data_8C8Q # _model_server_result.job_id bLXdgMezLuVonB9RT4ZYkg _model_server_result.datetime_utc '2024-11-14 22:17:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c8q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":602}' # _entry.id 8C8Q # _exptl.entry_id 8C8Q _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 852.837 _entity.id 14 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HEME-A _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8C8Q _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C8Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tridecameric _pdbx_struct_assembly.oligomeric_count 13 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 14 N N N ? 14 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 J SG CYS 33 J CYS 33 1_555 J SG CYS 65 J CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf2 J SG CYS 43 J CYS 43 1_555 J SG CYS 54 J CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A O ALA 48 A ALA 48 1_555 R CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? metalc ? metalc2 A O GLY 50 A GLY 50 1_555 R CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc3 A NE2 HIS 68 A HIS 68 1_555 N FE HEA . A HEA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc4 A ND1 HIS 247 A HIS 247 1_555 P CU CU . A CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc5 A NE2 HIS 296 A HIS 296 1_555 P CU CU . A CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc6 A NE2 HIS 297 A HIS 297 1_555 P CU CU . A CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc7 A OD2 ASP 376 A ASP 376 1_555 Q MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? metalc ? metalc8 A NE2 HIS 383 A HIS 383 1_555 O FE HEA . A HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc9 A NE2 HIS 385 A HIS 385 1_555 N FE HEA . A HEA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? metalc ? metalc10 A O PRO 448 A PRO 448 1_555 R CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? metalc ? metalc11 Q MG MG . A MG 604 1_555 B OE1 GLU 219 B GLU 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc12 B ND1 HIS 182 B HIS 182 1_555 U CU1 CUA . B CUA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? metalc ? metalc13 B ND1 HIS 225 B HIS 225 1_555 U CU2 CUA . B CUA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? metalc ? metalc14 D SG CYS 120 D CYS 120 1_555 X ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc15 D NE2 HIS 128 D HIS 128 1_555 X ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc16 D SG CYS 143 D CYS 143 1_555 X ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc17 D SG CYS 146 D CYS 146 1_555 X ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? # _chem_comp.formula 'C49 H56 Fe N4 O6' _chem_comp.formula_weight 852.837 _chem_comp.id HEA _chem_comp.mon_nstd_flag . _chem_comp.name HEME-A _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8C8Q _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code N 14 HEA A 1 601 601 HEA HEA . O 14 HEA A 1 602 602 HEA HEA . P 15 CU A 1 603 603 CU CU . Q 16 MG A 1 604 604 MG MG . R 17 CA A 1 605 605 CA CA . S 18 PEF A 1 606 301 PEF PEF . T 18 PEF B 1 301 606 PEF PEF . U 19 CUA B 1 302 301 CUA CUA . V 18 PEF C 1 301 302 PEF PEF . W 18 PEF C 1 302 303 PEF PEF . X 20 ZN D 1 201 201 ZN ZN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEA . . . O 14 102.168 114.343 97.07 1 54.39 ? FE HEA 602 A 1 HETATM 2 C CHA HEA . . . O 14 98.956 113.159 97.825 1 31.39 ? CHA HEA 602 A 1 HETATM 3 C CHB HEA . . . O 14 100.971 117.392 95.824 1 40.13 ? CHB HEA 602 A 1 HETATM 4 C CHC HEA . . . O 14 105.424 115.413 96.338 1 31.91 ? CHC HEA 602 A 1 HETATM 5 C CHD HEA . . . O 14 103.48 111.385 98.4 1 40.9 ? CHD HEA 602 A 1 HETATM 6 N NA HEA . . . O 14 100.356 114.997 96.633 1 43.53 ? NA HEA 602 A 1 HETATM 7 C C1A HEA . . . O 14 99.129 114.508 97.291 1 37.01 ? C1A HEA 602 A 1 HETATM 8 C C2A HEA . . . O 14 98.012 115.488 97.281 1 38.19 ? C2A HEA 602 A 1 HETATM 9 C C3A HEA . . . O 14 98.614 116.701 96.702 1 38.3 ? C3A HEA 602 A 1 HETATM 10 C C4A HEA . . . O 14 100.038 116.415 96.396 1 42.3 ? C4A HEA 602 A 1 HETATM 11 C CMA HEA . . . O 14 97.893 117.978 96.5 1 40.52 ? CMA HEA 602 A 1 HETATM 12 O OMA HEA . . . O 14 98.471 118.925 96.002 1 47.46 ? OMA HEA 602 A 1 HETATM 13 C CAA HEA . . . O 14 96.601 115.305 97.776 1 38.79 ? CAA HEA 602 A 1 HETATM 14 C CBA HEA . . . O 14 95.63 115.277 96.608 1 38.78 ? CBA HEA 602 A 1 HETATM 15 C CGA HEA . . . O 14 94.29 114.808 97.11 1 46.54 ? CGA HEA 602 A 1 HETATM 16 O O1A HEA . . . O 14 93.28 115.481 96.821 1 49.86 ? O1A HEA 602 A 1 HETATM 17 O O2A HEA . . . O 14 94.244 113.764 97.792 1 47.57 ? O2A HEA 602 A 1 HETATM 18 N NB HEA . . . O 14 103.032 116.081 96.242 1 44.85 ? NB HEA 602 A 1 HETATM 19 C C1B HEA . . . O 14 102.425 117.204 95.805 1 40.28 ? C1B HEA 602 A 1 HETATM 20 C C2B HEA . . . O 14 103.311 118.271 95.286 1 32.68 ? C2B HEA 602 A 1 HETATM 21 C C3B HEA . . . O 14 104.643 117.678 95.424 1 40.35 ? C3B HEA 602 A 1 HETATM 22 C C4B HEA . . . O 14 104.338 116.349 96.019 1 36.65 ? C4B HEA 602 A 1 HETATM 23 C CMB HEA . . . O 14 102.931 119.62 94.739 1 31.9 ? CMB HEA 602 A 1 HETATM 24 N NC HEA . . . O 14 104.101 113.547 97.327 1 39.74 ? NC HEA 602 A 1 HETATM 25 C C1C HEA . . . O 14 105.292 114.092 96.974 1 37.19 ? C1C HEA 602 A 1 HETATM 26 C C2C HEA . . . O 14 106.509 113.29 97.284 1 41.88 ? C2C HEA 602 A 1 HETATM 27 C C3C HEA . . . O 14 105.905 112.097 97.89 1 36.29 ? C3C HEA 602 A 1 HETATM 28 C C4C HEA . . . O 14 104.447 112.36 97.871 1 39.29 ? C4C HEA 602 A 1 HETATM 29 C CMC HEA . . . O 14 107.951 113.634 97.01 1 44.82 ? CMC HEA 602 A 1 HETATM 30 C CAC HEA . . . O 14 106.55 110.869 98.436 1 39.84 ? CAC HEA 602 A 1 HETATM 31 C CBC HEA . . . O 14 107.854 110.667 98.441 1 47.06 ? CBC HEA 602 A 1 HETATM 32 N ND HEA . . . O 14 101.361 112.607 97.955 1 41.32 ? ND HEA 602 A 1 HETATM 33 C C1D HEA . . . O 14 102.019 111.53 98.433 1 42.49 ? C1D HEA 602 A 1 HETATM 34 C C2D HEA . . . O 14 101.178 110.456 99.018 1 38.66 ? C2D HEA 602 A 1 HETATM 35 C C3D HEA . . . O 14 99.822 110.985 98.859 1 36.64 ? C3D HEA 602 A 1 HETATM 36 C C4D HEA . . . O 14 100.071 112.283 98.184 1 33.97 ? C4D HEA 602 A 1 HETATM 37 C CMD HEA . . . O 14 101.608 109.145 99.617 1 39.07 ? CMD HEA 602 A 1 HETATM 38 C CAD HEA . . . O 14 98.51 110.339 99.236 1 42.62 ? CAD HEA 602 A 1 HETATM 39 C CBD HEA . . . O 14 98.238 110.399 100.73 1 47.07 ? CBD HEA 602 A 1 HETATM 40 C CGD HEA . . . O 14 96.891 109.764 100.981 1 49.66 ? CGD HEA 602 A 1 HETATM 41 O O1D HEA . . . O 14 96.656 108.645 100.48 1 41.66 ? O1D HEA 602 A 1 HETATM 42 O O2D HEA . . . O 14 96.06 110.381 101.677 1 55.43 ? O2D HEA 602 A 1 HETATM 43 C C11 HEA . . . O 14 105.95 118.279 95.068 1 48.73 ? C11 HEA 602 A 1 HETATM 44 O O11 HEA . . . O 14 106.884 117.998 96.115 1 46.68 ? O11 HEA 602 A 1 HETATM 45 C C12 HEA . . . O 14 106.475 117.736 93.741 1 49.52 ? C12 HEA 602 A 1 HETATM 46 C C13 HEA . . . O 14 107.76 118.453 93.336 1 41.9 ? C13 HEA 602 A 1 HETATM 47 C C14 HEA . . . O 14 108.201 118.041 91.945 1 41.76 ? C14 HEA 602 A 1 HETATM 48 C C15 HEA . . . O 14 108.054 118.832 90.868 1 37.99 ? C15 HEA 602 A 1 HETATM 49 C C16 HEA . . . O 14 108.522 118.358 89.513 1 36.69 ? C16 HEA 602 A 1 HETATM 50 C C17 HEA . . . O 14 109.998 118.678 89.328 1 36.86 ? C17 HEA 602 A 1 HETATM 51 C C18 HEA . . . O 14 110.174 120.156 89.061 1 39.27 ? C18 HEA 602 A 1 HETATM 52 C C19 HEA . . . O 14 110.431 120.656 87.84 1 39.84 ? C19 HEA 602 A 1 HETATM 53 C C20 HEA . . . O 14 110.598 122.149 87.681 1 44.58 ? C20 HEA 602 A 1 HETATM 54 C C21 HEA . . . O 14 109.492 122.742 86.815 1 46.55 ? C21 HEA 602 A 1 HETATM 55 C C22 HEA . . . O 14 108.164 122.669 87.537 1 47.67 ? C22 HEA 602 A 1 HETATM 56 C C23 HEA . . . O 14 107.243 123.645 87.463 1 50.82 ? C23 HEA 602 A 1 HETATM 57 C C24 HEA . . . O 14 107.474 124.892 86.663 1 52.07 ? C24 HEA 602 A 1 HETATM 58 C C25 HEA . . . O 14 105.952 123.487 88.209 1 45.33 ? C25 HEA 602 A 1 HETATM 59 C C26 HEA . . . O 14 107.432 120.19 90.98 1 42.32 ? C26 HEA 602 A 1 HETATM 60 C C27 HEA . . . O 14 110.564 119.772 86.636 1 44.75 ? C27 HEA 602 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 52 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 60 #