data_8C8Q
#
_model_server_result.job_id            '_aCyPX0TxOSjsBLtebU_3w' 
_model_server_result.datetime_utc      '2024-11-14 22:24:05' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8c8q 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":606}' 
#
_entry.id    8C8Q 
#
_exptl.entry_id    8C8Q 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              691.959 
_entity.id                          18 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8C8Q 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8C8Q 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tridecameric 
_pdbx_struct_assembly.oligomeric_count      13 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 18 S N N 
? 18 T N N 
? 18 V N N 
? 18 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 J SG CYS 33 J CYS 33 1_555 J SG CYS 65 J CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 J SG CYS 43 J CYS 43 1_555 J SG CYS 54 J CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
metalc ? metalc1 A O ALA 48 A ALA 48 1_555 R CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.898 ? 
metalc ? metalc2 A O GLY 50 A GLY 50 1_555 R CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? 
metalc ? metalc3 A NE2 HIS 68 A HIS 68 1_555 N FE HEA . A HEA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? 
metalc ? metalc4 A ND1 HIS 247 A HIS 247 1_555 P CU CU . A CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? 
metalc ? metalc5 A NE2 HIS 296 A HIS 296 1_555 P CU CU . A CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? 
metalc ? metalc6 A NE2 HIS 297 A HIS 297 1_555 P CU CU . A CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? 
metalc ? metalc7 A OD2 ASP 376 A ASP 376 1_555 Q MG MG . A MG 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.927 ? 
metalc ? metalc8 A NE2 HIS 383 A HIS 383 1_555 O FE HEA . A HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? 
metalc ? metalc9 A NE2 HIS 385 A HIS 385 1_555 N FE HEA . A HEA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? 
metalc ? metalc10 A O PRO 448 A PRO 448 1_555 R CA CA . A CA 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.778 ? 
metalc ? metalc11 Q MG MG . A MG 604 1_555 B OE1 GLU 219 B GLU 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
metalc ? metalc12 B ND1 HIS 182 B HIS 182 1_555 U CU1 CUA . B CUA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
metalc ? metalc13 B ND1 HIS 225 B HIS 225 1_555 U CU2 CUA . B CUA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? 
metalc ? metalc14 D SG CYS 120 D CYS 120 1_555 X ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? 
metalc ? metalc15 D NE2 HIS 128 D HIS 128 1_555 X ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? 
metalc ? metalc16 D SG CYS 143 D CYS 143 1_555 X ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
metalc ? metalc17 D SG CYS 146 D CYS 146 1_555 X ZN ZN . D ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? 
#
_chem_comp.formula           'C37 H74 N O8 P' 
_chem_comp.formula_weight    691.959 
_chem_comp.id                PEF 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     3-[AMINOETHYLPHOSPHORYL]-[1,2-DI-PALMITOYL]-SN-GLYCEROL 
#
_atom_sites.entry_id                     8C8Q 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
N 14 HEA A 1 601 601 HEA HEA . 
O 14 HEA A 1 602 602 HEA HEA . 
P 15 CU A 1 603 603 CU CU . 
Q 16 MG A 1 604 604 MG MG . 
R 17 CA A 1 605 605 CA CA . 
S 18 PEF A 1 606 301 PEF PEF . 
T 18 PEF B 1 301 606 PEF PEF . 
U 19 CUA B 1 302 301 CUA CUA . 
V 18 PEF C 1 301 302 PEF PEF . 
W 18 PEF C 1 302 303 PEF PEF . 
X 20 ZN D 1 201 201 ZN ZN . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C2 PEF . . . S 18 121.664 107.365 127.289 1 52.74 ? C2 PEF 606 A 1 
HETATM 2 C C1 PEF . . . S 18 122.438 106.374 126.433 1 54.95 ? C1 PEF 606 A 1 
HETATM 3 N N PEF . . . S 18 128.7 106.134 128.095 1 52.38 ? N PEF 606 A 1 
HETATM 4 C C3 PEF . . . S 18 122.228 108.765 127.116 1 52.3 ? C3 PEF 606 A 1 
HETATM 5 C C4 PEF . . . S 18 127.423 105.748 126.071 1 54.89 ? C4 PEF 606 A 1 
HETATM 6 C C5 PEF . . . S 18 128.497 106.595 126.736 1 54.23 ? C5 PEF 606 A 1 
HETATM 7 C C10 PEF . . . S 18 119.493 106.417 127.615 1 61.15 ? C10 PEF 606 A 1 
HETATM 8 C C11 PEF . . . S 18 118.004 106.619 127.734 1 56.61 ? C11 PEF 606 A 1 
HETATM 9 C C12 PEF . . . S 18 117.378 105.462 128.498 1 55.75 ? C12 PEF 606 A 1 
HETATM 10 C C13 PEF . . . S 18 117.226 104.239 127.605 1 57.43 ? C13 PEF 606 A 1 
HETATM 11 C C14 PEF . . . S 18 115.769 103.805 127.532 1 63.92 ? C14 PEF 606 A 1 
HETATM 12 C C15 PEF . . . S 18 114.938 104.795 126.726 1 61 ? C15 PEF 606 A 1 
HETATM 13 C C16 PEF . . . S 18 113.506 104.302 126.561 1 53.25 ? C16 PEF 606 A 1 
HETATM 14 C C17 PEF . . . S 18 112.689 104.552 127.822 1 57.2 ? C17 PEF 606 A 1 
HETATM 15 C C18 PEF . . . S 18 111.373 103.789 127.788 1 57.55 ? C18 PEF 606 A 1 
HETATM 16 C C19 PEF . . . S 18 110.467 104.284 126.67 1 56.99 ? C19 PEF 606 A 1 
HETATM 17 C C20 PEF . . . S 18 109.126 103.567 126.728 1 60.05 ? C20 PEF 606 A 1 
HETATM 18 C C21 PEF . . . S 18 108.14 104.297 127.632 1 58.39 ? C21 PEF 606 A 1 
HETATM 19 C C22 PEF . . . S 18 107.473 105.457 126.903 1 63.23 ? C22 PEF 606 A 1 
HETATM 20 C C23 PEF . . . S 18 106.326 104.975 126.023 1 62.23 ? C23 PEF 606 A 1 
HETATM 21 C C24 PEF . . . S 18 105.764 106.117 125.185 1 61.48 ? C24 PEF 606 A 1 
HETATM 22 C C25 PEF . . . S 18 104.608 105.645 124.33 1 58.4 ? C25 PEF 606 A 1 
HETATM 23 C C30 PEF . . . S 18 121.232 110.991 126.571 1 64.63 ? C30 PEF 606 A 1 
HETATM 24 C C31 PEF . . . S 18 120.129 111.786 125.919 1 56.53 ? C31 PEF 606 A 1 
HETATM 25 C C32 PEF . . . S 18 118.784 111.285 126.428 1 54.88 ? C32 PEF 606 A 1 
HETATM 26 C C33 PEF . . . S 18 117.835 111.017 125.268 1 56.34 ? C33 PEF 606 A 1 
HETATM 27 C C34 PEF . . . S 18 116.422 110.719 125.754 1 57.8 ? C34 PEF 606 A 1 
HETATM 28 C C35 PEF . . . S 18 116.406 109.549 126.726 1 56.11 ? C35 PEF 606 A 1 
HETATM 29 C C36 PEF . . . S 18 115.107 108.753 126.646 1 56.03 ? C36 PEF 606 A 1 
HETATM 30 C C37 PEF . . . S 18 113.877 109.64 126.794 1 59.3 ? C37 PEF 606 A 1 
HETATM 31 C C38 PEF . . . S 18 112.608 108.799 126.892 1 62.85 ? C38 PEF 606 A 1 
HETATM 32 C C39 PEF . . . S 18 111.993 108.5 125.53 1 59.39 ? C39 PEF 606 A 1 
HETATM 33 C C40 PEF . . . S 18 111.393 109.754 124.906 1 56.44 ? C40 PEF 606 A 1 
HETATM 34 C C41 PEF . . . S 18 110.303 109.41 123.901 1 57.52 ? C41 PEF 606 A 1 
HETATM 35 C C42 PEF . . . S 18 108.952 109.299 124.596 1 58.32 ? C42 PEF 606 A 1 
HETATM 36 C C43 PEF . . . S 18 107.857 108.834 123.641 1 59.6 ? C43 PEF 606 A 1 
HETATM 37 C C44 PEF . . . S 18 107.675 109.793 122.469 1 58.32 ? C44 PEF 606 A 1 
HETATM 38 C C45 PEF . . . S 18 106.435 109.438 121.679 1 56.94 ? C45 PEF 606 A 1 
HETATM 39 O O4 PEF . . . S 18 120.034 105.447 128.116 1 57.79 ? O4 PEF 606 A 1 
HETATM 40 O O5 PEF . . . S 18 122.114 111.543 127.205 1 66.74 ? O5 PEF 606 A 1 
HETATM 41 O O2 PEF . . . S 18 120.297 107.387 126.893 1 63.16 ? O2 PEF 606 A 1 
HETATM 42 O O3 PEF . . . S 18 121.244 109.545 126.446 1 62.15 ? O3 PEF 606 A 1 
HETATM 43 O O1P PEF . . . S 18 124.646 103.913 126.86 1 61.16 ? O1P PEF 606 A 1 
HETATM 44 O O2P PEF . . . S 18 124.786 105.455 124.757 1 54.37 ? O2P PEF 606 A 1 
HETATM 45 O O3P PEF . . . S 18 123.775 106.293 126.909 1 60.39 ? O3P PEF 606 A 1 
HETATM 46 O O4P PEF . . . S 18 126.209 105.905 126.793 1 60.06 ? O4P PEF 606 A 1 
HETATM 47 P P PEF . . . S 18 124.833 105.279 126.251 1 70.23 ? P PEF 606 A 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           333 
_model_server_stats.encode_time_ms          16 
_model_server_stats.element_count           47 
#