data_8C87
#
_model_server_result.job_id            mRnCbZPXQSas9YTTOY0TEw 
_model_server_result.datetime_utc      '2024-10-19 03:56:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8c87 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"U","auth_seq_id":311}' 
#
_entry.id    8C87 
#
_exptl.entry_id    8C87 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              229.402 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'LAURYL DIMETHYLAMINE-N-OXIDE' 
_entity.pdbx_number_of_molecules    12 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8C87 
_cell.length_a            99.725 
_cell.length_b            99.725 
_cell.length_c            239.107 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8C87 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    'P 4n 2n' 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 P N N 
? 4 U N N 
? 4 BA N N 
? 4 CA N N 
? 4 DA N N 
? 4 EA N N 
? 4 HA N N 
? 4 IA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B NE2 HIS 190 L HIS 190 1_555 Y FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? 
metalc ? metalc2 B NE2 HIS 230 L HIS 230 1_555 Y FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc3 C NE2 HIS 219 M HIS 219 1_555 Y FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
metalc ? metalc4 C OE2 GLU 234 M GLU 234 1_555 Y FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
metalc ? metalc5 C NE2 HIS 266 M HIS 266 1_555 Y FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? 
#
_chem_comp.formula           'C14 H31 N O' 
_chem_comp.formula_weight    229.402 
_chem_comp.id                LDA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'LAURYL DIMETHYLAMINE-N-OXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 O1 LDA sing 756 n n 
N1 CM1 LDA sing 757 n n 
N1 CM2 LDA sing 758 n n 
N1 C1 LDA sing 759 n n 
CM1 HM11 LDA sing 760 n n 
CM1 HM12 LDA sing 761 n n 
CM1 HM13 LDA sing 762 n n 
CM2 HM21 LDA sing 763 n n 
CM2 HM22 LDA sing 764 n n 
CM2 HM23 LDA sing 765 n n 
C1 C2 LDA sing 766 n n 
C1 H11 LDA sing 767 n n 
C1 H12 LDA sing 768 n n 
C2 C3 LDA sing 769 n n 
C2 H21 LDA sing 770 n n 
C2 H22 LDA sing 771 n n 
C3 C4 LDA sing 772 n n 
C3 H31 LDA sing 773 n n 
C3 H32 LDA sing 774 n n 
C4 C5 LDA sing 775 n n 
C4 H41 LDA sing 776 n n 
C4 H42 LDA sing 777 n n 
C5 C6 LDA sing 778 n n 
C5 H51 LDA sing 779 n n 
C5 H52 LDA sing 780 n n 
C6 C7 LDA sing 781 n n 
C6 H61 LDA sing 782 n n 
C6 H62 LDA sing 783 n n 
C7 C8 LDA sing 784 n n 
C7 H71 LDA sing 785 n n 
C7 H72 LDA sing 786 n n 
C8 C9 LDA sing 787 n n 
C8 H81 LDA sing 788 n n 
C8 H82 LDA sing 789 n n 
C9 C10 LDA sing 790 n n 
C9 H91 LDA sing 791 n n 
C9 H92 LDA sing 792 n n 
C10 C11 LDA sing 793 n n 
C10 H101 LDA sing 794 n n 
C10 H102 LDA sing 795 n n 
C11 C12 LDA sing 796 n n 
C11 H111 LDA sing 797 n n 
C11 H112 LDA sing 798 n n 
C12 H121 LDA sing 799 n n 
C12 H122 LDA sing 800 n n 
C12 H123 LDA sing 801 n n 
#
_atom_sites.entry_id                     8C87 
_atom_sites.fract_transf_matrix[1][1]    0.010028 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010028 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004182 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 LDA H 1 301 702 LDA LDA . 
E 5 UNL H 1 302 803 UNL UNL . 
F 5 UNL H 1 303 804 UNL UNL . 
G 6 EDO H 1 304 52 EDO EDO . 
H 4 LDA H 1 305 2 LDA LDA . 
I 4 LDA H 1 306 3 LDA LDA . 
J 4 LDA H 1 307 6 LDA LDA . 
K 7 OLC L 1 301 301 OLC OLC . 
L 8 BCL L 1 302 301 BCL BCL . 
M 8 BCL L 1 303 302 BCL BCL . 
N 8 BCL L 1 304 304 BCL BCL . 
O 9 BPH L 1 305 402 BPH BPH . 
P 4 LDA L 1 306 708 LDA LDA . 
Q 5 UNL L 1 307 808 UNL UNL . 
R 5 UNL L 1 308 810 UNL UNL . 
S 10 HTO L 1 309 61 HTO HTO . 
T 10 HTO L 1 310 63 HTO HTO . 
U 4 LDA L 1 311 4 LDA LDA . 
V 11 CDL M 1 401 900 CDL CDL . 
W 8 BCL M 1 402 303 BCL BCL . 
X 9 BPH M 1 403 401 BPH BPH . 
Y 12 FE M 1 404 500 FE FE . 
Z 13 U10 M 1 405 501 U10 U10 . 
AA 14 SPN M 1 406 600 SPN SPN . 
BA 4 LDA M 1 407 701 LDA LDA . 
CA 4 LDA M 1 408 705 LDA LDA . 
DA 4 LDA M 1 409 709 LDA LDA . 
EA 4 LDA M 1 410 710 LDA LDA . 
FA 5 UNL M 1 411 809 UNL UNL . 
GA 6 EDO M 1 412 53 EDO EDO . 
HA 4 LDA M 1 413 1 LDA LDA . 
IA 4 LDA M 1 414 5 LDA LDA . 
JA 15 HOH H 1 401 32 HOH HOH . 
JA 15 HOH H 2 402 4 HOH HOH . 
JA 15 HOH H 3 403 21 HOH HOH . 
JA 15 HOH H 4 404 56 HOH HOH . 
JA 15 HOH H 5 405 18 HOH HOH . 
JA 15 HOH H 6 406 41 HOH HOH . 
JA 15 HOH H 7 407 24 HOH HOH . 
JA 15 HOH H 8 408 15 HOH HOH . 
JA 15 HOH H 9 409 22 HOH HOH . 
JA 15 HOH H 10 410 34 HOH HOH . 
JA 15 HOH H 11 411 62 HOH HOH . 
JA 15 HOH H 12 412 53 HOH HOH . 
JA 15 HOH H 13 413 6 HOH HOH . 
JA 15 HOH H 14 414 12 HOH HOH . 
JA 15 HOH H 15 415 1 HOH HOH . 
JA 15 HOH H 16 416 9 HOH HOH . 
JA 15 HOH H 17 417 59 HOH HOH . 
JA 15 HOH H 18 418 8 HOH HOH . 
JA 15 HOH H 19 419 50 HOH HOH . 
JA 15 HOH H 20 420 61 HOH HOH . 
JA 15 HOH H 21 421 11 HOH HOH . 
JA 15 HOH H 22 422 49 HOH HOH . 
JA 15 HOH H 23 423 38 HOH HOH . 
JA 15 HOH H 24 424 51 HOH HOH . 
JA 15 HOH H 25 425 29 HOH HOH . 
JA 15 HOH H 26 426 46 HOH HOH . 
JA 15 HOH H 27 427 48 HOH HOH . 
JA 15 HOH H 28 428 52 HOH HOH . 
KA 15 HOH L 1 401 16 HOH HOH . 
KA 15 HOH L 2 402 27 HOH HOH . 
KA 15 HOH L 3 403 58 HOH HOH . 
KA 15 HOH L 4 404 35 HOH HOH . 
KA 15 HOH L 5 405 31 HOH HOH . 
KA 15 HOH L 6 406 17 HOH HOH . 
KA 15 HOH L 7 407 5 HOH HOH . 
KA 15 HOH L 8 408 3 HOH HOH . 
KA 15 HOH L 9 409 44 HOH HOH . 
KA 15 HOH L 10 410 36 HOH HOH . 
KA 15 HOH L 11 411 23 HOH HOH . 
KA 15 HOH L 12 412 57 HOH HOH . 
LA 15 HOH M 1 501 30 HOH HOH . 
LA 15 HOH M 2 502 42 HOH HOH . 
LA 15 HOH M 3 503 28 HOH HOH . 
LA 15 HOH M 4 504 33 HOH HOH . 
LA 15 HOH M 5 505 47 HOH HOH . 
LA 15 HOH M 6 506 7 HOH HOH . 
LA 15 HOH M 7 507 54 HOH HOH . 
LA 15 HOH M 8 508 13 HOH HOH . 
LA 15 HOH M 9 509 26 HOH HOH . 
LA 15 HOH M 10 510 40 HOH HOH . 
LA 15 HOH M 11 511 10 HOH HOH . 
LA 15 HOH M 12 512 20 HOH HOH . 
LA 15 HOH M 13 513 19 HOH HOH . 
LA 15 HOH M 14 514 45 HOH HOH . 
LA 15 HOH M 15 515 37 HOH HOH . 
LA 15 HOH M 16 516 55 HOH HOH . 
LA 15 HOH M 17 517 14 HOH HOH . 
LA 15 HOH M 18 518 2 HOH HOH . 
LA 15 HOH M 19 519 43 HOH HOH . 
LA 15 HOH M 20 520 25 HOH HOH . 
LA 15 HOH M 21 521 39 HOH HOH . 
LA 15 HOH M 22 522 60 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 LDA . . . U 4 40.863 -11.934 -13.784 1 57.16 ? N1 LDA 311 L 1 
HETATM 2 O O1 LDA . . . U 4 42.1 -11.787 -13.657 1 55.4 ? O1 LDA 311 L 1 
HETATM 3 C CM1 LDA . . . U 4 40.167 -11.058 -12.804 1 43.55 ? CM1 LDA 311 L 1 
HETATM 4 C CM2 LDA . . . U 4 40.449 -11.564 -15.153 1 66.51 ? CM2 LDA 311 L 1 
HETATM 5 C C1 LDA . . . U 4 40.544 -13.34 -13.566 1 41.06 ? C1 LDA 311 L 1 
HETATM 6 C C2 LDA . . . U 4 39.047 -13.587 -13.727 1 37.09 ? C2 LDA 311 L 1 
HETATM 7 C C3 LDA . . . U 4 38.81 -14.845 -14.563 1 36.87 ? C3 LDA 311 L 1 
HETATM 8 C C4 LDA . . . U 4 37.49 -14.769 -15.334 1 29.92 ? C4 LDA 311 L 1 
HETATM 9 C C5 LDA . . . U 4 36.702 -16.067 -15.16 1 21.56 ? C5 LDA 311 L 1 
HETATM 10 C C6 LDA . . . U 4 36.34 -16.672 -16.507 1 21.78 ? C6 LDA 311 L 1 
HETATM 11 C C7 LDA . . . U 4 34.841 -16.651 -16.757 1 33.99 ? C7 LDA 311 L 1 
HETATM 12 C C8 LDA . . . U 4 34.49 -16.166 -18.162 1 20.83 ? C8 LDA 311 L 1 
HETATM 13 C C9 LDA . . . U 4 34.134 -17.361 -19.028 1 22.06 ? C9 LDA 311 L 1 
HETATM 14 C C10 LDA . . . U 4 33.26 -17.039 -20.231 1 11.5 ? C10 LDA 311 L 1 
HETATM 15 C C11 LDA . . . U 4 34.041 -16.209 -21.241 1 21.11 ? C11 LDA 311 L 1 
HETATM 16 C C12 LDA . . . U 4 35.439 -16.789 -21.428 1 20.17 ? C12 LDA 311 L 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           16 
#