data_8C7R # _model_server_result.job_id AE3Ryf58Boj0RWJlHdTOAA _model_server_result.datetime_utc '2024-11-26 19:56:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c7r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":906}' # _entry.id 8C7R # _exptl.entry_id 8C7R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 104.01 _cell.angle_beta 98.43 _cell.angle_gamma 93.27 _cell.entry_id 8C7R _cell.length_a 53.529 _cell.length_b 61.843 _cell.length_c 63.85 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C7R _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall 'P 1' _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 H N N ? 6 I N N ? 6 J N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 906 NAG 2 n B NAG 2 B 2 NAG A 907 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 58 A CYS 58 1_555 A SG CYS 75 A CYS 75 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 A SG CYS 62 A CYS 62 1_555 A SG CYS 93 A CYS 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf3 A SG CYS 73 A CYS 73 1_555 A SG CYS 86 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 79 A CYS 79 1_555 A SG CYS 85 A CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf5 A SG CYS 102 A CYS 102 1_555 A SG CYS 119 A CYS 119 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 A SG CYS 107 A CYS 107 1_555 A SG CYS 137 A CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf7 A SG CYS 117 A CYS 117 1_555 A SG CYS 130 A CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 A SG CYS 123 A CYS 123 1_555 A SG CYS 129 A CYS 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf9 A SG CYS 148 A CYS 148 1_555 A SG CYS 194 A CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf10 A SG CYS 156 A CYS 156 1_555 A SG CYS 350 A CYS 350 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf11 A SG CYS 366 A CYS 366 1_555 A SG CYS 468 A CYS 468 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf12 A SG CYS 413 A CYS 413 1_555 A SG CYS 805 A CYS 805 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf13 A SG CYS 566 A CYS 566 1_555 A SG CYS 666 A CYS 666 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf14 A SG CYS 568 A CYS 568 1_555 A SG CYS 651 A CYS 651 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf15 A SG CYS 774 A CYS 774 1_555 A SG CYS 784 A CYS 784 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? covale ? covale1 A ND2 ASN 524 A ASN 524 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? metalc ? metalc1 A OD1 ASP 171 A ASP 171 1_555 F ZN ZN . A ZN 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? metalc ? metalc2 A OG1 THR 209 A THR 209 1_555 F ZN ZN . A ZN 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc3 A OD1 ASP 311 A ASP 311 1_555 E ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc4 A NE2 HIS 315 A HIS 315 1_555 E ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc5 A OD2 ASP 358 A ASP 358 1_555 F ZN ZN . A ZN 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.226 ? metalc ? metalc6 A NE2 HIS 359 A HIS 359 1_555 F ZN ZN . A ZN 904 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? metalc ? metalc7 A NE2 HIS 474 A HIS 474 1_555 E ZN ZN . A ZN 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc8 A OE2 GLU 507 A GLU 507 1_555 K CA CA . A CA 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? metalc ? metalc9 A O ASN 524 A ASN 524 1_555 K CA CA . A CA 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? metalc ? metalc10 A OG1 THR 526 A THR 526 1_555 K CA CA . A CA 909 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.71 ? metalc ? metalc11 A OD1 ASP 739 A ASP 739 1_555 L CA CA . A CA 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc12 A OD1 ASN 741 A ASN 741 1_555 L CA CA . A CA 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? metalc ? metalc13 A OD1 ASP 743 A ASP 743 1_555 L CA CA . A CA 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc14 A O LEU 745 A LEU 745 1_555 L CA CA . A CA 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc15 A OD1 ASP 747 A ASP 747 1_555 L CA CA . A CA 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.281 ? metalc ? metalc16 K CA CA . A CA 909 1_555 M O HOH . A HOH 1025 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.084 ? # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8C7R _atom_sites.fract_transf_matrix[1][1] 0.018681 _atom_sites.fract_transf_matrix[1][2] 0.001067 _atom_sites.fract_transf_matrix[1][3] 0.003142 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016196 _atom_sites.fract_transf_matrix[2][3] 0.004246 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016368 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 T8R A 1 901 901 T8R LIG . D 4 5JK A 1 902 902 5JK 5JK . E 5 ZN A 1 903 903 ZN ZN . F 5 ZN A 1 904 904 ZN ZN . G 6 IOD A 1 905 905 IOD IOD . H 6 IOD A 1 906 2 IOD IOD . I 6 IOD A 1 907 3 IOD IOD . J 6 IOD A 1 908 4 IOD IOD . K 7 CA A 1 909 1 CA CA . L 7 CA A 1 910 2 CA CA . M 8 HOH A 1 1001 65 HOH HOH . M 8 HOH A 2 1002 50 HOH HOH . M 8 HOH A 3 1003 19 HOH HOH . M 8 HOH A 4 1004 51 HOH HOH . M 8 HOH A 5 1005 6 HOH HOH . M 8 HOH A 6 1006 64 HOH HOH . M 8 HOH A 7 1007 47 HOH HOH . M 8 HOH A 8 1008 26 HOH HOH . M 8 HOH A 9 1009 25 HOH HOH . M 8 HOH A 10 1010 17 HOH HOH . M 8 HOH A 11 1011 4 HOH HOH . M 8 HOH A 12 1012 8 HOH HOH . M 8 HOH A 13 1013 56 HOH HOH . M 8 HOH A 14 1014 67 HOH HOH . M 8 HOH A 15 1015 1 HOH HOH . M 8 HOH A 16 1016 63 HOH HOH . M 8 HOH A 17 1017 9 HOH HOH . M 8 HOH A 18 1018 37 HOH HOH . M 8 HOH A 19 1019 35 HOH HOH . M 8 HOH A 20 1020 27 HOH HOH . M 8 HOH A 21 1021 7 HOH HOH . M 8 HOH A 22 1022 23 HOH HOH . M 8 HOH A 23 1023 15 HOH HOH . M 8 HOH A 24 1024 16 HOH HOH . M 8 HOH A 25 1025 5 HOH HOH . M 8 HOH A 26 1026 36 HOH HOH . M 8 HOH A 27 1027 21 HOH HOH . M 8 HOH A 28 1028 61 HOH HOH . M 8 HOH A 29 1029 45 HOH HOH . M 8 HOH A 30 1030 29 HOH HOH . M 8 HOH A 31 1031 41 HOH HOH . M 8 HOH A 32 1032 22 HOH HOH . M 8 HOH A 33 1033 70 HOH HOH . M 8 HOH A 34 1034 66 HOH HOH . M 8 HOH A 35 1035 10 HOH HOH . M 8 HOH A 36 1036 24 HOH HOH . M 8 HOH A 37 1037 39 HOH HOH . M 8 HOH A 38 1038 53 HOH HOH . M 8 HOH A 39 1039 43 HOH HOH . M 8 HOH A 40 1040 13 HOH HOH . M 8 HOH A 41 1041 48 HOH HOH . M 8 HOH A 42 1042 77 HOH HOH . M 8 HOH A 43 1043 90 HOH HOH . M 8 HOH A 44 1044 81 HOH HOH . M 8 HOH A 45 1045 18 HOH HOH . M 8 HOH A 46 1046 12 HOH HOH . M 8 HOH A 47 1047 20 HOH HOH . M 8 HOH A 48 1048 28 HOH HOH . M 8 HOH A 49 1049 46 HOH HOH . M 8 HOH A 50 1050 49 HOH HOH . M 8 HOH A 51 1051 30 HOH HOH . M 8 HOH A 52 1052 40 HOH HOH . M 8 HOH A 53 1053 11 HOH HOH . M 8 HOH A 54 1054 55 HOH HOH . M 8 HOH A 55 1055 60 HOH HOH . M 8 HOH A 56 1056 58 HOH HOH . M 8 HOH A 57 1057 32 HOH HOH . M 8 HOH A 58 1058 97 HOH HOH . M 8 HOH A 59 1059 74 HOH HOH . M 8 HOH A 60 1060 34 HOH HOH . M 8 HOH A 61 1061 44 HOH HOH . M 8 HOH A 62 1062 54 HOH HOH . M 8 HOH A 63 1063 76 HOH HOH . M 8 HOH A 64 1064 96 HOH HOH . M 8 HOH A 65 1065 95 HOH HOH . M 8 HOH A 66 1066 84 HOH HOH . M 8 HOH A 67 1067 31 HOH HOH . M 8 HOH A 68 1068 78 HOH HOH . M 8 HOH A 69 1069 52 HOH HOH . M 8 HOH A 70 1070 68 HOH HOH . M 8 HOH A 71 1071 98 HOH HOH . M 8 HOH A 72 1072 71 HOH HOH . M 8 HOH A 73 1073 82 HOH HOH . M 8 HOH A 74 1074 69 HOH HOH . M 8 HOH A 75 1075 86 HOH HOH . M 8 HOH A 76 1076 57 HOH HOH . M 8 HOH A 77 1077 38 HOH HOH . M 8 HOH A 78 1078 75 HOH HOH . M 8 HOH A 79 1079 79 HOH HOH . M 8 HOH A 80 1080 89 HOH HOH . M 8 HOH A 81 1081 91 HOH HOH . M 8 HOH A 82 1082 73 HOH HOH . M 8 HOH A 83 1083 80 HOH HOH . M 8 HOH A 84 1084 83 HOH HOH . M 8 HOH A 85 1085 87 HOH HOH . M 8 HOH A 86 1086 93 HOH HOH . M 8 HOH A 87 1087 72 HOH HOH . M 8 HOH A 88 1088 88 HOH HOH . M 8 HOH A 89 1089 92 HOH HOH . M 8 HOH A 90 1090 59 HOH HOH . M 8 HOH A 91 1091 33 HOH HOH . M 8 HOH A 92 1092 85 HOH HOH . M 8 HOH A 93 1093 42 HOH HOH . M 8 HOH A 94 1094 94 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 6 _atom_site.Cartn_x 49.839 _atom_site.Cartn_y 36.868 _atom_site.Cartn_z 34.965 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 78.37 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 906 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 41 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 25 _model_server_stats.element_count 1 #