data_8C88
#
_model_server_result.job_id            DWfwuq-ILDUoXl3LviM11A 
_model_server_result.datetime_utc      '2024-11-13 06:56:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8c88 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":508}' 
#
_entry.id    8C88 
#
_exptl.entry_id    8C88 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              88.105 
_entity.id                          10 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '1,4-DIETHYLENE DIOXIDE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8C88 
_cell.length_a            100.91 
_cell.length_b            100.91 
_cell.length_c            237.02 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8C88 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    'P 4n 2n' 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      10 
_struct_asym.id                             P 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 214 L CYS 214 1_555 C SG CYS 19 M CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc1 B NE2 HIS 190 L HIS 190 1_555 X FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.308 ? 
metalc ? metalc2 B NE2 HIS 230 L HIS 230 1_555 X FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
metalc ? metalc3 C NE2 HIS 219 M HIS 219 1_555 X FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc4 C OE1 GLU 234 M GLU 234 1_555 X FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? 
metalc ? metalc5 C OE2 GLU 234 M GLU 234 1_555 X FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? 
metalc ? metalc6 C NE2 HIS 266 M HIS 266 1_555 X FE FE . M FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
#
_chem_comp.formula           'C4 H8 O2' 
_chem_comp.formula_weight    88.105 
_chem_comp.id                DIO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '1,4-DIETHYLENE DIOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C1' DIO sing 377 n n 
C1 O1 DIO sing 378 n n 
C1 H11 DIO sing 379 n n 
C1 H12 DIO sing 380 n n 
C2 C2' DIO sing 381 n n 
C2 O1 DIO sing 382 n n 
C2 H21 DIO sing 383 n n 
C2 H22 DIO sing 384 n n 
C1' O1' DIO sing 385 n n 
C1' "H1'1" DIO sing 386 n n 
C1' "H1'2" DIO sing 387 n n 
C2' O1' DIO sing 388 n n 
C2' "H2'1" DIO sing 389 n n 
C2' "H2'2" DIO sing 390 n n 
#
_atom_sites.entry_id                     8C88 
_atom_sites.fract_transf_matrix[1][1]    0.00991 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00991 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004219 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 NKP H 1 301 301 NKP NKP . 
E 5 LDA H 1 302 702 LDA LDA . 
F 6 UNL H 1 303 802 UNL UNL . 
G 6 UNL H 1 304 803 UNL UNL . 
H 6 UNL H 1 305 804 UNL UNL . 
I 7 OLC L 1 501 501 OLC OLC . 
J 8 BCL L 1 502 302 BCL BCL . 
K 8 BCL L 1 503 304 BCL BCL . 
L 9 BPH L 1 504 402 BPH BPH . 
M 6 UNL L 1 505 805 UNL UNL . 
N 6 UNL L 1 506 807 UNL UNL . 
O 6 UNL L 1 507 808 UNL UNL . 
P 10 DIO L 1 508 40 DIO DIO . 
Q 11 EDO L 1 509 46 EDO EDO . 
R 11 EDO L 1 510 48 EDO EDO . 
S 11 EDO L 1 511 50 EDO EDO . 
T 4 NKP M 1 401 401 NKP NKP . 
U 8 BCL M 1 402 301 BCL BCL . 
V 8 BCL M 1 403 303 BCL BCL . 
W 9 BPH M 1 404 401 BPH BPH . 
X 12 FE M 1 405 500 FE FE . 
Y 13 U10 M 1 406 501 U10 U10 . 
Z 14 SPN M 1 407 600 SPN SPN . 
AA 5 LDA M 1 408 701 LDA LDA . 
BA 5 LDA M 1 409 705 LDA LDA . 
CA 5 LDA M 1 410 709 LDA LDA . 
DA 5 LDA M 1 411 710 LDA LDA . 
EA 6 UNL M 1 412 810 UNL UNL . 
FA 15 PO4 M 1 413 2 PO4 PO4 . 
GA 15 PO4 M 1 414 3 PO4 PO4 . 
HA 5 LDA M 1 415 1 LDA LDA . 
IA 16 HOH H 1 401 21 HOH HOH . 
IA 16 HOH H 2 402 18 HOH HOH . 
IA 16 HOH H 3 403 17 HOH HOH . 
JA 16 HOH L 1 601 9 HOH HOH . 
JA 16 HOH L 2 602 11 HOH HOH . 
JA 16 HOH L 3 603 10 HOH HOH . 
JA 16 HOH L 4 604 4 HOH HOH . 
JA 16 HOH L 5 605 14 HOH HOH . 
JA 16 HOH L 6 606 25 HOH HOH . 
JA 16 HOH L 7 607 5 HOH HOH . 
JA 16 HOH L 8 608 13 HOH HOH . 
KA 16 HOH M 1 501 12 HOH HOH . 
KA 16 HOH M 2 502 8 HOH HOH . 
KA 16 HOH M 3 503 2 HOH HOH . 
KA 16 HOH M 4 504 3 HOH HOH . 
KA 16 HOH M 5 505 6 HOH HOH . 
KA 16 HOH M 6 506 16 HOH HOH . 
KA 16 HOH M 7 507 1 HOH HOH . 
KA 16 HOH M 8 508 24 HOH HOH . 
KA 16 HOH M 9 509 15 HOH HOH . 
KA 16 HOH M 10 510 22 HOH HOH . 
KA 16 HOH M 11 511 7 HOH HOH . 
KA 16 HOH M 12 512 19 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 DIO . . . P 10 -3.755 -10.143 -14.93 1 99.68 ? C1 DIO 508 L 1 
HETATM 2 C C2 DIO . . . P 10 -5.412 -10.122 -16.642 1 94.43 ? C2 DIO 508 L 1 
HETATM 3 C C1' DIO . . . P 10 -2.927 -9.207 -15.734 1 102.45 ? C1' DIO 508 L 1 
HETATM 4 C C2' DIO . . . P 10 -4.546 -9.208 -17.428 1 99.96 ? C2' DIO 508 L 1 
HETATM 5 O O1 DIO . . . P 10 -5.175 -9.981 -15.222 1 99.44 ? O1 DIO 508 L 1 
HETATM 6 O O1' DIO . . . P 10 -3.162 -9.407 -17.126 1 110 ? O1' DIO 508 L 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           207 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           6 
#