303 402 BPH BPH . L 4 LDA L 1 304 708 LDA LDA . M 5 UNL L 1 305 805 UNL UNL . N 5 UNL L 1 306 807 UNL UNL . O 5 UNL L 1 307 808 UNL UNL . P 6 EDO L 1 308 48 EDO EDO . Q 6 EDO L 1 309 50 EDO EDO . R 9 HTO L 1 310 63 HTO HTO . S 10 CDL M 1 401 900 CDL CDL . T 7 BCL M 1 402 301 BCL BCL . U 7 BCL M 1 403 303 BCL BCL . V 8 BPH M 1 404 401 BPH BPH . W 11 FE M 1 405 500 FE FE . X 12 U10 M 1 406 501 U10 U10 . Y 13 SPN M 1 407 600 SPN SPN . Z 4 LDA M 1 408 701 LDA LDA . AA 4 LDA M 1 409 705 LDA LDA . BA 5 UNL M 1 410 806 UNL UNL . CA 5 UNL M 1 411 809 UNL UNL . DA 5 UNL M 1 412 810 UNL UNL . EA 4 LDA M 1 413 1 LDA LDA . FA 14 HOH H 1 401 15 HOH HOH . FA 14 HOH H 2 402 1 HOH HOH . FA 14 HOH H 3 403 13 HOH HOH . FA 14 HOH H 4 404 16 HOH HOH . FA 14 HOH H 5 405 9 HOH HOH . FA 14 HOH H 6 406 6 HOH HOH . FA 14 HOH H 7 407 19 HOH HOH . GA 14 HOH L 1 401 10 HOH HOH . GA 14 HOH L 2 402 3 HOH HOH . GA 14 HOH L 3 403 18 HOH HOH . GA 14 HOH L 4 404 12 HOH HOH . GA 14 HOH L 5 405 5 HOH HOH . GA 14 HOH L 6 406 8 HOH HOH . GA 14 HOH L 7 407 20 HOH HOH . HA 14 HOH M 1 501 14 HOH HOH . HA 14 HOH M 2 502 7 HOH HOH . HA 14 HOH M 3 503 17 HOH HOH . HA 14 HOH M 4 504 4 HOH HOH . HA 14 HOH M 5 505 11 HOH HOH . HA 14 HOH M 6 506 2 HOH HOH . HA 14 HOH M 7 507 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 U10 . . . X 12 40.735 7.354 4.338 1 58.05 ? C1 U10 406 M 1 HETATM 2 C C2 U10 . . . X 12 41.893 8.115 4.466 1 58.75 ? C2 U10 406 M 1 HETATM 3 C C3 U10 . . . X 12 43.172 7.517 4.486 1 70.72 ? C3 U10 406 M 1 HETATM 4 C C4 U10 . . . X 12 43.273 6.114 4.383 1 68.68 ? C4 U10 406 M 1 HETATM 5 C C5 U10 . . . X 12 42.079 5.351 4.287 1 63.17 ? C5 U10 406 M 1 HETATM 6 C C6 U10 . . . X 12 40.822 5.954 4.236 1 58.94 ? C6 U10 406 M 1 HETATM 7 C C1M U10 . . . X 12 39.415 8.083 4.336 1 55.05 ? C1M U10 406 M 1 HETATM 8 C C3M U10 . . . X 12 44.671 9.179 3.948 1 65.69 ? C3M U10 406 M 1 HETATM 9 C C4M U10 . . . X 12 45.59 5.793 4 1 63.18 ? C4M U10 406 M 1 HETATM 10 C C7 U10 . . . X 12 39.6 5.058 3.988 1 65.41 ? C7 U10 406 M 1 HETATM 11 C C8 U10 . . . X 12 38.912 5.262 2.642 1 63.76 ? C8 U10 406 M 1 HETATM 12 C C9 U10 . . . X 12 38.692 4.23 1.598 1 62.62 ? C9 U10 406 M 1 HETATM 13 C C10 U10 . . . X 12 39.083 2.802 1.84 1 57.58 ? C10 U10 406 M 1 HETATM 14 C C11 U10 . . . X 12 38.066 4.621 0.263 1 56.42 ? C11 U10 406 M 1 HETATM 15 C C12 U10 . . . X 12 36.809 3.816 -0.066 1 58.65 ? C12 U10 406 M 1 HETATM 16 C C13 U10 . . . X 12 35.774 4.091 1.002 1 65.24 ? C13 U10 406 M 1 HETATM 17 C C14 U10 . . . X 12 34.45 4.637 0.679 1 66.21 ? C14 U10 406 M 1 HETATM 18 C C15 U10 . . . X 12 33.991 4.701 -0.738 1 65.63 ? C15 U10 406 M 1 HETATM 19 C C16 U10 . . . X 12 33.55 5.131 1.794 1 77.21 ? C16 U10 406 M 1 HETATM 20 C C17 U10 . . . X 12 32.322 4.235 1.932 1 63.71 ? C17 U10 406 M 1 HETATM 21 C C18 U10 . . . X 12 32.787 2.877 2.39 1 68.75 ? C18 U10 406 M 1 HETATM 22 C C19 U10 . . . X 12 31.97 1.667 2.215 1 68.57 ? C19 U10 406 M 1 HETATM 23 C C20 U10 . . . X 12 30.866 1.612 1.217 1 69.88 ? C20 U10 406 M 1 HETATM 24 C C21 U10 . . . X 12 32.257 0.453 3.057 1 79.45 ? C21 U10 406 M 1 HETATM 25 C C22 U10 . . . X 12 31.345 0.426 4.285 1 70.31 ? C22 U10 406 M 1 HETATM 26 C C23 U10 . . . X 12 31.53 -0.937 4.899 1 66.36 ? C23 U10 406 M 1 HETATM 27 C C24 U10 . . . X 12 31.226 -1.24 6.297 1 73.48 ? C24 U10 406 M 1 HETATM 28 C C25 U10 . . . X 12 30.319 -0.375 7.13 1 74.06 ? C25 U10 406 M 1 HETATM 29 C C26 U10 . . . X 12 31.831 -2.48 6.887 1 73.84 ? C26 U10 406 M 1 HETATM 30 C C27 U10 . . . X 12 30.801 -3.598 6.87 1 79.51 ? C27 U10 406 M 1 HETATM 31 C C28 U10 . . . X 12 30.772 -4.187 8.26 1 88.94 ? C28 U10 406 M 1 HETATM 32 C C29 U10 . . . X 12 30.886 -5.644 8.454 1 94.43 ? C29 U10 406 M 1 HETATM 33 C C30 U10 . . . X 12 30.635 -6.581 7.298 1 95.89 ? C30 U10 406 M 1 HETATM 34 C C31 U10 . . . X 12 31.268 -6.178 9.823 1 86.31 ? C31 U10 406 M 1 HETATM 35 C C32 U10 . . . X 12 31.405 -4.998 10.785 1 83.42 ? C32 U10 406 M 1 HETATM 36 C C33 U10 . . . X 12 32.121 -5.428 12.038 1 78.92 ? C33 U10 406 M 1 HETATM 37 C C34 U10 . . . X 12 31.358 -5.524 13.283 1 83.4 ? C34 U10 406 M 1 HETATM 38 C C35 U10 . . . X 12 29.86 -5.368 13.252 1 89.17 ? C35 U10 406 M 1 HETATM 39 C C36 U10 . . . X 12 32.079 -5.788 14.582 1 82.97 ? C36 U10 406 M 1 HETATM 40 C C37 U10 . . . X 12 33.348 -6.608 14.329 1 78.05 ? C37 U10 406 M 1 HETATM 41 C C38 U10 . . . X 12 33.038 -8.065 14.085 1 80.62 ? C38 U10 406 M 1 HETATM 42 C C39 U10 . . . X 12 32.369 -8.939 15.071 1 90.75 ? C39 U10 406 M 1 HETATM 43 C C40 U10 . . . X 12 31.807 -10.253 14.608 1 95.1 ? C40 U10 406 M 1 HETATM 44 C C41 U10 . . . X 12 32.228 -8.565 16.53 1 85.59 ? C41 U10 406 M 1 HETATM 45 O O2 U10 . . . X 12 41.759 9.324 4.657 1 57.57 ? O2 U10 406 M 1 HETATM 46 O O3 U10 . . . X 12 44.165 8.194 4.811 1 65.13 ? O3 U10 406 M 1 HETATM 47 O O4 U10 . . . X 12 44.351 5.533 4.64 1 68.14 ? O4 U10 406 M 1 HETATM 48 O O5 U10 . . . X 12 42.1 4.115 4.412 1 67.05 ? O5 U10 406 M 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 294 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #