data_8C87 # _model_server_result.job_id SxUNIuEfWVrBLGVsOj8yUg _model_server_result.datetime_utc '2024-10-19 03:39:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c87 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":304}' # _entry.id 8C87 # _exptl.entry_id 8C87 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8C87 _cell.length_a 99.725 _cell.length_b 99.725 _cell.length_c 239.107 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C87 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall 'P 4n 2n' _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 G N N ? 6 GA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B NE2 HIS 190 L HIS 190 1_555 Y FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc2 B NE2 HIS 230 L HIS 230 1_555 Y FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc3 C NE2 HIS 219 M HIS 219 1_555 Y FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc4 C OE2 GLU 234 M GLU 234 1_555 Y FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc5 C NE2 HIS 266 M HIS 266 1_555 Y FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 632 n n C1 C2 EDO sing 633 n n C1 H11 EDO sing 634 n n C1 H12 EDO sing 635 n n O1 HO1 EDO sing 636 n n C2 O2 EDO sing 637 n n C2 H21 EDO sing 638 n n C2 H22 EDO sing 639 n n O2 HO2 EDO sing 640 n n # _atom_sites.entry_id 8C87 _atom_sites.fract_transf_matrix[1][1] 0.010028 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010028 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004182 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 LDA H 1 301 702 LDA LDA . E 5 UNL H 1 302 803 UNL UNL . F 5 UNL H 1 303 804 UNL UNL . G 6 EDO H 1 304 52 EDO EDO . H 4 LDA H 1 305 2 LDA LDA . I 4 LDA H 1 306 3 LDA LDA . J 4 LDA H 1 307 6 LDA LDA . K 7 OLC L 1 301 301 OLC OLC . L 8 BCL L 1 302 301 BCL BCL . M 8 BCL L 1 303 302 BCL BCL . N 8 BCL L 1 304 304 BCL BCL . O 9 BPH L 1 305 402 BPH BPH . P 4 LDA L 1 306 708 LDA LDA . Q 5 UNL L 1 307 808 UNL UNL . R 5 UNL L 1 308 810 UNL UNL . S 10 HTO L 1 309 61 HTO HTO . T 10 HTO L 1 310 63 HTO HTO . U 4 LDA L 1 311 4 LDA LDA . V 11 CDL M 1 401 900 CDL CDL . W 8 BCL M 1 402 303 BCL BCL . X 9 BPH M 1 403 401 BPH BPH . Y 12 FE M 1 404 500 FE FE . Z 13 U10 M 1 405 501 U10 U10 . AA 14 SPN M 1 406 600 SPN SPN . BA 4 LDA M 1 407 701 LDA LDA . CA 4 LDA M 1 408 705 LDA LDA . DA 4 LDA M 1 409 709 LDA LDA . EA 4 LDA M 1 410 710 LDA LDA . FA 5 UNL M 1 411 809 UNL UNL . GA 6 EDO M 1 412 53 EDO EDO . HA 4 LDA M 1 413 1 LDA LDA . IA 4 LDA M 1 414 5 LDA LDA . JA 15 HOH H 1 401 32 HOH HOH . JA 15 HOH H 2 402 4 HOH HOH . JA 15 HOH H 3 403 21 HOH HOH . JA 15 HOH H 4 404 56 HOH HOH . JA 15 HOH H 5 405 18 HOH HOH . JA 15 HOH H 6 406 41 HOH HOH . JA 15 HOH H 7 407 24 HOH HOH . JA 15 HOH H 8 408 15 HOH HOH . JA 15 HOH H 9 409 22 HOH HOH . JA 15 HOH H 10 410 34 HOH HOH . JA 15 HOH H 11 411 62 HOH HOH . JA 15 HOH H 12 412 53 HOH HOH . JA 15 HOH H 13 413 6 HOH HOH . JA 15 HOH H 14 414 12 HOH HOH . JA 15 HOH H 15 415 1 HOH HOH . JA 15 HOH H 16 416 9 HOH HOH . JA 15 HOH H 17 417 59 HOH HOH . JA 15 HOH H 18 418 8 HOH HOH . JA 15 HOH H 19 419 50 HOH HOH . JA 15 HOH H 20 420 61 HOH HOH . JA 15 HOH H 21 421 11 HOH HOH . JA 15 HOH H 22 422 49 HOH HOH . JA 15 HOH H 23 423 38 HOH HOH . JA 15 HOH H 24 424 51 HOH HOH . JA 15 HOH H 25 425 29 HOH HOH . JA 15 HOH H 26 426 46 HOH HOH . JA 15 HOH H 27 427 48 HOH HOH . JA 15 HOH H 28 428 52 HOH HOH . KA 15 HOH L 1 401 16 HOH HOH . KA 15 HOH L 2 402 27 HOH HOH . KA 15 HOH L 3 403 58 HOH HOH . KA 15 HOH L 4 404 35 HOH HOH . KA 15 HOH L 5 405 31 HOH HOH . KA 15 HOH L 6 406 17 HOH HOH . KA 15 HOH L 7 407 5 HOH HOH . KA 15 HOH L 8 408 3 HOH HOH . KA 15 HOH L 9 409 44 HOH HOH . KA 15 HOH L 10 410 36 HOH HOH . KA 15 HOH L 11 411 23 HOH HOH . KA 15 HOH L 12 412 57 HOH HOH . LA 15 HOH M 1 501 30 HOH HOH . LA 15 HOH M 2 502 42 HOH HOH . LA 15 HOH M 3 503 28 HOH HOH . LA 15 HOH M 4 504 33 HOH HOH . LA 15 HOH M 5 505 47 HOH HOH . LA 15 HOH M 6 506 7 HOH HOH . LA 15 HOH M 7 507 54 HOH HOH . LA 15 HOH M 8 508 13 HOH HOH . LA 15 HOH M 9 509 26 HOH HOH . LA 15 HOH M 10 510 40 HOH HOH . LA 15 HOH M 11 511 10 HOH HOH . LA 15 HOH M 12 512 20 HOH HOH . LA 15 HOH M 13 513 19 HOH HOH . LA 15 HOH M 14 514 45 HOH HOH . LA 15 HOH M 15 515 37 HOH HOH . LA 15 HOH M 16 516 55 HOH HOH . LA 15 HOH M 17 517 14 HOH HOH . LA 15 HOH M 18 518 2 HOH HOH . LA 15 HOH M 19 519 43 HOH HOH . LA 15 HOH M 20 520 25 HOH HOH . LA 15 HOH M 21 521 39 HOH HOH . LA 15 HOH M 22 522 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 6 17.992 -0.216 -52.701 1 32.14 ? C1 EDO 304 H 1 HETATM 2 O O1 EDO . . . G 6 17.832 -0.397 -54.109 1 38.31 ? O1 EDO 304 H 1 HETATM 3 C C2 EDO . . . G 6 17.372 -1.409 -51.986 1 34.16 ? C2 EDO 304 H 1 HETATM 4 O O2 EDO . . . G 6 15.945 -1.349 -52.09 1 23.48 ? O2 EDO 304 H 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 339 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #