data_8C8Q # _model_server_result.job_id dhMCMJOMRz9k3lC8hJQW0w _model_server_result.datetime_utc '2024-11-14 22:27:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c8q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":301}' # _entry.id 8C8Q # _exptl.entry_id 8C8Q _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 691.959 _entity.id 18 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8C8Q _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C8Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tridecameric _pdbx_struct_assembly.oligomeric_count 13 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 18 S N N ? 18 T N N ? 18 V N N ? 18 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 J SG CYS 33 J CYS 33 1_555 J SG CYS 65 J CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 J SG CYS 43 J CYS 43 1_555 J SG CYS 54 J CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A O ALA 48 A ALA 48 1_555 R CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? metalc ? metalc2 A O GLY 50 A GLY 50 1_555 R CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc3 A NE2 HIS 68 A HIS 68 1_555 N FE HEA . A HEA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc4 A ND1 HIS 247 A HIS 247 1_555 P CU CU . A CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc5 A NE2 HIS 296 A HIS 296 1_555 P CU CU . A CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc6 A NE2 HIS 297 A HIS 297 1_555 P CU CU . A CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc7 A OD2 ASP 376 A ASP 376 1_555 Q MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc8 A NE2 HIS 383 A HIS 383 1_555 O FE HEA . A HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc9 A NE2 HIS 385 A HIS 385 1_555 N FE HEA . A HEA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc10 A O PRO 448 A PRO 448 1_555 R CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc11 Q MG MG . A MG 604 1_555 B OE1 GLU 219 B GLU 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc12 B ND1 HIS 182 B HIS 182 1_555 U CU1 CUA . B CUA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc13 B ND1 HIS 225 B HIS 225 1_555 U CU2 CUA . B CUA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? metalc ? metalc14 D SG CYS 120 D CYS 120 1_555 X ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc15 D NE2 HIS 128 D HIS 128 1_555 X ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc16 D SG CYS 143 D CYS 143 1_555 X ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc17 D SG CYS 146 D CYS 146 1_555 X ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? # _chem_comp.formula 'C37 H74 N O8 P' _chem_comp.formula_weight 691.959 _chem_comp.id PEF _chem_comp.mon_nstd_flag . _chem_comp.name DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 3-[AMINOETHYLPHOSPHORYL]-[1,2-DI-PALMITOYL]-SN-GLYCEROL # _atom_sites.entry_id 8C8Q _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code N 14 HEA A 1 601 601 HEA HEA . O 14 HEA A 1 602 602 HEA HEA . P 15 CU A 1 603 603 CU CU . Q 16 MG A 1 604 604 MG MG . R 17 CA A 1 605 605 CA CA . S 18 PEF A 1 606 301 PEF PEF . T 18 PEF B 1 301 606 PEF PEF . U 19 CUA B 1 302 301 CUA CUA . V 18 PEF C 1 301 302 PEF PEF . W 18 PEF C 1 302 303 PEF PEF . X 20 ZN D 1 201 201 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 PEF . . . T 18 129.359 128.208 80.427 1 73.68 ? C2 PEF 301 B 1 HETATM 2 C C1 PEF . . . T 18 130.85 128.263 80.743 1 74.96 ? C1 PEF 301 B 1 HETATM 3 N N PEF . . . T 18 134.619 131.878 79.477 1 69.41 ? N PEF 301 B 1 HETATM 4 C C3 PEF . . . T 18 129.14 128.381 78.931 1 70.09 ? C3 PEF 301 B 1 HETATM 5 C C4 PEF . . . T 18 133.49 130.527 81.157 1 74.99 ? C4 PEF 301 B 1 HETATM 6 C C5 PEF . . . T 18 134.486 130.533 80.003 1 73.45 ? C5 PEF 301 B 1 HETATM 7 C C10 PEF . . . T 18 128.11 127.079 82.121 1 73.17 ? C10 PEF 301 B 1 HETATM 8 C C11 PEF . . . T 18 126.906 126.214 82.401 1 71.53 ? C11 PEF 301 B 1 HETATM 9 C C12 PEF . . . T 18 127.17 124.814 81.866 1 70.88 ? C12 PEF 301 B 1 HETATM 10 C C13 PEF . . . T 18 126.053 123.852 82.244 1 69.25 ? C13 PEF 301 B 1 HETATM 11 C C14 PEF . . . T 18 124.752 124.18 81.525 1 65.39 ? C14 PEF 301 B 1 HETATM 12 C C15 PEF . . . T 18 123.861 122.946 81.51 1 68.41 ? C15 PEF 301 B 1 HETATM 13 C C16 PEF . . . T 18 122.477 123.24 80.95 1 73.51 ? C16 PEF 301 B 1 HETATM 14 C C17 PEF . . . T 18 121.71 121.936 80.764 1 71.51 ? C17 PEF 301 B 1 HETATM 15 C C18 PEF . . . T 18 120.255 122.173 80.379 1 70.41 ? C18 PEF 301 B 1 HETATM 16 C C19 PEF . . . T 18 119.45 122.725 81.55 1 69.01 ? C19 PEF 301 B 1 HETATM 17 C C20 PEF . . . T 18 117.955 122.486 81.362 1 63.84 ? C20 PEF 301 B 1 HETATM 18 C C21 PEF . . . T 18 117.498 122.87 79.96 1 66.66 ? C21 PEF 301 B 1 HETATM 19 C C22 PEF . . . T 18 115.983 123.017 79.894 1 69.51 ? C22 PEF 301 B 1 HETATM 20 C C23 PEF . . . T 18 115.288 121.728 80.313 1 68.53 ? C23 PEF 301 B 1 HETATM 21 C C24 PEF . . . T 18 113.844 121.696 79.825 1 66.39 ? C24 PEF 301 B 1 HETATM 22 C C25 PEF . . . T 18 113.024 122.801 80.452 1 71.63 ? C25 PEF 301 B 1 HETATM 23 C C30 PEF . . . T 18 127.11 129.241 77.762 1 74.77 ? C30 PEF 301 B 1 HETATM 24 C C31 PEF . . . T 18 125.795 128.911 77.1 1 74.99 ? C31 PEF 301 B 1 HETATM 25 C C32 PEF . . . T 18 124.759 128.519 78.145 1 72.53 ? C32 PEF 301 B 1 HETATM 26 C C33 PEF . . . T 18 123.405 128.296 77.484 1 71.44 ? C33 PEF 301 B 1 HETATM 27 C C34 PEF . . . T 18 122.452 127.53 78.392 1 71.37 ? C34 PEF 301 B 1 HETATM 28 C C35 PEF . . . T 18 121.954 128.402 79.537 1 70.59 ? C35 PEF 301 B 1 HETATM 29 C C36 PEF . . . T 18 121.035 127.627 80.476 1 69.29 ? C36 PEF 301 B 1 HETATM 30 C C37 PEF . . . T 18 119.762 127.182 79.766 1 69.54 ? C37 PEF 301 B 1 HETATM 31 C C38 PEF . . . T 18 118.73 126.645 80.75 1 71.05 ? C38 PEF 301 B 1 HETATM 32 C C39 PEF . . . T 18 118.002 127.771 81.473 1 69.28 ? C39 PEF 301 B 1 HETATM 33 C C40 PEF . . . T 18 116.816 127.228 82.26 1 68.34 ? C40 PEF 301 B 1 HETATM 34 C C41 PEF . . . T 18 115.584 127.07 81.379 1 67.96 ? C41 PEF 301 B 1 HETATM 35 C C42 PEF . . . T 18 114.408 126.575 82.208 1 68.29 ? C42 PEF 301 B 1 HETATM 36 C C43 PEF . . . T 18 113.124 126.558 81.39 1 68.95 ? C43 PEF 301 B 1 HETATM 37 C C44 PEF . . . T 18 112.014 125.802 82.112 1 71.23 ? C44 PEF 301 B 1 HETATM 38 C C45 PEF . . . T 18 111.731 126.398 83.473 1 70.64 ? C45 PEF 301 B 1 HETATM 39 O O4 PEF . . . T 18 128.521 127.865 82.957 1 70.4 ? O4 PEF 301 B 1 HETATM 40 O O5 PEF . . . T 18 127.648 130.317 77.562 1 77.37 ? O5 PEF 301 B 1 HETATM 41 O O2 PEF . . . T 18 128.791 126.968 80.842 1 75.29 ? O2 PEF 301 B 1 HETATM 42 O O3 PEF . . . T 18 127.745 128.285 78.654 1 68.27 ? O3 PEF 301 B 1 HETATM 43 O O1P PEF . . . T 18 132.961 127.869 83.771 1 77.76 ? O1P PEF 301 B 1 HETATM 44 O O2P PEF . . . T 18 131.9 130.23 83.441 1 75.96 ? O2P PEF 301 B 1 HETATM 45 O O3P PEF . . . T 18 131.052 128.207 82.154 1 80.95 ? O3P PEF 301 B 1 HETATM 46 O O4P PEF . . . T 18 133.349 129.202 81.669 1 81.02 ? O4P PEF 301 B 1 HETATM 47 P P PEF . . . T 18 132.321 128.897 82.87 1 97.7 ? P PEF 301 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 56 _model_server_stats.query_time_ms 414 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 47 #