data_8C81 # _model_server_result.job_id sQY2aJG0aqiNav0PUAgQjQ _model_server_result.datetime_utc '2025-02-05 18:59:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c81 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":601}' # _entry.id 8C81 # _exptl.entry_id 8C81 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 247.142 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 9 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id C _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 366 _struct_conn.ptnr1_auth_asym_id C _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 366 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id K _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id C _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.43 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 PLP doub 334 n y N1 C6 PLP sing 335 n y C2 C2A PLP sing 336 n n C2 C3 PLP sing 337 n y C2A H2A1 PLP sing 338 n n C2A H2A2 PLP sing 339 n n C2A H2A3 PLP sing 340 n n C3 O3 PLP sing 341 n n C3 C4 PLP doub 342 n y O3 HO3 PLP sing 343 n n C4 C4A PLP sing 344 n n C4 C5 PLP sing 345 n y C4A O4A PLP doub 346 n n C4A H4A PLP sing 347 n n C5 C6 PLP doub 348 n y C5 C5A PLP sing 349 n n C6 H6 PLP sing 350 n n C5A O4P PLP sing 351 n n C5A H5A1 PLP sing 352 n n C5A H5A2 PLP sing 353 n n O4P P PLP sing 354 n n P O1P PLP doub 355 n n P O2P PLP sing 356 n n P O3P PLP sing 357 n n O2P HOP2 PLP sing 358 n n O3P HOP3 PLP sing 359 n n # _atom_sites.entry_id 8C81 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 ERG A 1 301 301 ERG ERG . G 7 Z8A A 1 302 302 Z8A Z8A . H 8 Q7G A 1 303 303 Q7G Q7G . I 6 ERG B 1 601 601 ERG ERG . J 6 ERG B 1 602 602 ERG ERG . K 9 PLP C 1 601 601 PLP PLP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . K 9 207.377 201.645 165.353 1 83.96 ? N1 PLP 601 C 1 HETATM 2 C C2 PLP . . . K 9 208.222 202.145 166.32 1 83.96 ? C2 PLP 601 C 1 HETATM 3 C C2A PLP . . . K 9 209.523 201.461 166.609 1 83.96 ? C2A PLP 601 C 1 HETATM 4 C C3 PLP . . . K 9 207.871 203.284 167.029 1 83.96 ? C3 PLP 601 C 1 HETATM 5 O O3 PLP . . . K 9 208.715 203.775 167.988 1 83.96 ? O3 PLP 601 C 1 HETATM 6 C C4 PLP . . . K 9 206.668 203.925 166.767 1 83.96 ? C4 PLP 601 C 1 HETATM 7 C C4A PLP . . . K 9 206.45 205.319 167.273 1 83.96 ? C4A PLP 601 C 1 HETATM 8 C C5 PLP . . . K 9 205.822 203.416 165.792 1 83.96 ? C5 PLP 601 C 1 HETATM 9 C C6 PLP . . . K 9 206.18 202.275 165.087 1 83.96 ? C6 PLP 601 C 1 HETATM 10 C C5A PLP . . . K 9 204.511 204.107 165.499 1 83.96 ? C5A PLP 601 C 1 HETATM 11 O O4P PLP . . . K 9 203.941 203.555 164.336 1 83.96 ? O4P PLP 601 C 1 HETATM 12 P P PLP . . . K 9 202.754 204.325 163.573 1 83.96 ? P PLP 601 C 1 HETATM 13 O O1P PLP . . . K 9 202.046 203.373 162.642 1 83.96 ? O1P PLP 601 C 1 HETATM 14 O O2P PLP . . . K 9 203.349 205.454 162.774 1 83.96 ? O2P PLP 601 C 1 HETATM 15 O O3P PLP . . . K 9 201.781 204.88 164.582 1 83.96 ? O3P PLP 601 C 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 15 #