data_8C88 # _model_server_result.job_id ULfRBELSJEvMCsoCFfzKfg _model_server_result.datetime_utc '2024-11-13 06:57:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c88 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":501}' # _entry.id 8C88 # _exptl.entry_id 8C88 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 356.54 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8C88 _cell.length_a 100.91 _cell.length_b 100.91 _cell.length_c 237.02 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C88 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall 'P 4n 2n' _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 214 L CYS 214 1_555 C SG CYS 19 M CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc1 B NE2 HIS 190 L HIS 190 1_555 X FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? metalc ? metalc2 B NE2 HIS 230 L HIS 230 1_555 X FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc3 C NE2 HIS 219 M HIS 219 1_555 X FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc4 C OE1 GLU 234 M GLU 234 1_555 X FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc5 C OE2 GLU 234 M GLU 234 1_555 X FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc6 C NE2 HIS 266 M HIS 266 1_555 X FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? # _chem_comp.formula 'C21 H40 O4' _chem_comp.formula_weight 356.54 _chem_comp.id OLC _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 1-Oleoyl-R-glycerol # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 OLC sing 669 n n C10 C9 OLC doub 670 n n C10 C11 OLC sing 671 n n C9 C8 OLC sing 672 n n C17 C16 OLC sing 673 z n C11 C12 OLC sing 674 n n C8 C7 OLC sing 675 n n C24 C22 OLC sing 676 n n C24 O25 OLC sing 677 n n C16 C15 OLC sing 678 n n C12 C13 OLC sing 679 n n C7 C6 OLC sing 680 n n C15 C14 OLC sing 681 n n C13 C14 OLC sing 682 n n C6 C5 OLC sing 683 n n C5 C4 OLC sing 684 n n C4 C3 OLC sing 685 n n C3 C2 OLC sing 686 n n C2 C1 OLC sing 687 n n C21 C22 OLC sing 688 n n C21 O20 OLC sing 689 n n C1 O19 OLC doub 690 n n C1 O20 OLC sing 691 n n C22 O23 OLC sing 692 n n C18 H18 OLC sing 693 n n C18 H18A OLC sing 694 n n C18 H18B OLC sing 695 n n C10 H10 OLC sing 696 n n C9 H9 OLC sing 697 n n C17 H17 OLC sing 698 n n C17 H17A OLC sing 699 n n C11 H11 OLC sing 700 n n C11 H11A OLC sing 701 n n C8 H8 OLC sing 702 n n C8 H8A OLC sing 703 n n C24 H24 OLC sing 704 n n C24 H24A OLC sing 705 n n C16 H16 OLC sing 706 n n C16 H16A OLC sing 707 n n C12 H12 OLC sing 708 n n C12 H12A OLC sing 709 n n C7 H7 OLC sing 710 n n C7 H7A OLC sing 711 n n C15 H15 OLC sing 712 n n C15 H15A OLC sing 713 n n C13 H13 OLC sing 714 n n C13 H13A OLC sing 715 n n C6 H6 OLC sing 716 n n C6 H6A OLC sing 717 n n C14 H14 OLC sing 718 n n C14 H14A OLC sing 719 n n C5 H5 OLC sing 720 n n C5 H5A OLC sing 721 n n C4 H4 OLC sing 722 n n C4 H4A OLC sing 723 n n C3 H3 OLC sing 724 n n C3 H3A OLC sing 725 n n C2 H2 OLC sing 726 n n C2 H2A OLC sing 727 n n C21 H21 OLC sing 728 n n C21 H21A OLC sing 729 n n C22 H22 OLC sing 730 n n O25 HO25 OLC sing 731 n n O23 HO23 OLC sing 732 n n # _atom_sites.entry_id 8C88 _atom_sites.fract_transf_matrix[1][1] 0.00991 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00991 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004219 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NKP H 1 301 301 NKP NKP . E 5 LDA H 1 302 702 LDA LDA . F 6 UNL H 1 303 802 UNL UNL . G 6 UNL H 1 304 803 UNL UNL . H 6 UNL H 1 305 804 UNL UNL . I 7 OLC L 1 501 501 OLC OLC . J 8 BCL L 1 502 302 BCL BCL . K 8 BCL L 1 503 304 BCL BCL . L 9 BPH L 1 504 402 BPH BPH . M 6 UNL L 1 505 805 UNL UNL . N 6 UNL L 1 506 807 UNL UNL . O 6 UNL L 1 507 808 UNL UNL . P 10 DIO L 1 508 40 DIO DIO . Q 11 EDO L 1 509 46 EDO EDO . R 11 EDO L 1 510 48 EDO EDO . S 11 EDO L 1 511 50 EDO EDO . T 4 NKP M 1 401 401 NKP NKP . U 8 BCL M 1 402 301 BCL BCL . V 8 BCL M 1 403 303 BCL BCL . W 9 BPH M 1 404 401 BPH BPH . X 12 FE M 1 405 500 FE FE . Y 13 U10 M 1 406 501 U10 U10 . Z 14 SPN M 1 407 600 SPN SPN . AA 5 LDA M 1 408 701 LDA LDA . BA 5 LDA M 1 409 705 LDA LDA . CA 5 LDA M 1 410 709 LDA LDA . DA 5 LDA M 1 411 710 LDA LDA . EA 6 UNL M 1 412 810 UNL UNL . FA 15 PO4 M 1 413 2 PO4 PO4 . GA 15 PO4 M 1 414 3 PO4 PO4 . HA 5 LDA M 1 415 1 LDA LDA . IA 16 HOH H 1 401 21 HOH HOH . IA 16 HOH H 2 402 18 HOH HOH . IA 16 HOH H 3 403 17 HOH HOH . JA 16 HOH L 1 601 9 HOH HOH . JA 16 HOH L 2 602 11 HOH HOH . JA 16 HOH L 3 603 10 HOH HOH . JA 16 HOH L 4 604 4 HOH HOH . JA 16 HOH L 5 605 14 HOH HOH . JA 16 HOH L 6 606 25 HOH HOH . JA 16 HOH L 7 607 5 HOH HOH . JA 16 HOH L 8 608 13 HOH HOH . KA 16 HOH M 1 501 12 HOH HOH . KA 16 HOH M 2 502 8 HOH HOH . KA 16 HOH M 3 503 2 HOH HOH . KA 16 HOH M 4 504 3 HOH HOH . KA 16 HOH M 5 505 6 HOH HOH . KA 16 HOH M 6 506 16 HOH HOH . KA 16 HOH M 7 507 1 HOH HOH . KA 16 HOH M 8 508 24 HOH HOH . KA 16 HOH M 9 509 15 HOH HOH . KA 16 HOH M 10 510 22 HOH HOH . KA 16 HOH M 11 511 7 HOH HOH . KA 16 HOH M 12 512 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C18 OLC . . . I 7 -12.387 -21.058 -41.679 1 78.65 ? C18 OLC 501 L 1 HETATM 2 C C10 OLC . . . I 7 -4.504 -22.614 -36.279 1 84.41 ? C10 OLC 501 L 1 HETATM 3 C C9 OLC . . . I 7 -3.316 -23.216 -36.449 1 87.87 ? C9 OLC 501 L 1 HETATM 4 C C17 OLC . . . I 7 -11.358 -21.747 -40.792 1 82.47 ? C17 OLC 501 L 1 HETATM 5 C C11 OLC . . . I 7 -4.925 -21.373 -37.047 1 83.54 ? C11 OLC 501 L 1 HETATM 6 C C8 OLC . . . I 7 -2.28 -22.697 -37.424 1 87.46 ? C8 OLC 501 L 1 HETATM 7 C C24 OLC . . . I 7 1.644 -28.773 -43.834 1 79.62 ? C24 OLC 501 L 1 HETATM 8 C C16 OLC . . . I 7 -10.662 -20.805 -39.791 1 86.83 ? C16 OLC 501 L 1 HETATM 9 C C12 OLC . . . I 7 -6.453 -21.358 -37.206 1 91.46 ? C12 OLC 501 L 1 HETATM 10 C C7 OLC . . . I 7 -0.849 -23.133 -37.103 1 86.12 ? C7 OLC 501 L 1 HETATM 11 C C15 OLC . . . I 7 -9.206 -21.206 -39.484 1 85.47 ? C15 OLC 501 L 1 HETATM 12 C C13 OLC . . . I 7 -6.957 -20.495 -38.384 1 94.17 ? C13 OLC 501 L 1 HETATM 13 C C6 OLC . . . I 7 -0.511 -24.569 -37.539 1 89.36 ? C6 OLC 501 L 1 HETATM 14 C C14 OLC . . . I 7 -8.492 -20.314 -38.456 1 88.86 ? C14 OLC 501 L 1 HETATM 15 C C5 OLC . . . I 7 0.832 -25.011 -36.929 1 79.59 ? C5 OLC 501 L 1 HETATM 16 C C4 OLC . . . I 7 0.919 -26.506 -36.617 1 71.24 ? C4 OLC 501 L 1 HETATM 17 C C3 OLC . . . I 7 1.074 -27.293 -37.919 1 78.48 ? C3 OLC 501 L 1 HETATM 18 C C2 OLC . . . I 7 2.083 -28.434 -37.796 1 68.01 ? C2 OLC 501 L 1 HETATM 19 C C21 OLC . . . I 7 2.793 -28.826 -41.618 1 69.54 ? C21 OLC 501 L 1 HETATM 20 C C1 OLC . . . I 7 2.292 -29.072 -39.159 1 77.63 ? C1 OLC 501 L 1 HETATM 21 C C22 OLC . . . I 7 1.828 -28.056 -42.501 1 72.44 ? C22 OLC 501 L 1 HETATM 22 O O19 OLC . . . I 7 2.225 -30.288 -39.317 1 86.22 ? O19 OLC 501 L 1 HETATM 23 O O25 OLC . . . I 7 2.927 -28.939 -44.465 1 79.8 ? O25 OLC 501 L 1 HETATM 24 O O23 OLC . . . I 7 0.58 -27.97 -41.794 1 81.12 ? O23 OLC 501 L 1 HETATM 25 O O20 OLC . . . I 7 2.585 -28.248 -40.33 1 87.92 ? O20 OLC 501 L 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #