data_8C88 # _model_server_result.job_id K28Wj1L8NIP0wo_cCo1fXw _model_server_result.datetime_utc '2024-11-24 07:50:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c88 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"AA","auth_seq_id":408}' # _entry.id 8C88 # _exptl.entry_id 8C88 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 229.402 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LAURYL DIMETHYLAMINE-N-OXIDE' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8C88 _cell.length_a 100.91 _cell.length_b 100.91 _cell.length_c 237.02 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C88 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall 'P 4n 2n' _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 AA N N ? 5 BA N N ? 5 CA N N ? 5 DA N N ? 5 HA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 214 L CYS 214 1_555 C SG CYS 19 M CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc1 B NE2 HIS 190 L HIS 190 1_555 X FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc2 B NE2 HIS 230 L HIS 230 1_555 X FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc3 C NE2 HIS 219 M HIS 219 1_555 X FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc4 C OE1 GLU 234 M GLU 234 1_555 X FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc5 C OE2 GLU 234 M GLU 234 1_555 X FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc6 C NE2 HIS 266 M HIS 266 1_555 X FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? # _chem_comp.formula 'C14 H31 N O' _chem_comp.formula_weight 229.402 _chem_comp.id LDA _chem_comp.mon_nstd_flag . _chem_comp.name 'LAURYL DIMETHYLAMINE-N-OXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 O1 LDA sing 490 n n N1 CM1 LDA sing 491 n n N1 CM2 LDA sing 492 n n N1 C1 LDA sing 493 n n CM1 HM11 LDA sing 494 n n CM1 HM12 LDA sing 495 n n CM1 HM13 LDA sing 496 n n CM2 HM21 LDA sing 497 n n CM2 HM22 LDA sing 498 n n CM2 HM23 LDA sing 499 n n C1 C2 LDA sing 500 n n C1 H11 LDA sing 501 n n C1 H12 LDA sing 502 n n C2 C3 LDA sing 503 n n C2 H21 LDA sing 504 n n C2 H22 LDA sing 505 n n C3 C4 LDA sing 506 n n C3 H31 LDA sing 507 n n C3 H32 LDA sing 508 n n C4 C5 LDA sing 509 n n C4 H41 LDA sing 510 n n C4 H42 LDA sing 511 n n C5 C6 LDA sing 512 n n C5 H51 LDA sing 513 n n C5 H52 LDA sing 514 n n C6 C7 LDA sing 515 n n C6 H61 LDA sing 516 n n C6 H62 LDA sing 517 n n C7 C8 LDA sing 518 n n C7 H71 LDA sing 519 n n C7 H72 LDA sing 520 n n C8 C9 LDA sing 521 n n C8 H81 LDA sing 522 n n C8 H82 LDA sing 523 n n C9 C10 LDA sing 524 n n C9 H91 LDA sing 525 n n C9 H92 LDA sing 526 n n C10 C11 LDA sing 527 n n C10 H101 LDA sing 528 n n C10 H102 LDA sing 529 n n C11 C12 LDA sing 530 n n C11 H111 LDA sing 531 n n C11 H112 LDA sing 532 n n C12 H121 LDA sing 533 n n C12 H122 LDA sing 534 n n C12 H123 LDA sing 535 n n # _atom_sites.entry_id 8C88 _atom_sites.fract_transf_matrix[1][1] 0.00991 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00991 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004219 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NKP H 1 301 301 NKP NKP . E 5 LDA H 1 302 702 LDA LDA . F 6 UNL H 1 303 802 UNL UNL . G 6 UNL H 1 304 803 UNL UNL . H 6 UNL H 1 305 804 UNL UNL . I 7 OLC L 1 501 501 OLC OLC . J 8 BCL L 1 502 302 BCL BCL . K 8 BCL L 1 503 304 BCL BCL . L 9 BPH L 1 504 402 BPH BPH . M 6 UNL L 1 505 805 UNL UNL . N 6 UNL L 1 506 807 UNL UNL . O 6 UNL L 1 507 808 UNL UNL . P 10 DIO L 1 508 40 DIO DIO . Q 11 EDO L 1 509 46 EDO EDO . R 11 EDO L 1 510 48 EDO EDO . S 11 EDO L 1 511 50 EDO EDO . T 4 NKP M 1 401 401 NKP NKP . U 8 BCL M 1 402 301 BCL BCL . V 8 BCL M 1 403 303 BCL BCL . W 9 BPH M 1 404 401 BPH BPH . X 12 FE M 1 405 500 FE FE . Y 13 U10 M 1 406 501 U10 U10 . Z 14 SPN M 1 407 600 SPN SPN . AA 5 LDA M 1 408 701 LDA LDA . BA 5 LDA M 1 409 705 LDA LDA . CA 5 LDA M 1 410 709 LDA LDA . DA 5 LDA M 1 411 710 LDA LDA . EA 6 UNL M 1 412 810 UNL UNL . FA 15 PO4 M 1 413 2 PO4 PO4 . GA 15 PO4 M 1 414 3 PO4 PO4 . HA 5 LDA M 1 415 1 LDA LDA . IA 16 HOH H 1 401 21 HOH HOH . IA 16 HOH H 2 402 18 HOH HOH . IA 16 HOH H 3 403 17 HOH HOH . JA 16 HOH L 1 601 9 HOH HOH . JA 16 HOH L 2 602 11 HOH HOH . JA 16 HOH L 3 603 10 HOH HOH . JA 16 HOH L 4 604 4 HOH HOH . JA 16 HOH L 5 605 14 HOH HOH . JA 16 HOH L 6 606 25 HOH HOH . JA 16 HOH L 7 607 5 HOH HOH . JA 16 HOH L 8 608 13 HOH HOH . KA 16 HOH M 1 501 12 HOH HOH . KA 16 HOH M 2 502 8 HOH HOH . KA 16 HOH M 3 503 2 HOH HOH . KA 16 HOH M 4 504 3 HOH HOH . KA 16 HOH M 5 505 6 HOH HOH . KA 16 HOH M 6 506 16 HOH HOH . KA 16 HOH M 7 507 1 HOH HOH . KA 16 HOH M 8 508 24 HOH HOH . KA 16 HOH M 9 509 15 HOH HOH . KA 16 HOH M 10 510 22 HOH HOH . KA 16 HOH M 11 511 7 HOH HOH . KA 16 HOH M 12 512 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 LDA . . . AA 5 17.62 -39.418 -15.375 1 85.35 ? N1 LDA 408 M 1 HETATM 2 O O1 LDA . . . AA 5 18.781 -39.601 -14.905 1 85.29 ? O1 LDA 408 M 1 HETATM 3 C CM1 LDA . . . AA 5 16.956 -40.718 -15.636 1 71.95 ? CM1 LDA 408 M 1 HETATM 4 C CM2 LDA . . . AA 5 16.862 -38.735 -14.303 1 73.67 ? CM2 LDA 408 M 1 HETATM 5 C C1 LDA . . . AA 5 17.61 -38.559 -16.589 1 78.46 ? C1 LDA 408 M 1 HETATM 6 C C2 LDA . . . AA 5 18.754 -38.9 -17.565 1 73 ? C2 LDA 408 M 1 HETATM 7 C C3 LDA . . . AA 5 18.747 -38.117 -18.892 1 69.97 ? C3 LDA 408 M 1 HETATM 8 C C4 LDA . . . AA 5 18.969 -39.082 -20.085 1 86.15 ? C4 LDA 408 M 1 HETATM 9 C C5 LDA . . . AA 5 18.952 -38.524 -21.526 1 74.43 ? C5 LDA 408 M 1 HETATM 10 C C6 LDA . . . AA 5 18.932 -39.599 -22.639 1 69.76 ? C6 LDA 408 M 1 HETATM 11 C C7 LDA . . . AA 5 18.322 -39.1 -23.969 1 73.95 ? C7 LDA 408 M 1 HETATM 12 C C8 LDA . . . AA 5 18.323 -40.103 -25.154 1 85.63 ? C8 LDA 408 M 1 HETATM 13 C C9 LDA . . . AA 5 17.964 -39.513 -26.551 1 68.14 ? C9 LDA 408 M 1 HETATM 14 C C10 LDA . . . AA 5 16.954 -40.359 -27.359 1 60.44 ? C10 LDA 408 M 1 HETATM 15 C C11 LDA . . . AA 5 16.099 -39.541 -28.351 1 62.52 ? C11 LDA 408 M 1 HETATM 16 C C12 LDA . . . AA 5 14.828 -40.236 -28.895 1 40.41 ? C12 LDA 408 M 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #