data_8C87 # _model_server_result.job_id USOKsAPjiChuC1Vj9tvg5A _model_server_result.datetime_utc '2024-10-19 03:59:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c87 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AA","auth_seq_id":406}' # _entry.id 8C87 # _exptl.entry_id 8C87 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 594.993 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description SPEROIDENONE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8C87 _cell.length_a 99.725 _cell.length_b 99.725 _cell.length_c 239.107 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C87 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall 'P 4n 2n' _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 14 _struct_asym.id AA _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B NE2 HIS 190 L HIS 190 1_555 Y FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.284 ? metalc ? metalc2 B NE2 HIS 230 L HIS 230 1_555 Y FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc3 C NE2 HIS 219 M HIS 219 1_555 Y FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? metalc ? metalc4 C OE2 GLU 234 M GLU 234 1_555 Y FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? metalc ? metalc5 C NE2 HIS 266 M HIS 266 1_555 Y FE FE . M FE 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? # _chem_comp.formula 'C41 H70 O2' _chem_comp.formula_weight 594.993 _chem_comp.id SPN _chem_comp.mon_nstd_flag . _chem_comp.name SPEROIDENONE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CMA O1 SPN sing 983 n n CMA HMA1 SPN sing 984 n n CMA HMA2 SPN sing 985 n n CMA HMA3 SPN sing 986 n n O1 C1 SPN sing 987 n n CM1 C1 SPN sing 988 n n CM1 HM11 SPN sing 989 n n CM1 HM12 SPN sing 990 n n CM1 HM13 SPN sing 991 n n CM2 C1 SPN sing 992 n n CM2 HM21 SPN sing 993 n n CM2 HM22 SPN sing 994 n n CM2 HM23 SPN sing 995 n n C1 C2 SPN sing 996 n n C2 O2 SPN doub 997 n n C2 C3 SPN sing 998 n n C3 C4 SPN sing 999 n n C3 H31 SPN sing 1000 n n C3 H32 SPN sing 1001 n n C4 C5 SPN doub 1002 e n C4 H4 SPN sing 1003 n n C5 CM3 SPN sing 1004 n n C5 C6 SPN sing 1005 n n CM3 HM31 SPN sing 1006 n n CM3 HM32 SPN sing 1007 n n CM3 HM33 SPN sing 1008 n n C6 C7 SPN sing 1009 n n C6 H61 SPN sing 1010 n n C6 H62 SPN sing 1011 n n C7 C8 SPN sing 1012 n n C7 H71 SPN sing 1013 n n C7 H72 SPN sing 1014 n n C8 C9 SPN doub 1015 e n C8 H8 SPN sing 1016 n n C9 CM4 SPN sing 1017 n n C9 C10 SPN sing 1018 n n CM4 HM41 SPN sing 1019 n n CM4 HM42 SPN sing 1020 n n CM4 HM43 SPN sing 1021 n n C10 C11 SPN sing 1022 n n C10 H101 SPN sing 1023 n n C10 H102 SPN sing 1024 n n C11 C12 SPN sing 1025 n n C11 H111 SPN sing 1026 n n C11 H112 SPN sing 1027 n n C12 C13 SPN doub 1028 e n C12 H12 SPN sing 1029 n n C13 CM5 SPN sing 1030 n n C13 C14 SPN sing 1031 n n CM5 HM51 SPN sing 1032 n n CM5 HM52 SPN sing 1033 n n CM5 HM53 SPN sing 1034 n n C14 C15 SPN sing 1035 n n C14 H141 SPN sing 1036 n n C14 H142 SPN sing 1037 n n C15 C16 SPN sing 1038 n n C15 H151 SPN sing 1039 n n C15 H152 SPN sing 1040 n n C16 C17 SPN sing 1041 n n C16 H161 SPN sing 1042 n n C16 H162 SPN sing 1043 n n C17 C18 SPN sing 1044 n n C17 H171 SPN sing 1045 n n C17 H172 SPN sing 1046 n n C18 CM6 SPN sing 1047 n n C18 C19 SPN doub 1048 e n CM6 HM61 SPN sing 1049 n n CM6 HM62 SPN sing 1050 n n CM6 HM63 SPN sing 1051 n n C19 C20 SPN sing 1052 n n C19 H19 SPN sing 1053 n n C20 C21 SPN sing 1054 n n C20 H201 SPN sing 1055 n n C20 H202 SPN sing 1056 n n C21 C22 SPN sing 1057 n n C21 H211 SPN sing 1058 n n C21 H212 SPN sing 1059 n n C22 CM7 SPN sing 1060 n n C22 C23 SPN sing 1061 n n C22 H22 SPN sing 1062 n n CM7 HM71 SPN sing 1063 n n CM7 HM72 SPN sing 1064 n n CM7 HM73 SPN sing 1065 n n C23 C24 SPN sing 1066 n n C23 H231 SPN sing 1067 n n C23 H232 SPN sing 1068 n n C24 C25 SPN sing 1069 n n C24 H241 SPN sing 1070 n n C24 H242 SPN sing 1071 n n C25 C26 SPN doub 1072 e n C25 H25 SPN sing 1073 n n C26 CM8 SPN sing 1074 n n C26 C27 SPN sing 1075 n n CM8 HM81 SPN sing 1076 n n CM8 HM82 SPN sing 1077 n n CM8 HM83 SPN sing 1078 n n C27 C28 SPN sing 1079 n n C27 H271 SPN sing 1080 n n C27 H272 SPN sing 1081 n n C28 C29 SPN sing 1082 n n C28 H281 SPN sing 1083 n n C28 H282 SPN sing 1084 n n C29 C30 SPN doub 1085 n n C29 H29 SPN sing 1086 n n C30 CM9 SPN sing 1087 n n C30 CMB SPN sing 1088 n n CM9 HM91 SPN sing 1089 n n CM9 HM92 SPN sing 1090 n n CM9 HM93 SPN sing 1091 n n CMB HMB1 SPN sing 1092 n n CMB HMB2 SPN sing 1093 n n CMB HMB3 SPN sing 1094 n n # _atom_sites.entry_id 8C87 _atom_sites.fract_transf_matrix[1][1] 0.010028 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010028 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004182 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 LDA H 1 301 702 LDA LDA . E 5 UNL H 1 302 803 UNL UNL . F 5 UNL H 1 303 804 UNL UNL . G 6 EDO H 1 304 52 EDO EDO . H 4 LDA H 1 305 2 LDA LDA . I 4 LDA H 1 306 3 LDA LDA . J 4 LDA H 1 307 6 LDA LDA . K 7 OLC L 1 301 301 OLC OLC . L 8 BCL L 1 302 301 BCL BCL . M 8 BCL L 1 303 302 BCL BCL . N 8 BCL L 1 304 304 BCL BCL . O 9 BPH L 1 305 402 BPH BPH . P 4 LDA L 1 306 708 LDA LDA . Q 5 UNL L 1 307 808 UNL UNL . R 5 UNL L 1 308 810 UNL UNL . S 10 HTO L 1 309 61 HTO HTO . T 10 HTO L 1 310 63 HTO HTO . U 4 LDA L 1 311 4 LDA LDA . V 11 CDL M 1 401 900 CDL CDL . W 8 BCL M 1 402 303 BCL BCL . X 9 BPH M 1 403 401 BPH BPH . Y 12 FE M 1 404 500 FE FE . Z 13 U10 M 1 405 501 U10 U10 . AA 14 SPN M 1 406 600 SPN SPN . BA 4 LDA M 1 407 701 LDA LDA . CA 4 LDA M 1 408 705 LDA LDA . DA 4 LDA M 1 409 709 LDA LDA . EA 4 LDA M 1 410 710 LDA LDA . FA 5 UNL M 1 411 809 UNL UNL . GA 6 EDO M 1 412 53 EDO EDO . HA 4 LDA M 1 413 1 LDA LDA . IA 4 LDA M 1 414 5 LDA LDA . JA 15 HOH H 1 401 32 HOH HOH . JA 15 HOH H 2 402 4 HOH HOH . JA 15 HOH H 3 403 21 HOH HOH . JA 15 HOH H 4 404 56 HOH HOH . JA 15 HOH H 5 405 18 HOH HOH . JA 15 HOH H 6 406 41 HOH HOH . JA 15 HOH H 7 407 24 HOH HOH . JA 15 HOH H 8 408 15 HOH HOH . JA 15 HOH H 9 409 22 HOH HOH . JA 15 HOH H 10 410 34 HOH HOH . JA 15 HOH H 11 411 62 HOH HOH . JA 15 HOH H 12 412 53 HOH HOH . JA 15 HOH H 13 413 6 HOH HOH . JA 15 HOH H 14 414 12 HOH HOH . JA 15 HOH H 15 415 1 HOH HOH . JA 15 HOH H 16 416 9 HOH HOH . JA 15 HOH H 17 417 59 HOH HOH . JA 15 HOH H 18 418 8 HOH HOH . JA 15 HOH H 19 419 50 HOH HOH . JA 15 HOH H 20 420 61 HOH HOH . JA 15 HOH H 21 421 11 HOH HOH . JA 15 HOH H 22 422 49 HOH HOH . JA 15 HOH H 23 423 38 HOH HOH . JA 15 HOH H 24 424 51 HOH HOH . JA 15 HOH H 25 425 29 HOH HOH . JA 15 HOH H 26 426 46 HOH HOH . JA 15 HOH H 27 427 48 HOH HOH . JA 15 HOH H 28 428 52 HOH HOH . KA 15 HOH L 1 401 16 HOH HOH . KA 15 HOH L 2 402 27 HOH HOH . KA 15 HOH L 3 403 58 HOH HOH . KA 15 HOH L 4 404 35 HOH HOH . KA 15 HOH L 5 405 31 HOH HOH . KA 15 HOH L 6 406 17 HOH HOH . KA 15 HOH L 7 407 5 HOH HOH . KA 15 HOH L 8 408 3 HOH HOH . KA 15 HOH L 9 409 44 HOH HOH . KA 15 HOH L 10 410 36 HOH HOH . KA 15 HOH L 11 411 23 HOH HOH . KA 15 HOH L 12 412 57 HOH HOH . LA 15 HOH M 1 501 30 HOH HOH . LA 15 HOH M 2 502 42 HOH HOH . LA 15 HOH M 3 503 28 HOH HOH . LA 15 HOH M 4 504 33 HOH HOH . LA 15 HOH M 5 505 47 HOH HOH . LA 15 HOH M 6 506 7 HOH HOH . LA 15 HOH M 7 507 54 HOH HOH . LA 15 HOH M 8 508 13 HOH HOH . LA 15 HOH M 9 509 26 HOH HOH . LA 15 HOH M 10 510 40 HOH HOH . LA 15 HOH M 11 511 10 HOH HOH . LA 15 HOH M 12 512 20 HOH HOH . LA 15 HOH M 13 513 19 HOH HOH . LA 15 HOH M 14 514 45 HOH HOH . LA 15 HOH M 15 515 37 HOH HOH . LA 15 HOH M 16 516 55 HOH HOH . LA 15 HOH M 17 517 14 HOH HOH . LA 15 HOH M 18 518 2 HOH HOH . LA 15 HOH M 19 519 43 HOH HOH . LA 15 HOH M 20 520 25 HOH HOH . LA 15 HOH M 21 521 39 HOH HOH . LA 15 HOH M 22 522 60 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CMA SPN . . . AA 14 -16.383 -13.309 -22.015 1 24.15 ? CMA SPN 406 M 1 HETATM 2 O O1 SPN . . . AA 14 -16.693 -14.059 -20.862 1 39.12 ? O1 SPN 406 M 1 HETATM 3 C CM1 SPN . . . AA 14 -18.287 -15.564 -19.811 1 48.9 ? CM1 SPN 406 M 1 HETATM 4 C CM2 SPN . . . AA 14 -18.221 -15.371 -22.299 1 41.51 ? CM2 SPN 406 M 1 HETATM 5 C C1 SPN . . . AA 14 -17.384 -15.287 -21.012 1 50.23 ? C1 SPN 406 M 1 HETATM 6 C C2 SPN . . . AA 14 -16.291 -16.368 -21.121 1 50.13 ? C2 SPN 406 M 1 HETATM 7 O O2 SPN . . . AA 14 -16.476 -17.335 -21.823 1 43.65 ? O2 SPN 406 M 1 HETATM 8 C C3 SPN . . . AA 14 -15.001 -16.181 -20.33 1 46.36 ? C3 SPN 406 M 1 HETATM 9 C C4 SPN . . . AA 14 -14.3 -17.441 -19.89 1 32.14 ? C4 SPN 406 M 1 HETATM 10 C C5 SPN . . . AA 14 -13.176 -17.522 -19.155 1 36.66 ? C5 SPN 406 M 1 HETATM 11 C CM3 SPN . . . AA 14 -12.446 -16.316 -18.635 1 39.52 ? CM3 SPN 406 M 1 HETATM 12 C C6 SPN . . . AA 14 -12.569 -18.863 -18.772 1 25.9 ? C6 SPN 406 M 1 HETATM 13 C C7 SPN . . . AA 14 -11.04 -18.97 -18.914 1 21.38 ? C7 SPN 406 M 1 HETATM 14 C C8 SPN . . . AA 14 -10.45 -20.188 -18.248 1 31.25 ? C8 SPN 406 M 1 HETATM 15 C C9 SPN . . . AA 14 -9.374 -20.256 -17.438 1 22.7 ? C9 SPN 406 M 1 HETATM 16 C CM4 SPN . . . AA 14 -8.563 -19.06 -17.038 1 25.61 ? CM4 SPN 406 M 1 HETATM 17 C C10 SPN . . . AA 14 -8.909 -21.555 -16.831 1 19.69 ? C10 SPN 406 M 1 HETATM 18 C C11 SPN . . . AA 14 -7.602 -22.136 -17.406 1 18.05 ? C11 SPN 406 M 1 HETATM 19 C C12 SPN . . . AA 14 -7.592 -23.63 -17.312 1 18.46 ? C12 SPN 406 M 1 HETATM 20 C C13 SPN . . . AA 14 -6.5 -24.4 -17.292 1 27.66 ? C13 SPN 406 M 1 HETATM 21 C CM5 SPN . . . AA 14 -5.103 -23.854 -17.368 1 10.7 ? CM5 SPN 406 M 1 HETATM 22 C C14 SPN . . . AA 14 -6.596 -25.895 -17.171 1 9.37 ? C14 SPN 406 M 1 HETATM 23 C C15 SPN . . . AA 14 -5.353 -26.462 -16.498 1 16.65 ? C15 SPN 406 M 1 HETATM 24 C C16 SPN . . . AA 14 -5.35 -27.986 -16.375 1 15.94 ? C16 SPN 406 M 1 HETATM 25 C C17 SPN . . . AA 14 -6.762 -28.581 -16.356 1 12.19 ? C17 SPN 406 M 1 HETATM 26 C C18 SPN . . . AA 14 -6.814 -30.078 -16.399 1 11.15 ? C18 SPN 406 M 1 HETATM 27 C CM6 SPN . . . AA 14 -5.549 -30.824 -16.138 1 8.61 ? CM6 SPN 406 M 1 HETATM 28 C C19 SPN . . . AA 14 -7.945 -30.705 -16.663 1 19.58 ? C19 SPN 406 M 1 HETATM 29 C C20 SPN . . . AA 14 -8.071 -32.189 -16.725 1 29.91 ? C20 SPN 406 M 1 HETATM 30 C C21 SPN . . . AA 14 -9.435 -32.604 -17.265 1 32.02 ? C21 SPN 406 M 1 HETATM 31 C C22 SPN . . . AA 14 -9.794 -34.062 -16.972 1 21.88 ? C22 SPN 406 M 1 HETATM 32 C CM7 SPN . . . AA 14 -8.814 -35.076 -17.559 1 9.62 ? CM7 SPN 406 M 1 HETATM 33 C C23 SPN . . . AA 14 -11.225 -34.31 -17.421 1 9.68 ? C23 SPN 406 M 1 HETATM 34 C C24 SPN . . . AA 14 -11.794 -35.412 -16.524 1 24.12 ? C24 SPN 406 M 1 HETATM 35 C C25 SPN . . . AA 14 -13.277 -35.324 -16.309 1 21.22 ? C25 SPN 406 M 1 HETATM 36 C C26 SPN . . . AA 14 -13.964 -35.552 -15.182 1 26.39 ? C26 SPN 406 M 1 HETATM 37 C CM8 SPN . . . AA 14 -13.37 -35.936 -13.857 1 22.04 ? CM8 SPN 406 M 1 HETATM 38 C C27 SPN . . . AA 14 -15.46 -35.418 -15.16 1 33.42 ? C27 SPN 406 M 1 HETATM 39 C C28 SPN . . . AA 14 -16.124 -36.44 -14.237 1 20.08 ? C28 SPN 406 M 1 HETATM 40 C C29 SPN . . . AA 14 -17.472 -36.726 -14.784 1 35.22 ? C29 SPN 406 M 1 HETATM 41 C C30 SPN . . . AA 14 -17.843 -37.521 -15.795 1 50.68 ? C30 SPN 406 M 1 HETATM 42 C CM9 SPN . . . AA 14 -16.861 -38.334 -16.611 1 35.62 ? CM9 SPN 406 M 1 HETATM 43 C CMB SPN . . . AA 14 -19.284 -37.678 -16.2 1 46.94 ? CMB SPN 406 M 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 375 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #