data_8C87 # _model_server_result.job_id RLq0UTsFYzsdXX2zObj8Ng _model_server_result.datetime_utc '2024-11-24 07:49:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c87 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":301}' # _entry.id 8C87 # _exptl.entry_id 8C87 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8C87 _cell.length_a 99.725 _cell.length_b 99.725 _cell.length_c 239.107 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C87 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall 'P 4n 2n' _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B NE2 HIS 190 L HIS 190 1_555 Y FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc2 B NE2 HIS 230 L HIS 230 1_555 Y FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc3 C NE2 HIS 219 M HIS 219 1_555 Y FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc4 C OE2 GLU 234 M GLU 234 1_555 Y FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc5 C NE2 HIS 266 M HIS 266 1_555 Y FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 866 n n C10 C9 OLC doub 867 n n C10 C11 OLC sing 868 n n C9 C8 OLC sing 869 n n C17 C16 OLC sing 870 z n C11 C12 OLC sing 871 n n C8 C7 OLC sing 872 n n C24 C22 OLC sing 873 n n C24 O25 OLC sing 874 n n C16 C15 OLC sing 875 n n C12 C13 OLC sing 876 n n C7 C6 OLC sing 877 n n C15 C14 OLC sing 878 n n C13 C14 OLC sing 879 n n C6 C5 OLC sing 880 n n C5 C4 OLC sing 881 n n C4 C3 OLC sing 882 n n C3 C2 OLC sing 883 n n C2 C1 OLC sing 884 n n C21 C22 OLC sing 885 n n C21 O20 OLC sing 886 n n C1 O19 OLC doub 887 n n C1 O20 OLC sing 888 n n C22 O23 OLC sing 889 n n C18 H18 OLC sing 890 n n C18 H18A OLC sing 891 n n C18 H18B OLC sing 892 n n C10 H10 OLC sing 893 n n C9 H9 OLC sing 894 n n C17 H17 OLC sing 895 n n C17 H17A OLC sing 896 n n C11 H11 OLC sing 897 n n C11 H11A OLC sing 898 n n C8 H8 OLC sing 899 n n C8 H8A OLC sing 900 n n C24 H24 OLC sing 901 n n C24 H24A OLC sing 902 n n C16 H16 OLC sing 903 n n C16 H16A OLC sing 904 n n C12 H12 OLC sing 905 n n C12 H12A OLC sing 906 n n C7 H7 OLC sing 907 n n C7 H7A OLC sing 908 n n C15 H15 OLC sing 909 n n C15 H15A OLC sing 910 n n C13 H13 OLC sing 911 n n C13 H13A OLC sing 912 n n C6 H6 OLC sing 913 n n C6 H6A OLC sing 914 n n C14 H14 OLC sing 915 n n C14 H14A OLC sing 916 n n C5 H5 OLC sing 917 n n C5 H5A OLC sing 918 n n C4 H4 OLC sing 919 n n C4 H4A OLC sing 920 n n C3 H3 OLC sing 921 n n C3 H3A OLC sing 922 n n C2 H2 OLC sing 923 n n C2 H2A OLC sing 924 n n C21 H21 OLC sing 925 n n C21 H21A OLC sing 926 n n C22 H22 OLC sing 927 n n O25 HO25 OLC sing 928 n n O23 HO23 OLC sing 929 n n # _atom_sites.entry_id 8C87 _atom_sites.fract_transf_matrix[1][1] 0.010028 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010028 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004182 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 LDA H 1 301 702 LDA LDA . E 5 UNL H 1 302 803 UNL UNL . F 5 UNL H 1 303 804 UNL UNL . G 6 EDO H 1 304 52 EDO EDO . H 4 LDA H 1 305 2 LDA LDA . I 4 LDA H 1 306 3 LDA LDA . J 4 LDA H 1 307 6 LDA LDA . K 7 OLC L 1 301 301 OLC OLC . L 8 BCL L 1 302 301 BCL BCL . M 8 BCL L 1 303 302 BCL BCL . N 8 BCL L 1 304 304 BCL BCL . O 9 BPH L 1 305 402 BPH BPH . P 4 LDA L 1 306 708 LDA LDA . Q 5 UNL L 1 307 808 UNL UNL . R 5 UNL L 1 308 810 UNL UNL . S 10 HTO L 1 309 61 HTO HTO . T 10 HTO L 1 310 63 HTO HTO . U 4 LDA L 1 311 4 LDA LDA . V 11 CDL M 1 401 900 CDL CDL . W 8 BCL M 1 402 303 BCL BCL . X 9 BPH M 1 403 401 BPH BPH . Y 12 FE M 1 404 500 FE FE . Z 13 U10 M 1 405 501 U10 U10 . AA 14 SPN M 1 406 600 SPN SPN . BA 4 LDA M 1 407 701 LDA LDA . CA 4 LDA M 1 408 705 LDA LDA . DA 4 LDA M 1 409 709 LDA LDA . EA 4 LDA M 1 410 710 LDA LDA . FA 5 UNL M 1 411 809 UNL UNL . GA 6 EDO M 1 412 53 EDO EDO . HA 4 LDA M 1 413 1 LDA LDA . IA 4 LDA M 1 414 5 LDA LDA . JA 15 HOH H 1 401 32 HOH HOH . JA 15 HOH H 2 402 4 HOH HOH . JA 15 HOH H 3 403 21 HOH HOH . JA 15 HOH H 4 404 56 HOH HOH . JA 15 HOH H 5 405 18 HOH HOH . JA 15 HOH H 6 406 41 HOH HOH . JA 15 HOH H 7 407 24 HOH HOH . JA 15 HOH H 8 408 15 HOH HOH . JA 15 HOH H 9 409 22 HOH HOH . JA 15 HOH H 10 410 34 HOH HOH . JA 15 HOH H 11 411 62 HOH HOH . JA 15 HOH H 12 412 53 HOH HOH . JA 15 HOH H 13 413 6 HOH HOH . JA 15 HOH H 14 414 12 HOH HOH . JA 15 HOH H 15 415 1 HOH HOH . JA 15 HOH H 16 416 9 HOH HOH . JA 15 HOH H 17 417 59 HOH HOH . JA 15 HOH H 18 418 8 HOH HOH . JA 15 HOH H 19 419 50 HOH HOH . JA 15 HOH H 20 420 61 HOH HOH . JA 15 HOH H 21 421 11 HOH HOH . JA 15 HOH H 22 422 49 HOH HOH . JA 15 HOH H 23 423 38 HOH HOH . JA 15 HOH H 24 424 51 HOH HOH . JA 15 HOH H 25 425 29 HOH HOH . JA 15 HOH H 26 426 46 HOH HOH . JA 15 HOH H 27 427 48 HOH HOH . JA 15 HOH H 28 428 52 HOH HOH . KA 15 HOH L 1 401 16 HOH HOH . KA 15 HOH L 2 402 27 HOH HOH . KA 15 HOH L 3 403 58 HOH HOH . KA 15 HOH L 4 404 35 HOH HOH . KA 15 HOH L 5 405 31 HOH HOH . KA 15 HOH L 6 406 17 HOH HOH . KA 15 HOH L 7 407 5 HOH HOH . KA 15 HOH L 8 408 3 HOH HOH . KA 15 HOH L 9 409 44 HOH HOH . KA 15 HOH L 10 410 36 HOH HOH . KA 15 HOH L 11 411 23 HOH HOH . KA 15 HOH L 12 412 57 HOH HOH . LA 15 HOH M 1 501 30 HOH HOH . LA 15 HOH M 2 502 42 HOH HOH . LA 15 HOH M 3 503 28 HOH HOH . LA 15 HOH M 4 504 33 HOH HOH . LA 15 HOH M 5 505 47 HOH HOH . LA 15 HOH M 6 506 7 HOH HOH . LA 15 HOH M 7 507 54 HOH HOH . LA 15 HOH M 8 508 13 HOH HOH . LA 15 HOH M 9 509 26 HOH HOH . LA 15 HOH M 10 510 40 HOH HOH . LA 15 HOH M 11 511 10 HOH HOH . LA 15 HOH M 12 512 20 HOH HOH . LA 15 HOH M 13 513 19 HOH HOH . LA 15 HOH M 14 514 45 HOH HOH . LA 15 HOH M 15 515 37 HOH HOH . LA 15 HOH M 16 516 55 HOH HOH . LA 15 HOH M 17 517 14 HOH HOH . LA 15 HOH M 18 518 2 HOH HOH . LA 15 HOH M 19 519 43 HOH HOH . LA 15 HOH M 20 520 25 HOH HOH . LA 15 HOH M 21 521 39 HOH HOH . LA 15 HOH M 22 522 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . K 7 2.725 -15.288 -32.008 1 33.76 ? C18 OLC 301 L 1 HETATM 2 C C10 OLC . . . K 7 1.231 -22.708 -33.19 1 35.64 ? C10 OLC 301 L 1 HETATM 3 C C9 OLC . . . K 7 0.44 -23.777 -33.163 1 46.19 ? C9 OLC 301 L 1 HETATM 4 C C17 OLC . . . K 7 2.191 -16.005 -30.781 1 26.61 ? C17 OLC 301 L 1 HETATM 5 C C11 OLC . . . K 7 0.746 -21.332 -32.804 1 53.29 ? C11 OLC 301 L 1 HETATM 6 C C8 OLC . . . K 7 1.042 -25.107 -33.565 1 31.4 ? C8 OLC 301 L 1 HETATM 7 C C24 OLC . . . K 7 1.592 -28.594 -44.31 1 6.79 ? C24 OLC 301 L 1 HETATM 8 C C16 OLC . . . K 7 3.27 -16.838 -30.091 1 31.04 ? C16 OLC 301 L 1 HETATM 9 C C12 OLC . . . K 7 1.872 -20.337 -33.096 1 42.08 ? C12 OLC 301 L 1 HETATM 10 C C7 OLC . . . K 7 0.084 -25.845 -34.491 1 41.46 ? C7 OLC 301 L 1 HETATM 11 C C15 OLC . . . K 7 2.889 -18.321 -29.946 1 36.21 ? C15 OLC 301 L 1 HETATM 12 C C13 OLC . . . K 7 1.892 -19.164 -32.117 1 44.5 ? C13 OLC 301 L 1 HETATM 13 C C6 OLC . . . K 7 0.378 -25.521 -35.955 1 42.09 ? C6 OLC 301 L 1 HETATM 14 C C14 OLC . . . K 7 3.136 -19.141 -31.216 1 25.01 ? C14 OLC 301 L 1 HETATM 15 C C5 OLC . . . K 7 1.817 -25.855 -36.326 1 25.94 ? C5 OLC 301 L 1 HETATM 16 C C4 OLC . . . K 7 1.966 -27.303 -36.76 1 19.62 ? C4 OLC 301 L 1 HETATM 17 C C3 OLC . . . K 7 1.982 -27.428 -38.287 1 14.96 ? C3 OLC 301 L 1 HETATM 18 C C2 OLC . . . K 7 2.179 -28.89 -38.681 1 5.84 ? C2 OLC 301 L 1 HETATM 19 C C21 OLC . . . K 7 3.096 -28.571 -42.415 1 5.23 ? C21 OLC 301 L 1 HETATM 20 C C1 OLC . . . K 7 2.955 -29.09 -39.957 1 7.75 ? C1 OLC 301 L 1 HETATM 21 C C22 OLC . . . K 7 2.248 -27.687 -43.317 1 10.85 ? C22 OLC 301 L 1 HETATM 22 O O19 OLC . . . K 7 3.851 -29.907 -40.067 1 13.61 ? O19 OLC 301 L 1 HETATM 23 O O25 OLC . . . K 7 2.653 -28.892 -45.203 1 11.75 ? O25 OLC 301 L 1 HETATM 24 O O23 OLC . . . K 7 1.227 -27.001 -42.582 1 8.6 ? O23 OLC 301 L 1 HETATM 25 O O20 OLC . . . K 7 2.621 -28.302 -41.108 1 8.09 ? O20 OLC 301 L 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 238 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #