data_8C7C # _model_server_result.job_id 4qyTmpnre7KHpHL-6NK25w _model_server_result.datetime_utc '2024-11-30 20:24:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c7c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Y","auth_seq_id":407}' # _entry.id 8C7C # _exptl.entry_id 8C7C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 594.993 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SPEROIDENONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.58 _cell.angle_gamma 90 _cell.entry_id 8C7C _cell.length_a 253.13 _cell.length_b 75.98 _cell.length_c 65.85 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C7C _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 13 _struct_asym.id Y _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 278 L CYS 278 1_555 C SG CYS 84 M CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 B NE2 HIS 190 L HIS 190 1_555 W FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc2 B NE2 HIS 230 L HIS 230 1_555 W FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc3 C NE2 HIS 219 M HIS 219 1_555 W FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc4 C OE1 GLU 234 M GLU 234 1_555 W FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc5 C OE2 GLU 234 M GLU 234 1_555 W FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc6 C NE2 HIS 266 M HIS 266 1_555 W FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? # _chem_comp.formula 'C41 H70 O2' _chem_comp.formula_weight 594.993 _chem_comp.id SPN _chem_comp.mon_nstd_flag . _chem_comp.name SPEROIDENONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CMA O1 SPN sing 919 n n CMA HMA1 SPN sing 920 n n CMA HMA2 SPN sing 921 n n CMA HMA3 SPN sing 922 n n O1 C1 SPN sing 923 n n CM1 C1 SPN sing 924 n n CM1 HM11 SPN sing 925 n n CM1 HM12 SPN sing 926 n n CM1 HM13 SPN sing 927 n n CM2 C1 SPN sing 928 n n CM2 HM21 SPN sing 929 n n CM2 HM22 SPN sing 930 n n CM2 HM23 SPN sing 931 n n C1 C2 SPN sing 932 n n C2 O2 SPN doub 933 n n C2 C3 SPN sing 934 n n C3 C4 SPN sing 935 n n C3 H31 SPN sing 936 n n C3 H32 SPN sing 937 n n C4 C5 SPN doub 938 e n C4 H4 SPN sing 939 n n C5 CM3 SPN sing 940 n n C5 C6 SPN sing 941 n n CM3 HM31 SPN sing 942 n n CM3 HM32 SPN sing 943 n n CM3 HM33 SPN sing 944 n n C6 C7 SPN sing 945 n n C6 H61 SPN sing 946 n n C6 H62 SPN sing 947 n n C7 C8 SPN sing 948 n n C7 H71 SPN sing 949 n n C7 H72 SPN sing 950 n n C8 C9 SPN doub 951 e n C8 H8 SPN sing 952 n n C9 CM4 SPN sing 953 n n C9 C10 SPN sing 954 n n CM4 HM41 SPN sing 955 n n CM4 HM42 SPN sing 956 n n CM4 HM43 SPN sing 957 n n C10 C11 SPN sing 958 n n C10 H101 SPN sing 959 n n C10 H102 SPN sing 960 n n C11 C12 SPN sing 961 n n C11 H111 SPN sing 962 n n C11 H112 SPN sing 963 n n C12 C13 SPN doub 964 e n C12 H12 SPN sing 965 n n C13 CM5 SPN sing 966 n n C13 C14 SPN sing 967 n n CM5 HM51 SPN sing 968 n n CM5 HM52 SPN sing 969 n n CM5 HM53 SPN sing 970 n n C14 C15 SPN sing 971 n n C14 H141 SPN sing 972 n n C14 H142 SPN sing 973 n n C15 C16 SPN sing 974 n n C15 H151 SPN sing 975 n n C15 H152 SPN sing 976 n n C16 C17 SPN sing 977 n n C16 H161 SPN sing 978 n n C16 H162 SPN sing 979 n n C17 C18 SPN sing 980 n n C17 H171 SPN sing 981 n n C17 H172 SPN sing 982 n n C18 CM6 SPN sing 983 n n C18 C19 SPN doub 984 e n CM6 HM61 SPN sing 985 n n CM6 HM62 SPN sing 986 n n CM6 HM63 SPN sing 987 n n C19 C20 SPN sing 988 n n C19 H19 SPN sing 989 n n C20 C21 SPN sing 990 n n C20 H201 SPN sing 991 n n C20 H202 SPN sing 992 n n C21 C22 SPN sing 993 n n C21 H211 SPN sing 994 n n C21 H212 SPN sing 995 n n C22 CM7 SPN sing 996 n n C22 C23 SPN sing 997 n n C22 H22 SPN sing 998 n n CM7 HM71 SPN sing 999 n n CM7 HM72 SPN sing 1000 n n CM7 HM73 SPN sing 1001 n n C23 C24 SPN sing 1002 n n C23 H231 SPN sing 1003 n n C23 H232 SPN sing 1004 n n C24 C25 SPN sing 1005 n n C24 H241 SPN sing 1006 n n C24 H242 SPN sing 1007 n n C25 C26 SPN doub 1008 e n C25 H25 SPN sing 1009 n n C26 CM8 SPN sing 1010 n n C26 C27 SPN sing 1011 n n CM8 HM81 SPN sing 1012 n n CM8 HM82 SPN sing 1013 n n CM8 HM83 SPN sing 1014 n n C27 C28 SPN sing 1015 n n C27 H271 SPN sing 1016 n n C27 H272 SPN sing 1017 n n C28 C29 SPN sing 1018 n n C28 H281 SPN sing 1019 n n C28 H282 SPN sing 1020 n n C29 C30 SPN doub 1021 n n C29 H29 SPN sing 1022 n n C30 CM9 SPN sing 1023 n n C30 CMB SPN sing 1024 n n CM9 HM91 SPN sing 1025 n n CM9 HM92 SPN sing 1026 n n CM9 HM93 SPN sing 1027 n n CMB HMB1 SPN sing 1028 n n CMB HMB2 SPN sing 1029 n n CMB HMB3 SPN sing 1030 n n # _atom_sites.entry_id 8C7C _atom_sites.fract_transf_matrix[1][1] 0.003951 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000386 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013161 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015258 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 LDA H 1 301 702 LDA LDA . E 5 UNL H 1 302 803 UNL UNL . F 5 UNL H 1 303 804 UNL UNL . G 6 EDO H 1 304 51 EDO EDO . H 6 EDO H 1 305 59 EDO EDO . I 7 BCL L 1 301 302 BCL BCL . J 7 BCL L 1 302 304 BCL BCL . K 8 BPH L 1 303 402 BPH BPH . L 4 LDA L 1 304 708 LDA LDA . M 5 UNL L 1 305 805 UNL UNL . N 5 UNL L 1 306 807 UNL UNL . O 5 UNL L 1 307 808 UNL UNL . P 6 EDO L 1 308 48 EDO EDO . Q 6 EDO L 1 309 50 EDO EDO . R 9 HTO L 1 310 63 HTO HTO . S 10 CDL M 1 401 900 CDL CDL . T 7 BCL M 1 402 301 BCL BCL . U 7 BCL M 1 403 303 BCL BCL . V 8 BPH M 1 404 401 BPH BPH . W 11 FE M 1 405 500 FE FE . X 12 U10 M 1 406 501 U10 U10 . Y 13 SPN M 1 407 600 SPN SPN . Z 4 LDA M 1 408 701 LDA LDA . AA 4 LDA M 1 409 705 LDA LDA . BA 5 UNL M 1 410 806 UNL UNL . CA 5 UNL M 1 411 809 UNL UNL . DA 5 UNL M 1 412 810 UNL UNL . EA 4 LDA M 1 413 1 LDA LDA . FA 14 HOH H 1 401 15 HOH HOH . FA 14 HOH H 2 402 1 HOH HOH . FA 14 HOH H 3 403 13 HOH HOH . FA 14 HOH H 4 404 16 HOH HOH . FA 14 HOH H 5 405 9 HOH HOH . FA 14 HOH H 6 406 6 HOH HOH . FA 14 HOH H 7 407 19 HOH HOH . GA 14 HOH L 1 401 10 HOH HOH . GA 14 HOH L 2 402 3 HOH HOH . GA 14 HOH L 3 403 18 HOH HOH . GA 14 HOH L 4 404 12 HOH HOH . GA 14 HOH L 5 405 5 HOH HOH . GA 14 HOH L 6 406 8 HOH HOH . GA 14 HOH L 7 407 20 HOH HOH . HA 14 HOH M 1 501 14 HOH HOH . HA 14 HOH M 2 502 7 HOH HOH . HA 14 HOH M 3 503 17 HOH HOH . HA 14 HOH M 4 504 4 HOH HOH . HA 14 HOH M 5 505 11 HOH HOH . HA 14 HOH M 6 506 2 HOH HOH . HA 14 HOH M 7 507 21 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CMA SPN . . . Y 13 25.275 46.692 -12.384 1 114.85 ? CMA SPN 407 M 1 HETATM 2 O O1 SPN . . . Y 13 24.992 45.608 -13.245 1 109.47 ? O1 SPN 407 M 1 HETATM 3 C CM1 SPN . . . Y 13 25.36 45.849 -15.655 1 104.47 ? CM1 SPN 407 M 1 HETATM 4 C CM2 SPN . . . Y 13 27.311 45.847 -14.081 1 110.25 ? CM2 SPN 407 M 1 HETATM 5 C C1 SPN . . . Y 13 25.883 45.327 -14.317 1 112.95 ? C1 SPN 407 M 1 HETATM 6 C C2 SPN . . . Y 13 25.984 43.791 -14.372 1 112.43 ? C2 SPN 407 M 1 HETATM 7 O O2 SPN . . . Y 13 26.743 43.262 -15.161 1 107.84 ? O2 SPN 407 M 1 HETATM 8 C C3 SPN . . . Y 13 25.111 42.988 -13.416 1 102.55 ? C3 SPN 407 M 1 HETATM 9 C C4 SPN . . . Y 13 24.982 41.542 -13.789 1 101.13 ? C4 SPN 407 M 1 HETATM 10 C C5 SPN . . . Y 13 24.097 40.616 -13.39 1 100.05 ? C5 SPN 407 M 1 HETATM 11 C CM3 SPN . . . Y 13 22.977 40.824 -12.41 1 98.44 ? CM3 SPN 407 M 1 HETATM 12 C C6 SPN . . . Y 13 24.213 39.222 -13.957 1 95.21 ? C6 SPN 407 M 1 HETATM 13 C C7 SPN . . . Y 13 23.28 38.175 -13.326 1 98.55 ? C7 SPN 407 M 1 HETATM 14 C C8 SPN . . . Y 13 23.554 36.814 -13.89 1 94.11 ? C8 SPN 407 M 1 HETATM 15 C C9 SPN . . . Y 13 22.986 35.653 -13.561 1 91.97 ? C9 SPN 407 M 1 HETATM 16 C CM4 SPN . . . Y 13 21.918 35.524 -12.517 1 89.2 ? CM4 SPN 407 M 1 HETATM 17 C C10 SPN . . . Y 13 23.394 34.373 -14.247 1 80.25 ? C10 SPN 407 M 1 HETATM 18 C C11 SPN . . . Y 13 23.05 33.12 -13.434 1 86.47 ? C11 SPN 407 M 1 HETATM 19 C C12 SPN . . . Y 13 23.356 31.908 -14.241 1 84.22 ? C12 SPN 407 M 1 HETATM 20 C C13 SPN . . . Y 13 22.887 30.663 -14.131 1 78.74 ? C13 SPN 407 M 1 HETATM 21 C CM5 SPN . . . Y 13 21.91 30.208 -13.096 1 73.59 ? CM5 SPN 407 M 1 HETATM 22 C C14 SPN . . . Y 13 23.388 29.622 -15.101 1 73.65 ? C14 SPN 407 M 1 HETATM 23 C C15 SPN . . . Y 13 22.375 28.575 -15.552 1 76.91 ? C15 SPN 407 M 1 HETATM 24 C C16 SPN . . . Y 13 23.047 27.377 -16.227 1 71.32 ? C16 SPN 407 M 1 HETATM 25 C C17 SPN . . . Y 13 23.605 27.746 -17.599 1 73 ? C17 SPN 407 M 1 HETATM 26 C C18 SPN . . . Y 13 23.993 26.593 -18.491 1 77.77 ? C18 SPN 407 M 1 HETATM 27 C CM6 SPN . . . Y 13 23.713 25.209 -17.981 1 78.05 ? CM6 SPN 407 M 1 HETATM 28 C C19 SPN . . . Y 13 24.558 26.861 -19.671 1 81.52 ? C19 SPN 407 M 1 HETATM 29 C C20 SPN . . . Y 13 25.066 25.973 -20.772 1 79.87 ? C20 SPN 407 M 1 HETATM 30 C C21 SPN . . . Y 13 25.29 26.764 -22.078 1 85.09 ? C21 SPN 407 M 1 HETATM 31 C C22 SPN . . . Y 13 26.492 26.414 -22.977 1 76.53 ? C22 SPN 407 M 1 HETATM 32 C CM7 SPN . . . Y 13 27.34 27.64 -23.249 1 79.31 ? CM7 SPN 407 M 1 HETATM 33 C C23 SPN . . . Y 13 25.965 25.901 -24.315 1 79.79 ? C23 SPN 407 M 1 HETATM 34 C C24 SPN . . . Y 13 26.893 26.048 -25.523 1 80.41 ? C24 SPN 407 M 1 HETATM 35 C C25 SPN . . . Y 13 26.8 27.255 -26.422 1 85.45 ? C25 SPN 407 M 1 HETATM 36 C C26 SPN . . . Y 13 25.823 27.758 -27.184 1 86.39 ? C26 SPN 407 M 1 HETATM 37 C CM8 SPN . . . Y 13 24.443 27.182 -27.329 1 86.19 ? CM8 SPN 407 M 1 HETATM 38 C C27 SPN . . . Y 13 26.081 29.003 -27.994 1 91.66 ? C27 SPN 407 M 1 HETATM 39 C C28 SPN . . . Y 13 25.8 28.747 -29.482 1 96.53 ? C28 SPN 407 M 1 HETATM 40 C C29 SPN . . . Y 13 26.252 29.854 -30.381 1 96.92 ? C29 SPN 407 M 1 HETATM 41 C C30 SPN . . . Y 13 27.311 29.827 -31.191 1 96.85 ? C30 SPN 407 M 1 HETATM 42 C CM9 SPN . . . Y 13 28.198 28.615 -31.257 1 93.95 ? CM9 SPN 407 M 1 HETATM 43 C CMB SPN . . . Y 13 27.724 30.955 -32.085 1 93.15 ? CMB SPN 407 M 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 43 #